Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003505.1

Orthogroup ID

OG0000703

Physical Location & Seq

Genomic Coordinates Forward (+)

27487 .. 29929

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003505.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgctagaactagaagttaaaggacaacaagcattgaacttggaattgttggctaaatatgagtctttgcaagaggagttaaaattgactcaagaaagattcaccaagttcgatgtcagctctagttccatgtctaaattgctcggatcaggaaaagttcctcatgacacttgtggattaggatacaccagagagaattccaaaagtaccaagttcgtgagagcgttaagaccatctgtagaaaagaaagaagcctccattaatgatcatgtcacaattatgaagactcagaaggaaggtcaaccaacaccgaactatcaggtaaaacttgaccaagagtcccccactggtcaaaacagcgatagcggttcggcggcggtctggagatacctgcggggcagaacacttggctgtctgggcgcgatggcagtggtggggacgggccaggcttggctggcagcttatggtcttccttcagagaccgtacttcgccgtaaagctcgcctcccctttaacccgacccgactgcaatatcttgctattgggctcccgcaatgggctccaacttccggtgaacgatgtttctcccaaaaagaagaccggcgaaagaacgtgttcaagttcgagcatagatttgcagagatagccacaattatgtattgctcgatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

25.04

Weight (kDa)

9.43

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12811 FvH4_1g24841 FvH4_2g03460 FvH4_2g30311 FvH4_3g16731 FvH4_3g16931 FvH4_3g21841 FvH4_3g31692 FvH4_3g35772 FvH4_3g37482 FvH4_4g03991 FvH4_4g08241 FvH4_4g09290 FvH4_4g14651 FvH4_4g18201 FvH4_5g17842 FvH4_5g18993 FvH4_6g19711 FvH4_6g36421 FvH4_6g45941 FvH4_6g45942 FvH4_7g03942 FvH4_7g10731 FvH4_7g33141
prunus_persica	Prupe.1G185200_v2.0.a1
pyrus_communis	pycom01g05340 pycom05g05480 pycom14g05470
rosa_chinensis	RchiOBHm_Chr2g0143791 RchiOBHm_Chr2g0164531 RchiOBHm_Chr2g0174931 RchiOBHm_Chr3g0456701 RchiOBHm_Chr3g0462591 RchiOBHm_Chr3g0488601 RchiOBHm_Chr3g0489031 RchiOBHm_Chr4g0421211 RchiOBHm_Chr4g0421221 RchiOBHm_Chr6g0278461 RchiOBHm_Chr7g0183661 RchiOBHm_Chr7g0219131
rosa_multiflora	Rmu_co8327135.1_g000001 Rmu_co8385793.1_g000001 Rmu_co8398081.1_g000001 Rmu_sc0000721.1_g000029 Rmu_sc0000898.1_g000075 Rmu_sc0001156.1_g000001 Rmu_sc0003339.1_g000002 Rmu_sc0003505.1_g000007 Rmu_sc0003673.1_g000008 Rmu_sc0005071.1_g000010 Rmu_sc0005087.1_g000005 Rmu_sc0005350.1_g000007 Rmu_ssc0000118.1_g000016 Rmu_ssc0000162.1_g000012
rosa_roxburghii	Rroxscaffold_2G00123320 Rroxscaffold_3G00238750 Rroxscaffold_4G00300220 Rroxscaffold_5G00382590 Rroxscaffold_7G00206960
rosa_samantha	Rh1CG187800 Rh2BG032400 Rh4DG325100 Rh5CG260800 Rh6AG171500 Rh6AG472000
rosa_wichuraiana	Rw1G003490 Rw1G007660 Rw2G031060 Rw3G014070 Rw3G014230 Rw6G006100 Rw6G019680 Rw7G016530 Rw7G032660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	399
AccII	CGCG	1 cut(s)	422
AciI	CCGC	5 cut(s)	366, 374, 377, 394, 551
AclWI	GGATC	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	2 cut(s)	208, 486
AfiI	CCNNNNNNNGG	2 cut(s)	556, 569
AflIII	ACRYGT	1 cut(s)	612
AgsI	TTSAA	2 cut(s)	37, 619
AhdI	GACNNNNNGTC	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	3 cut(s)	120, 461, 500
AluI	AGCT	3 cut(s)	120, 461, 500
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	1 cut(s)	154
AoxI	GGCC	1 cut(s)	442
ApeKI	GCWGC	1 cut(s)	458
ApoI	RAATTY	1 cut(s)	196
AseI	ATTAAT	1 cut(s)	261
Asp700I	GAANNNNTTC	1 cut(s)	614
AspLEI	GCGC	1 cut(s)	422
AspS9I	GGNCC	1 cut(s)	442
AsuHPI	GGTGA	2 cut(s)	94, 584
BanII	GRGCYC	2 cut(s)	549, 562
BbsI	GAAGAC	3 cut(s)	290, 461, 603
BbvI	GCAGC	1 cut(s)	470
BccI	CCATC	2 cut(s)	241, 418
BceAI	ACGGC	1 cut(s)	477
BcgI	CGANNNNNNTGC	2 cut(s)	508, 542
BciT130I	CCWGG	1 cut(s)	446
BciVI	GTATCC	1 cut(s)	176
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	473
BfaI	CTAG	3 cut(s)	5, 11, 123
BfmI	CTRYAG	1 cut(s)	237
BfuAI	ACCTGC	1 cut(s)	399
BfuI	GTATCC	1 cut(s)	176
BisI	GCNGC	2 cut(s)	375, 459
BlsI	GCNGC	2 cut(s)	376, 460
Bme1390I	CCNGG	1 cut(s)	446
BmeRI	GACNNNNNGTC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	442
BmiI	GGNNCC	2 cut(s)	548, 561
BmrFI	CCNGG	1 cut(s)	446
BpiI	GAAGAC	3 cut(s)	290, 461, 603
BpmI	CTGGAG	1 cut(s)	403
BpuEI	CTTGAG	1 cut(s)	75
BsaI	GGTCTC	1 cut(s)	473
BsaWI	WCCGGW	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	2 cut(s)	556, 569
Bse118I	RCCGGY	1 cut(s)	600
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	560
BseBI	CCWGG	1 cut(s)	446
BseLI	CCNNNNNNNGG	2 cut(s)	556, 569
BseMI	GCAATG	1 cut(s)	560
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	470
Bsh1236I	CGCG	1 cut(s)	422
BshFI	GGCC	1 cut(s)	444
BsiSI	CCGG	2 cut(s)	570, 601
BslFI	GGGAC	2 cut(s)	325, 451
BslI	CCNNNNNNNGG	2 cut(s)	556, 569
BsmAI	GTCTC	1 cut(s)	473
BsmFI	GGGAC	2 cut(s)	325, 451
BsnI	GGCC	1 cut(s)	444
Bso31I	GGTCTC	1 cut(s)	473
Bsp1286I	GDGCHC	2 cut(s)	549, 562
Bsp143I	GATC	2 cut(s)	146, 265
BspACI	CCGC	5 cut(s)	366, 374, 377, 394, 551
BspANI	GGCC	1 cut(s)	444
BspCNI	CTCAG	1 cut(s)	301
BspFNI	CGCG	1 cut(s)	422
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	2 cut(s)	548, 561
BspMI	ACCTGC	1 cut(s)	399
BspPI	GGATC	1 cut(s)	154
BspTNI	GGTCTC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	560
BsrFI	RCCGGY	1 cut(s)	600
BsrI	ACTGG	1 cut(s)	352
BssAI	RCCGGY	1 cut(s)	600
BssMI	GATC	2 cut(s)	146, 265
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	1 cut(s)	484
BstC8I	GCNNGC	2 cut(s)	456, 502
BstDEI	CTNAG	1 cut(s)	288
BstFNI	CGCG	1 cut(s)	422
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	2 cut(s)	149, 268
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	2 cut(s)	146, 265
BstMWI	GCNNNNNNNGC	3 cut(s)	417, 455, 644
BstNI	CCWGG	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	444
BstSFI	CTRYAG	1 cut(s)	237
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	1 cut(s)	470
BstV2I	GAAGAC	3 cut(s)	290, 461, 603
BsuI	GTATCC	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	444
BtgZI	GCGATG	1 cut(s)	437
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	2 cut(s)	345, 435
BveI	ACCTGC	1 cut(s)	399
Cac8I	GCNNGC	2 cut(s)	456, 502
CciI	TCATGA	1 cut(s)	163
CfoI	GCGC	1 cut(s)	422
Cfr10I	RCCGGY	1 cut(s)	600
Cfr13I	GGNCC	1 cut(s)	442
Csp6I	GTAC	2 cut(s)	207, 485
CviAII	CATG	3 cut(s)	130, 164, 269
CviQI	GTAC	2 cut(s)	207, 485
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	2 cut(s)	148, 267
DpnII	GATC	2 cut(s)	146, 265
DriI	GACNNNNNGTC	1 cut(s)	337
Eam1105I	GACNNNNNGTC	1 cut(s)	337
Eco24I	GRGCYC	2 cut(s)	549, 562
Eco31I	GGTCTC	1 cut(s)	473
Eco57I	CTGAAG	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	444
EcoT38I	GRGCYC	2 cut(s)	549, 562
FaeI	CATG	3 cut(s)	133, 167, 272
FaiI	YATR	8 cut(s)	60, 131, 165, 270, 281, 465, 630, 656
FaqI	GGGAC	2 cut(s)	325, 451
FatI	CATG	3 cut(s)	129, 163, 268
FauI	CCCGC	2 cut(s)	387, 558
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	375, 459
FriOI	GRGCYC	2 cut(s)	549, 562
Fsp4HI	GCNGC	2 cut(s)	375, 459
FspBI	CTAG	3 cut(s)	5, 11, 123
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	2 cut(s)	375, 459
GsuI	CTGGAG	1 cut(s)	403
HaeIII	GGCC	1 cut(s)	444
HapII	CCGG	2 cut(s)	570, 601
HhaI	GCGC	1 cut(s)	422
Hin1II	CATG	3 cut(s)	133, 167, 272
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HincII	GTYRAC	1 cut(s)	302
HindII	GTYRAC	1 cut(s)	302
HinfI	GANTC	5 cut(s)	62, 88, 99, 286, 338
HpaII	CCGG	2 cut(s)	570, 601
HphI	GGTGA	2 cut(s)	94, 584
Hpy166II	GTNNAC	2 cut(s)	302, 575
Hpy188I	TCNGA	3 cut(s)	146, 291, 478
Hpy188III	TCNNGA	5 cut(s)	92, 150, 164, 217, 382
Hpy8I	GTNNAC	2 cut(s)	302, 575
HpyAV	CCTTC	3 cut(s)	286, 290, 483
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4IV	ACGT	1 cut(s)	612
HpyCH4V	TGCA	3 cut(s)	70, 529, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	417, 455, 644
HpyF3I	CTNAG	1 cut(s)	288
HpySE526I	ACGT	1 cut(s)	612
Hsp92II	CATG	3 cut(s)	133, 167, 272
HspAI	GCGC	1 cut(s)	420
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	146, 265
LmnI	GCTCC	2 cut(s)	552, 565
Lsp1109I	GCAGC	1 cut(s)	470
MaeI	CTAG	3 cut(s)	5, 11, 123
MaeII	ACGT	1 cut(s)	612
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	148, 267
MboI	GATC	2 cut(s)	146, 265
MboII	GAAGA	3 cut(s)	295, 461, 608
MhlI	GDGCHC	2 cut(s)	549, 562
MluCI	AATT	6 cut(s)	44, 83, 137, 196, 276, 651
MlyI	GAGTC	4 cut(s)	71, 82, 280, 347
MmeI	TCCRAC	1 cut(s)	587
MnlI	CCTC	4 cut(s)	67, 171, 265, 515
MroXI	GAANNNNTTC	1 cut(s)	614
MseI	TTAA	5 cut(s)	18, 80, 227, 261, 513
MslI	CAYNNNNRTG	2 cut(s)	278, 653
MspI	CCGG	2 cut(s)	570, 601
MspR9I	CCNGG	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	446
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	3 cut(s)	417, 455, 644
NdeII	GATC	2 cut(s)	146, 265
NlaIII	CATG	3 cut(s)	133, 167, 272
NlaIV	GGNNCC	2 cut(s)	548, 561
NmuCI	GTSAC	1 cut(s)	271
PagI	TCATGA	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	614
PfeI	GAWTC	1 cut(s)	99
PkrI	GCNGC	2 cut(s)	376, 460
PleI	GAGTC	4 cut(s)	70, 82, 280, 346
PpsI	GAGTC	4 cut(s)	70, 82, 280, 346
PshBI	ATTAAT	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	2 cut(s)	548, 561
PspPI	GGNCC	1 cut(s)	442
RsaI	GTAC	2 cut(s)	208, 486
RsaNI	GTAC	2 cut(s)	207, 485
RseI	CAYNNNNRTG	2 cut(s)	278, 653
SaqAI	TTAA	5 cut(s)	18, 80, 227, 261, 513
SatI	GCNGC	2 cut(s)	375, 459
Sau3AI	GATC	2 cut(s)	146, 265
Sau96I	GGNCC	1 cut(s)	442
SchI	GAGTC	4 cut(s)	71, 82, 280, 347
ScrFI	CCNGG	1 cut(s)	446
SduI	GDGCHC	2 cut(s)	549, 562
SetI	ASST	7 cut(s)	122, 301, 324, 393, 463, 502, 615
SfcI	CTRYAG	1 cut(s)	237
SmiMI	CAYNNNNRTG	2 cut(s)	278, 653
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	6 cut(s)	44, 83, 137, 196, 276, 651
SsiI	CCGC	5 cut(s)	366, 374, 377, 394, 551
SspMI	CTAG	3 cut(s)	5, 11, 123
StyD4I	CCNGG	1 cut(s)	444
TaaI	ACNGT	1 cut(s)	484
TaiI	ACGT	1 cut(s)	615
TaqI	TCGA	3 cut(s)	111, 624, 665
TasI	AATT	6 cut(s)	44, 83, 137, 196, 276, 651
TauI	GCSGC	1 cut(s)	377
TfiI	GAWTC	1 cut(s)	99
Tru1I	TTAA	5 cut(s)	18, 80, 227, 261, 513
Tru9I	TTAA	5 cut(s)	18, 80, 227, 261, 513
TscAI	CASTG	2 cut(s)	352, 435
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	296
TspRI	CASTG	2 cut(s)	352, 435
VspI	ATTAAT	1 cut(s)	261
XapI	RAATTY	1 cut(s)	196
XmnI	GAANNNNTTC	1 cut(s)	614
XspI	CTAG	3 cut(s)	5, 11, 123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.