Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000703

Physical Location & Seq

Genomic Coordinates Forward (+)

46865810 .. 46867083

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39088

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGATCTTGTTGGTCCGTCTCAAACTGAAAGCATGGGAAGTAAGAAATACTTACTGGTATTAGTTGATGATTTCTCTCGCTTCACTTGGGTTAATTTTTTAAGACATAAATATGATACATTTAGCAGTTTTAAGGGTTTGTGTAATAGAATTCTCACTGAGAAACAATCCTCAAATTTTTGCATTGTTAGACTTAGGACTGATCATGGAACTATGTTTAAAAATGCGTCTTTTGCAAATTATTGTGATGAACATGGTATTACACATGAATTTTCTGCTCCAATCACCCCACAACAAAATGATGTTGTGGAGAGAAAGAACAGGATTCTACTTGATATGGGGAGAGTATTGCTGCACTCTACTGGATTAACTCCAAACTTCTGGGCAGAAGCAATCAGCACAACGTGCTACACTACAAACCGGGTGTTTCTTAGACCTGGTACTGACAAAACTCATATGAATTGTGGAAAGGTAAGAAACCCACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

gag_pre-integrs

Protein Analysis

162

Amino Acids

18.63

Weight (kDa)

9.22

Isoelectric Point (pI)

22.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
rve	PF00665	11 - 97	2e-11	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12811 FvH4_1g24841 FvH4_2g03460 FvH4_2g30311 FvH4_3g16731 FvH4_3g16931 FvH4_3g21841 FvH4_3g31692 FvH4_3g35772 FvH4_3g37482 FvH4_4g03991 FvH4_4g08241 FvH4_4g09290 FvH4_4g14651 FvH4_4g18201 FvH4_5g17842 FvH4_5g18993 FvH4_6g19711 FvH4_6g36421 FvH4_6g45941 FvH4_6g45942 FvH4_7g03942 FvH4_7g10731 FvH4_7g33141
prunus_persica	Prupe.1G185200_v2.0.a1
pyrus_communis	pycom01g05340 pycom05g05480 pycom14g05470
rosa_chinensis	RchiOBHm_Chr2g0143791 RchiOBHm_Chr2g0164531 RchiOBHm_Chr2g0174931 RchiOBHm_Chr3g0456701 RchiOBHm_Chr3g0462591 RchiOBHm_Chr3g0488601 RchiOBHm_Chr3g0489031 RchiOBHm_Chr4g0421211 RchiOBHm_Chr4g0421221 RchiOBHm_Chr6g0278461 RchiOBHm_Chr7g0183661 RchiOBHm_Chr7g0219131
rosa_multiflora	Rmu_co8327135.1_g000001 Rmu_co8385793.1_g000001 Rmu_co8398081.1_g000001 Rmu_sc0000721.1_g000029 Rmu_sc0000898.1_g000075 Rmu_sc0001156.1_g000001 Rmu_sc0003339.1_g000002 Rmu_sc0003505.1_g000007 Rmu_sc0003673.1_g000008 Rmu_sc0005071.1_g000010 Rmu_sc0005087.1_g000005 Rmu_sc0005350.1_g000007 Rmu_ssc0000118.1_g000016 Rmu_ssc0000162.1_g000012
rosa_roxburghii	Rroxscaffold_2G00123320 Rroxscaffold_3G00238750 Rroxscaffold_4G00300220 Rroxscaffold_5G00382590 Rroxscaffold_7G00206960
rosa_samantha	Rh1CG187800 Rh2BG032400 Rh4DG325100 Rh5CG260800 Rh6AG171500 Rh6AG472000
rosa_wichuraiana	Rw1G003490 Rw1G007660 Rw2G031060 Rw3G014070 Rw3G014230 Rw6G006100 Rw6G019680 Rw7G016530 Rw7G032660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	3 cut(s)	150, 175, 269
AdeI	CACNNNGTG	1 cut(s)	405
AfaI	GTAC	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	436
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	352
ApoI	RAATTY	3 cut(s)	150, 175, 269
AspS9I	GGNCC	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	339
BciT130I	CCWGG	1 cut(s)	438
BclI	TGATCA	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	422
BcoDI	GTCTC	1 cut(s)	24
BisI	GCNGC	1 cut(s)	353
BlsI	GCNGC	1 cut(s)	354
Bme1390I	CCNGG	2 cut(s)	422, 438
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmrFI	CCNGG	2 cut(s)	422, 438
BpuMI	CCSGG	1 cut(s)	422
BsaJI	CCNNGG	1 cut(s)	482
Bse1I	ACTGG	2 cut(s)	60, 367
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	1 cut(s)	482
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	60, 367
BseXI	GCAGC	1 cut(s)	339
BsgI	GTGCAG	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	421
BsmAI	GTCTC	1 cut(s)	24
BsmBI	CGTCTC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	4, 202
BspCNI	CTCAG	1 cut(s)	151
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	60, 367
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	2 cut(s)	4, 202
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	1 cut(s)	486
BstAPI	GCANNNNNTGC	1 cut(s)	405
BstDEI	CTNAG	3 cut(s)	159, 194, 431
BstDSI	CCRYGG	1 cut(s)	482
BstKTI	GATC	2 cut(s)	7, 205
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	2 cut(s)	4, 202
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 405
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	2 cut(s)	420, 436
BstV1I	GCAGC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	4
BtgI	CCRYGG	1 cut(s)	482
BtsIMutI	CAGTG	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	14
CseI	GACGC	1 cut(s)	216
CsiI	ACCWGGT	1 cut(s)	436
Csp6I	GTAC	1 cut(s)	441
CviAII	CATG	4 cut(s)	34, 206, 254, 266
CviQI	GTAC	1 cut(s)	441
DdeI	CTNAG	3 cut(s)	159, 194, 431
DpnI	GATC	2 cut(s)	6, 204
DpnII	GATC	2 cut(s)	4, 202
DraI	TTTAAA	1 cut(s)	220
DraIII	CACNNNGTG	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	14
EcoRI	GAATTC	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	436
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	4 cut(s)	37, 209, 257, 269
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	4 cut(s)	33, 205, 253, 265
FauNDI	CATATG	1 cut(s)	456
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	353
Fsp4HI	GCNGC	1 cut(s)	353
GluI	GCNGC	1 cut(s)	353
HapII	CCGG	1 cut(s)	421
HgaI	GACGC	1 cut(s)	216
Hin1II	CATG	4 cut(s)	37, 209, 257, 269
HinfI	GANTC	1 cut(s)	325
HpaII	CCGG	1 cut(s)	421
HphI	GGTGA	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	486
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	3 cut(s)	183, 236, 355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 405
HpyF3I	CTNAG	3 cut(s)	159, 194, 431
HpySE526I	ACGT	1 cut(s)	404
Hsp92II	CATG	4 cut(s)	37, 209, 257, 269
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	4, 202
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	7 cut(s)	41, 307, 348, 367, 423, 434, 450
Lsp1109I	GCAGC	1 cut(s)	339
MabI	ACCWGGT	1 cut(s)	436
MaeII	ACGT	1 cut(s)	404
MalI	GATC	2 cut(s)	6, 204
MboI	GATC	2 cut(s)	4, 202
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	6 cut(s)	94, 150, 175, 238, 269, 460
MnlI	CCTC	1 cut(s)	181
MseI	TTAA	5 cut(s)	93, 101, 132, 219, 368
MslI	CAYNNNNRTG	1 cut(s)	111
MspI	CCGG	1 cut(s)	421
MspR9I	CCNGG	2 cut(s)	422, 438
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	2 cut(s)	233, 405
NciI	CCSGG	1 cut(s)	422
NdeI	CATATG	1 cut(s)	456
NdeII	GATC	2 cut(s)	4, 202
NlaIII	CATG	4 cut(s)	37, 209, 257, 269
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspPI	GGNCC	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	442
RsaNI	GTAC	1 cut(s)	441
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	5 cut(s)	93, 101, 132, 219, 368
SatI	GCNGC	1 cut(s)	353
Sau3AI	GATC	2 cut(s)	4, 202
Sau96I	GGNCC	1 cut(s)	14
ScrFI	CCNGG	2 cut(s)	422, 438
SetI	ASST	3 cut(s)	407, 439, 474
SexAI	ACCWGGT	1 cut(s)	436
SinI	GGWCC	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	6 cut(s)	94, 150, 175, 238, 269, 460
StyD4I	CCNGG	2 cut(s)	420, 436
TaaI	ACNGT	1 cut(s)	486
TaiI	ACGT	1 cut(s)	407
TasI	AATT	6 cut(s)	94, 150, 175, 238, 269, 460
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	5 cut(s)	93, 101, 132, 219, 368
Tru9I	TTAA	5 cut(s)	93, 101, 132, 219, 368
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	1 cut(s)	352
TspDTI	ATGAA	3 cut(s)	264, 282, 473
TspGWI	ACGGA	1 cut(s)	6
TspRI	CASTG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	3 cut(s)	150, 175, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.