Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8398081.1

Orthogroup ID

OG0000703

Physical Location & Seq

Genomic Coordinates Reverse (-)

545 .. 1258

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8398081.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

actgattgtggtaacaggaagcatggaaatagcaacaataaatccctcctctcgacatggagtgatgatgaacatcaggaggtcgaaaatgttgccttcgtgtcgtctctttcacttgaatctgaaagtgatgaagaattctcagatgatgagacaaatgttcgctgcaaacaactctataaagcgtcaaaagccacattaatcaaaaatgcaggtttggaagacgaaattgtgatactgaaggctaagaatgagaagttggaacttatatggagaacttctcaaaacacttgggaacaagaaaggaacaaactcatagaagagctgcagaactcacaaagtgacaaaagttcccagacctggaagatacaatgtgctgaactaaaaaacaaaatcaagattcttgaacttgaggtaaaaggacaacacgctctaaacttaaatctgctaactgaaaatgaatcattgcagaaagagctgaagtccactcaagagaagttgacaaagtttgagataagctctgcaacagcatctaggttgttcagctccggaaaagtccaccatgatacattcggagttggatattctggagaaaactccaaaggcactcactttgtgagagagtccaattcagaaggggagaatagtgatccaatcacccaagtcatcaaggacactatcacaagggttgacaagatgtcatcagacttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

26.84

Weight (kDa)

5.22

Isoelectric Point (pI)

30.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12811 FvH4_1g24841 FvH4_2g03460 FvH4_2g30311 FvH4_3g16731 FvH4_3g16931 FvH4_3g21841 FvH4_3g31692 FvH4_3g35772 FvH4_3g37482 FvH4_4g03991 FvH4_4g08241 FvH4_4g09290 FvH4_4g14651 FvH4_4g18201 FvH4_5g17842 FvH4_5g18993 FvH4_6g19711 FvH4_6g36421 FvH4_6g45941 FvH4_6g45942 FvH4_7g03942 FvH4_7g10731 FvH4_7g33141
prunus_persica	Prupe.1G185200_v2.0.a1
pyrus_communis	pycom01g05340 pycom05g05480 pycom14g05470
rosa_chinensis	RchiOBHm_Chr2g0143791 RchiOBHm_Chr2g0164531 RchiOBHm_Chr2g0174931 RchiOBHm_Chr3g0456701 RchiOBHm_Chr3g0462591 RchiOBHm_Chr3g0488601 RchiOBHm_Chr3g0489031 RchiOBHm_Chr4g0421211 RchiOBHm_Chr4g0421221 RchiOBHm_Chr6g0278461 RchiOBHm_Chr7g0183661 RchiOBHm_Chr7g0219131
rosa_multiflora	Rmu_co8327135.1_g000001 Rmu_co8385793.1_g000001 Rmu_co8398081.1_g000001 Rmu_sc0000721.1_g000029 Rmu_sc0000898.1_g000075 Rmu_sc0001156.1_g000001 Rmu_sc0003339.1_g000002 Rmu_sc0003505.1_g000007 Rmu_sc0003673.1_g000008 Rmu_sc0005071.1_g000010 Rmu_sc0005087.1_g000005 Rmu_sc0005350.1_g000007 Rmu_ssc0000118.1_g000016 Rmu_ssc0000162.1_g000012
rosa_roxburghii	Rroxscaffold_2G00123320 Rroxscaffold_3G00238750 Rroxscaffold_4G00300220 Rroxscaffold_5G00382590 Rroxscaffold_7G00206960
rosa_samantha	Rh1CG187800 Rh2BG032400 Rh4DG325100 Rh5CG260800 Rh6AG171500 Rh6AG472000
rosa_wichuraiana	Rw1G003490 Rw1G007660 Rw2G031060 Rw3G014070 Rw3G014230 Rw6G006100 Rw6G019680 Rw7G016530 Rw7G032660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	203
AccIII	TCCGGA	1 cut(s)	548
AclWI	GGATC	1 cut(s)	644
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	2 cut(s)	260, 500
AdeI	CACNNNGTG	2 cut(s)	341, 616
AfiI	CCNNNNNNNGG	1 cut(s)	360
AgsI	TTSAA	2 cut(s)	119, 407
AhdI	GACNNNNNGTC	1 cut(s)	697
AjnI	CCWGG	1 cut(s)	359
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AluBI	AGCT	4 cut(s)	325, 478, 519, 546
AluI	AGCT	4 cut(s)	325, 478, 519, 546
Alw26I	GTCTC	2 cut(s)	111, 146
AlwI	GGATC	1 cut(s)	644
Aor13HI	TCCGGA	1 cut(s)	548
ApeKI	GCWGC	2 cut(s)	165, 325
ApoI	RAATTY	1 cut(s)	137
AseI	ATTAAT	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	649
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	152, 312
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BciT130I	CCWGG	1 cut(s)	361
BcoDI	GTCTC	2 cut(s)	111, 146
BfaI	CTAG	1 cut(s)	534
BfmI	CTRYAG	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	203
BisI	GCNGC	2 cut(s)	166, 326
BlsI	GCNGC	2 cut(s)	167, 327
Bme1390I	CCNGG	1 cut(s)	361
BmeRI	GACNNNNNGTC	1 cut(s)	697
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	539
BpiI	GAAGAC	1 cut(s)	228
BplI	GAGNNNNNCTC	4 cut(s)	265, 297, 503, 535
BpmI	CTGGAG	1 cut(s)	609
BpuEI	CTTGAG	2 cut(s)	431, 474
BsaBI	GATNNNNATC	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	548
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse3DI	GCAATG	1 cut(s)	464
Bse8I	GATNNNNATC	1 cut(s)	72
BseAI	TCCGGA	1 cut(s)	548
BseBI	CCWGG	1 cut(s)	361
BseJI	GATNNNNATC	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseMI	GCAATG	1 cut(s)	464
BseMII	CTCAG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	152, 312
BsiSI	CCGG	1 cut(s)	549
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmAI	GTCTC	2 cut(s)	111, 146
BsmBI	CGTCTC	1 cut(s)	111
Bsp13I	TCCGGA	1 cut(s)	548
Bsp143I	GATC	1 cut(s)	649
BspCNI	CTCAG	1 cut(s)	155
BspEI	TCCGGA	1 cut(s)	548
BspMAI	CTGCAG	1 cut(s)	330
BspMI	ACCTGC	1 cut(s)	203
BspPI	GGATC	1 cut(s)	644
BspQI	GCTCTTC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	464
BssMI	GATC	1 cut(s)	649
Bst2UI	CCWGG	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	315
BstDEI	CTNAG	2 cut(s)	142, 246
BstKTI	GATC	1 cut(s)	652
BstMAI	GTCTC	2 cut(s)	111, 146
BstMBI	GATC	1 cut(s)	649
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 475
BstNI	CCWGG	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	359
BstSFI	CTRYAG	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	152, 312
BstV2I	GAAGAC	1 cut(s)	228
BveI	ACCTGC	1 cut(s)	203
CseI	GACGC	1 cut(s)	174
CviAII	CATG	3 cut(s)	23, 57, 563
CviJI	RGCY	6 cut(s)	194, 245, 325, 478, 519, 546
CviKI_1	RGCY	6 cut(s)	194, 245, 325, 478, 519, 546
DdeI	CTNAG	2 cut(s)	142, 246
DpnI	GATC	1 cut(s)	651
DpnII	GATC	1 cut(s)	649
DraIII	CACNNNGTG	2 cut(s)	341, 616
DriI	GACNNNNNGTC	1 cut(s)	697
Eam1104I	CTCTTC	1 cut(s)	315
Eam1105I	GACNNNNNGTC	1 cut(s)	697
EarI	CTCTTC	1 cut(s)	315
Eco57I	CTGAAG	2 cut(s)	260, 500
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	359
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	3 cut(s)	26, 60, 566
FaiI	YATR	7 cut(s)	24, 58, 180, 269, 271, 317, 564
FatI	CATG	3 cut(s)	22, 56, 562
Fnu4HI	GCNGC	2 cut(s)	166, 326
Fsp4HI	GCNGC	2 cut(s)	166, 326
FspBI	CTAG	1 cut(s)	534
GluI	GCNGC	2 cut(s)	166, 326
GsuI	CTGGAG	1 cut(s)	609
HapII	CCGG	1 cut(s)	549
HgaI	GACGC	1 cut(s)	174
Hin1II	CATG	3 cut(s)	26, 60, 566
HincII	GTYRAC	2 cut(s)	501, 691
HindII	GTYRAC	2 cut(s)	501, 691
HinfI	GANTC	4 cut(s)	119, 400, 461, 623
HpaII	CCGG	1 cut(s)	549
HphI	GGTGA	1 cut(s)	649
Hpy166II	GTNNAC	4 cut(s)	486, 501, 559, 691
Hpy188I	TCNGA	5 cut(s)	124, 145, 575, 634, 706
Hpy188III	TCNNGA	7 cut(s)	52, 77, 397, 404, 491, 549, 588
Hpy8I	GTNNAC	4 cut(s)	486, 501, 559, 691
HpyAV	CCTTC	3 cut(s)	106, 235, 629
HpyCH4V	TGCA	5 cut(s)	168, 212, 328, 469, 524
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 475
HpyF3I	CTNAG	2 cut(s)	142, 246
Hsp92II	CATG	3 cut(s)	26, 60, 566
Kpn2I	TCCGGA	1 cut(s)	548
Kzo9I	GATC	1 cut(s)	649
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	1 cut(s)	551
LpnPI	CCDG	7 cut(s)	62, 198, 346, 368, 373, 562, 573
Lsp1109I	GCAGC	2 cut(s)	152, 312
LweI	GCATC	1 cut(s)	539
MaeI	CTAG	1 cut(s)	534
MaeIII	GTNAC	2 cut(s)	11, 341
MalI	GATC	1 cut(s)	651
MboI	GATC	1 cut(s)	649
MboII	GAAGA	4 cut(s)	146, 233, 332, 376
MluCI	AATT	3 cut(s)	137, 228, 628
MlyI	GAGTC	1 cut(s)	632
MmeI	TCCRAC	2 cut(s)	240, 559
MnlI	CCTC	4 cut(s)	56, 59, 73, 406
MroI	TCCGGA	1 cut(s)	548
MseI	TTAA	2 cut(s)	200, 440
MspI	CCGG	1 cut(s)	549
MspR9I	CCNGG	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	361
MwoI	GCNNNNNNNGC	2 cut(s)	191, 475
NdeII	GATC	1 cut(s)	649
NlaIII	CATG	3 cut(s)	26, 60, 566
NmuCI	GTSAC	1 cut(s)	341
PciSI	GCTCTTC	1 cut(s)	315
PfeI	GAWTC	3 cut(s)	119, 400, 461
PkrI	GCNGC	2 cut(s)	167, 327
PleI	GAGTC	1 cut(s)	631
PpsI	GAGTC	1 cut(s)	631
PshBI	ATTAAT	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	359
PstI	CTGCAG	1 cut(s)	330
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	200, 440
SatI	GCNGC	2 cut(s)	166, 326
Sau3AI	GATC	1 cut(s)	649
SchI	GAGTC	1 cut(s)	632
ScrFI	CCNGG	1 cut(s)	361
SetI	ASST	9 cut(s)	84, 217, 327, 362, 417, 480, 521, 539, 548
SfaNI	GCATC	1 cut(s)	539
SfcI	CTRYAG	1 cut(s)	326
SmlI	CTYRAG	2 cut(s)	410, 489
SmoI	CTYRAG	2 cut(s)	410, 489
Sse9I	AATT	3 cut(s)	137, 228, 628
SspMI	CTAG	1 cut(s)	534
StyD4I	CCNGG	1 cut(s)	359
TaqI	TCGA	2 cut(s)	53, 84
TasI	AATT	3 cut(s)	137, 228, 628
TfiI	GAWTC	3 cut(s)	119, 400, 461
Tru1I	TTAA	2 cut(s)	200, 440
Tru9I	TTAA	2 cut(s)	200, 440
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	2 cut(s)	165, 325
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	3 cut(s)	84, 147, 474
VspI	ATTAAT	1 cut(s)	200
XapI	RAATTY	1 cut(s)	137
XspI	CTAG	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.