transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 11 - 190 | 7.6e-22 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 582 - 652 | 1.2e-17 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 678 - 748 | 5.2e-16 | GAG-pre-integrase domain |
| rve | PF00665 | 763 - 866 | 2e-15 | Integrase core domain |
| SH3_retrovirus | PF25597 | 940 - 997 | 1.2e-12 | Retroviral polymerase SH3-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2919 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1398, 2882 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2149 |
| AccI | GTMKAC | 2 cut(s) | 1430, 2279 |
| AccIII | TCCGGA | 1 cut(s) | 683 |
| AclWI | GGATC | 5 cut(s) | 401, 1020, 1198, 1624, 2319 |
| AcuI | CTGAAG | 1 cut(s) | 2115 |
| AfaI | GTAC | 1 cut(s) | 2357 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 919, 1281, 2149, 2172, 2259 |
| AflIII | ACRYGT | 2 cut(s) | 1669, 1697 |
| AgeI | ACCGGT | 1 cut(s) | 2210 |
| AjnI | CCWGG | 1 cut(s) | 1888 |
| AleI | CACNNNNGTG | 3 cut(s) | 150, 1368, 2396 |
| Alw21I | GWGCWC | 3 cut(s) | 451, 987, 2991 |
| Alw26I | GTCTC | 2 cut(s) | 1443, 2971 |
| AlwI | GGATC | 5 cut(s) | 401, 1020, 1198, 1624, 2319 |
| Ama87I | CYCGRG | 1 cut(s) | 1528 |
| Aor13HI | TCCGGA | 1 cut(s) | 683 |
| AoxI | GGCC | 1 cut(s) | 1283 |
| ApeKI | GCWGC | 3 cut(s) | 182, 857, 1761 |
| AseI | ATTAAT | 2 cut(s) | 2268, 2961 |
| AsiGI | ACCGGT | 1 cut(s) | 2210 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 249, 715 |
| AspS9I | GGNCC | 3 cut(s) | 1418, 2019, 2321 |
| AsuC2I | CCSGG | 1 cut(s) | 2745 |
| AsuHPI | GGTGA | 9 cut(s) | 292, 416, 824, 1305, 1355, 1793, 1853, 2164, 2410 |
| AvaI | CYCGRG | 1 cut(s) | 1528 |
| AvaII | GGWCC | 3 cut(s) | 1418, 2019, 2321 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1723, 1755 |
| BbsI | GAAGAC | 2 cut(s) | 621, 1637 |
| Bbv12I | GWGCWC | 3 cut(s) | 451, 987, 2991 |
| BbvI | GCAGC | 3 cut(s) | 169, 844, 1748 |
| BccI | CCATC | 3 cut(s) | 1979, 2729, 2944 |
| BceAI | ACGGC | 1 cut(s) | 2138 |
| BciT130I | CCWGG | 1 cut(s) | 1890 |
| BciVI | GTATCC | 1 cut(s) | 1904 |
| BclI | TGATCA | 2 cut(s) | 142, 2509 |
| BcnI | CCSGG | 1 cut(s) | 2745 |
| BcoDI | GTCTC | 2 cut(s) | 1443, 2971 |
| BfaI | CTAG | 8 cut(s) | 459, 635, 702, 708, 1728, 1767, 2369, 2385 |
| BfmI | CTRYAG | 2 cut(s) | 169, 2833 |
| BfuI | GTATCC | 1 cut(s) | 1904 |
| BglII | AGATCT | 1 cut(s) | 499 |
| BisI | GCNGC | 3 cut(s) | 183, 858, 1762 |
| BlpI | GCTNAGC | 2 cut(s) | 132, 471 |
| BlsI | GCNGC | 3 cut(s) | 184, 859, 1763 |
| BmcAI | AGTACT | 1 cut(s) | 2357 |
| Bme1390I | CCNGG | 2 cut(s) | 1890, 2745 |
| Bme18I | GGWCC | 3 cut(s) | 1418, 2019, 2321 |
| BmeT110I | CYCGRG | 1 cut(s) | 1528 |
| BmgT120I | GGNCC | 3 cut(s) | 1418, 2019, 2321 |
| BmiI | GGNNCC | 1 cut(s) | 2586 |
| BmrFI | CCNGG | 2 cut(s) | 1890, 2745 |
| BmrI | ACTGGG | 1 cut(s) | 1053 |
| BmsI | GCATC | 1 cut(s) | 2854 |
| BmuI | ACTGGG | 1 cut(s) | 1053 |
| BoxI | GACNNNNGTC | 2 cut(s) | 2017, 3040 |
| BpiI | GAAGAC | 2 cut(s) | 621, 1637 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2459, 2491 |
| BpmI | CTGGAG | 2 cut(s) | 1284, 1872 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2341 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 132, 471 |
| BpuEI | CTTGAG | 4 cut(s) | 6, 480, 1146, 2428 |
| BpuMI | CCSGG | 1 cut(s) | 2745 |
| BsaAI | YACGTR | 1 cut(s) | 1154 |
| BsaBI | GATNNNNATC | 1 cut(s) | 630 |
| BsaJI | CCNNGG | 2 cut(s) | 1101, 1394 |
| BsaWI | WCCGGW | 2 cut(s) | 683, 2210 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 553, 583 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 919, 1281, 2149, 2172, 2259 |
| Bse118I | RCCGGY | 1 cut(s) | 2210 |
| Bse1I | ACTGG | 1 cut(s) | 1048 |
| Bse3DI | GCAATG | 2 cut(s) | 1689, 2713 |
| Bse8I | GATNNNNATC | 1 cut(s) | 630 |
| BseAI | TCCGGA | 1 cut(s) | 683 |
| BseBI | CCWGG | 1 cut(s) | 1890 |
| BseDI | CCNNGG | 2 cut(s) | 1101, 1394 |
| BseGI | GGATG | 6 cut(s) | 346, 692, 1337, 1573, 1799, 2287 |
| BseJI | GATNNNNATC | 1 cut(s) | 630 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 919, 1281, 2149, 2172, 2259 |
| BseMI | GCAATG | 2 cut(s) | 1689, 2713 |
| BseMII | CTCAG | 6 cut(s) | 123, 917, 981, 1290, 1423, 1958 |
| BseNI | ACTGG | 1 cut(s) | 1048 |
| BseRI | GAGGAG | 4 cut(s) | 935, 1007, 1264, 2586 |
| BseXI | GCAGC | 3 cut(s) | 169, 844, 1748 |
| BshFI | GGCC | 1 cut(s) | 1285 |
| BshTI | ACCGGT | 1 cut(s) | 2210 |
| BsiHKAI | GWGCWC | 3 cut(s) | 451, 987, 2991 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1528 |
| BsiSI | CCGG | 3 cut(s) | 684, 2211, 2744 |
| BslFI | GGGAC | 1 cut(s) | 1313 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 919, 1281, 2149, 2172, 2259 |
| BsmAI | GTCTC | 2 cut(s) | 1443, 2971 |
| BsmFI | GGGAC | 1 cut(s) | 1313 |
| BsnI | GGCC | 1 cut(s) | 1285 |
| BsoBI | CYCGRG | 1 cut(s) | 1528 |
| Bsp1286I | GDGCHC | 3 cut(s) | 451, 987, 2991 |
| Bsp13I | TCCGGA | 1 cut(s) | 683 |
| Bsp143I | GATC | 9 cut(s) | 142, 406, 499, 1012, 1190, 1616, 2026, 2311, 2509 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 132, 471 |
| BspANI | GGCC | 1 cut(s) | 1285 |
| BspCNI | CTCAG | 6 cut(s) | 124, 916, 982, 1289, 1422, 1959 |
| BspEI | TCCGGA | 1 cut(s) | 683 |
| BspHI | TCATGA | 2 cut(s) | 262, 1441 |
| BspLI | GGNNCC | 1 cut(s) | 2586 |
| BspPI | GGATC | 5 cut(s) | 401, 1020, 1198, 1624, 2319 |
| BspQI | GCTCTTC | 3 cut(s) | 456, 654, 1726 |
| BsrDI | GCAATG | 2 cut(s) | 1689, 2713 |
| BsrFI | RCCGGY | 1 cut(s) | 2210 |
| BsrI | ACTGG | 1 cut(s) | 1048 |
| BssAI | RCCGGY | 1 cut(s) | 2210 |
| BssECI | CCNNGG | 2 cut(s) | 1101, 1394 |
| BssMI | GATC | 9 cut(s) | 142, 406, 499, 1012, 1190, 1616, 2026, 2311, 2509 |
| BssT1I | CCWWGG | 2 cut(s) | 1101, 1394 |
| Bst2UI | CCWGG | 1 cut(s) | 1890 |
| Bst4CI | ACNGT | 4 cut(s) | 127, 663, 1470, 2019 |
| Bst6I | CTCTTC | 8 cut(s) | 456, 654, 703, 912, 1726, 2092, 2482, 2644 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2712 |
| BstBAI | YACGTR | 1 cut(s) | 1154 |
| BstC8I | GCNNGC | 3 cut(s) | 166, 2231, 2713 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1279, 2257 |
| BstF5I | GGATG | 6 cut(s) | 346, 692, 1337, 1573, 1799, 2287 |
| BstKTI | GATC | 9 cut(s) | 145, 409, 502, 1015, 1193, 1619, 2029, 2314, 2512 |
| BstMAI | GTCTC | 2 cut(s) | 1443, 2971 |
| BstMBI | GATC | 9 cut(s) | 142, 406, 499, 1012, 1190, 1616, 2026, 2311, 2509 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 866, 938, 1715, 2122, 2239, 2675, 2712 |
| BstNI | CCWGG | 1 cut(s) | 1890 |
| BstNSI | RCATGY | 1 cut(s) | 1701 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 2017, 3040 |
| BstSCI | CCNGG | 2 cut(s) | 1888, 2743 |
| BstSFI | CTRYAG | 2 cut(s) | 169, 2833 |
| BstV1I | GCAGC | 3 cut(s) | 169, 844, 1748 |
| BstV2I | GAAGAC | 2 cut(s) | 621, 1637 |
| BstX2I | RGATCY | 4 cut(s) | 499, 1190, 1616, 2311 |
| BstYI | RGATCY | 4 cut(s) | 499, 1190, 1616, 2311 |
| BsuI | GTATCC | 1 cut(s) | 1904 |
| BsuRI | GGCC | 1 cut(s) | 1285 |
| BtsCI | GGATG | 6 cut(s) | 346, 692, 1337, 1573, 1799, 2287 |
| BtsIMutI | CAGTG | 1 cut(s) | 1828 |
| Cac8I | GCNNGC | 3 cut(s) | 166, 2231, 2713 |
| CciI | TCATGA | 2 cut(s) | 262, 1441 |
| Cfr10I | RCCGGY | 1 cut(s) | 2210 |
| Cfr13I | GGNCC | 3 cut(s) | 1418, 2019, 2321 |
| Csp6I | GTAC | 1 cut(s) | 2356 |
| CspAI | ACCGGT | 1 cut(s) | 2210 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2179, 2214 |
| CviAII | CATG | 9 cut(s) | 263, 395, 914, 1442, 1698, 1774, 2132, 2513, 2573 |
| CviQI | GTAC | 1 cut(s) | 2356 |
| DpnI | GATC | 9 cut(s) | 144, 408, 501, 1014, 1192, 1618, 2028, 2313, 2511 |
| DpnII | GATC | 9 cut(s) | 142, 406, 499, 1012, 1190, 1616, 2026, 2311, 2509 |
| DraI | TTTAAA | 1 cut(s) | 1905 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1398, 2882 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1398, 2882 |
| Eam1104I | CTCTTC | 8 cut(s) | 456, 654, 703, 912, 1726, 2092, 2482, 2644 |
| EarI | CTCTTC | 8 cut(s) | 456, 654, 703, 912, 1726, 2092, 2482, 2644 |
| Eco130I | CCWWGG | 2 cut(s) | 1101, 1394 |
| Eco47I | GGWCC | 3 cut(s) | 1418, 2019, 2321 |
| Eco57I | CTGAAG | 1 cut(s) | 2115 |
| Eco88I | CYCGRG | 1 cut(s) | 1528 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1279, 2257 |
| EcoRII | CCWGG | 1 cut(s) | 1888 |
| EcoT14I | CCWWGG | 2 cut(s) | 1101, 1394 |
| EcoT22I | ATGCAT | 2 cut(s) | 2307, 2492 |
| ErhI | CCWWGG | 2 cut(s) | 1101, 1394 |
| FaeI | CATG | 9 cut(s) | 266, 398, 917, 1445, 1701, 1777, 2135, 2516, 2576 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1926, 1958, 2342, 2374 |
| FaqI | GGGAC | 1 cut(s) | 1313 |
| FatI | CATG | 9 cut(s) | 262, 394, 913, 1441, 1697, 1773, 2131, 2512, 2572 |
| FauNDI | CATATG | 1 cut(s) | 2307 |
| FbaI | TGATCA | 2 cut(s) | 142, 2509 |
| FblI | GTMKAC | 2 cut(s) | 1430, 2279 |
| Fnu4HI | GCNGC | 3 cut(s) | 183, 858, 1762 |
| FokI | GGATG | 6 cut(s) | 353, 679, 1324, 1560, 1786, 2274 |
| Fsp4HI | GCNGC | 3 cut(s) | 183, 858, 1762 |
| FspBI | CTAG | 8 cut(s) | 459, 635, 702, 708, 1728, 1767, 2369, 2385 |
| GluI | GCNGC | 3 cut(s) | 183, 858, 1762 |
| GsuI | CTGGAG | 2 cut(s) | 1284, 1872 |
| HaeIII | GGCC | 1 cut(s) | 1285 |
| HapII | CCGG | 3 cut(s) | 684, 2211, 2744 |
| Hin1II | CATG | 9 cut(s) | 266, 398, 917, 1445, 1701, 1777, 2135, 2516, 2576 |
| HincII | GTYRAC | 1 cut(s) | 1473 |
| HindII | GTYRAC | 1 cut(s) | 1473 |
| HindIII | AAGCTT | 4 cut(s) | 234, 301, 2231, 2338 |
| HpaII | CCGG | 3 cut(s) | 684, 2211, 2744 |
| HphI | GGTGA | 9 cut(s) | 292, 416, 824, 1305, 1355, 1793, 1853, 2164, 2410 |
| Hpy166II | GTNNAC | 7 cut(s) | 123, 1431, 1473, 2012, 2137, 2280, 2391 |
| Hpy8I | GTNNAC | 7 cut(s) | 123, 1431, 1473, 2012, 2137, 2280, 2391 |
| HpyAV | CCTTC | 9 cut(s) | 46, 277, 681, 1003, 1497, 1641, 1813, 1919, 2165 |
| HpyCH4III | ACNGT | 4 cut(s) | 127, 663, 1470, 2019 |
| HpyCH4IV | ACGT | 2 cut(s) | 1153, 1671 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 866, 938, 1715, 2122, 2239, 2675, 2712 |
| HpySE526I | ACGT | 2 cut(s) | 1153, 1671 |
| Hsp92II | CATG | 9 cut(s) | 266, 398, 917, 1445, 1701, 1777, 2135, 2516, 2576 |
| Kpn2I | TCCGGA | 1 cut(s) | 683 |
| Ksp22I | TGATCA | 2 cut(s) | 142, 2509 |
| Kzo9I | GATC | 9 cut(s) | 142, 406, 499, 1012, 1190, 1616, 2026, 2311, 2509 |
| LguI | GCTCTTC | 3 cut(s) | 456, 654, 1726 |
| LmnI | GCTCC | 3 cut(s) | 1277, 1891, 2590 |
| Lsp1109I | GCAGC | 3 cut(s) | 169, 844, 1748 |
| LweI | GCATC | 1 cut(s) | 2854 |
| MaeI | CTAG | 8 cut(s) | 459, 635, 702, 708, 1728, 1767, 2369, 2385 |
| MaeII | ACGT | 2 cut(s) | 1153, 1671 |
| MaeIII | GTNAC | 9 cut(s) | 269, 379, 1311, 1361, 1831, 1879, 2825, 2873, 2894 |
| MalI | GATC | 9 cut(s) | 144, 408, 501, 1014, 1192, 1618, 2028, 2313, 2511 |
| MboI | GATC | 9 cut(s) | 142, 406, 499, 1012, 1190, 1616, 2026, 2311, 2509 |
| MfeI | CAATTG | 2 cut(s) | 585, 2982 |
| MflI | RGATCY | 4 cut(s) | 499, 1190, 1616, 2311 |
| MhlI | GDGCHC | 3 cut(s) | 451, 987, 2991 |
| MlyI | GAGTC | 7 cut(s) | 560, 965, 1679, 1923, 2739, 2892, 2972 |
| MmeI | TCCRAC | 5 cut(s) | 38, 171, 248, 933, 2299 |
| Mph1103I | ATGCAT | 2 cut(s) | 2307, 2492 |
| MroI | TCCGGA | 1 cut(s) | 683 |
| MroXI | GAANNNNTTC | 2 cut(s) | 249, 715 |
| MslI | CAYNNNNRTG | 3 cut(s) | 150, 1368, 2396 |
| MspI | CCGG | 3 cut(s) | 684, 2211, 2744 |
| MspR9I | CCNGG | 2 cut(s) | 1890, 2745 |
| MunI | CAATTG | 2 cut(s) | 585, 2982 |
| MvaI | CCWGG | 1 cut(s) | 1890 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 866, 938, 1715, 2122, 2239, 2675, 2712 |
| NciI | CCSGG | 1 cut(s) | 2745 |
| NdeI | CATATG | 1 cut(s) | 2307 |
| NdeII | GATC | 9 cut(s) | 142, 406, 499, 1012, 1190, 1616, 2026, 2311, 2509 |
| NlaIII | CATG | 9 cut(s) | 266, 398, 917, 1445, 1701, 1777, 2135, 2516, 2576 |
| NlaIV | GGNNCC | 1 cut(s) | 2586 |
| NmeAIII | GCCGAG | 1 cut(s) | 2561 |
| NmuCI | GTSAC | 4 cut(s) | 1311, 1361, 1831, 2873 |
| NsiI | ATGCAT | 2 cut(s) | 2307, 2492 |
| NspI | RCATGY | 1 cut(s) | 1701 |
| OliI | CACNNNNGTG | 3 cut(s) | 150, 1368, 2396 |
| PagI | TCATGA | 2 cut(s) | 262, 1441 |
| PciI | ACATGT | 1 cut(s) | 1697 |
| PciSI | GCTCTTC | 3 cut(s) | 456, 654, 1726 |
| PdmI | GAANNNNTTC | 2 cut(s) | 249, 715 |
| PfeI | GAWTC | 8 cut(s) | 344, 506, 893, 968, 1157, 1347, 1956, 2054 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2149 |
| PinAI | ACCGGT | 1 cut(s) | 2210 |
| PkrI | GCNGC | 3 cut(s) | 184, 859, 1763 |
| PleI | GAGTC | 7 cut(s) | 559, 964, 1679, 1923, 2738, 2891, 2972 |
| PpsI | GAGTC | 7 cut(s) | 559, 964, 1679, 1923, 2738, 2891, 2972 |
| Ppu21I | YACGTR | 1 cut(s) | 1154 |
| PscI | ACATGT | 1 cut(s) | 1697 |
| PshAI | GACNNNNGTC | 2 cut(s) | 2017, 3040 |
| PshBI | ATTAAT | 2 cut(s) | 2268, 2961 |
| PsiI | TTATAA | 1 cut(s) | 2919 |
| Psp6I | CCWGG | 1 cut(s) | 1888 |
| PspGI | CCWGG | 1 cut(s) | 1888 |
| PspN4I | GGNNCC | 1 cut(s) | 2586 |
| PspPI | GGNCC | 3 cut(s) | 1418, 2019, 2321 |
| PsuI | RGATCY | 4 cut(s) | 499, 1190, 1616, 2311 |
| RsaI | GTAC | 1 cut(s) | 2357 |
| RsaNI | GTAC | 1 cut(s) | 2356 |
| RseI | CAYNNNNRTG | 3 cut(s) | 150, 1368, 2396 |
| SapI | GCTCTTC | 3 cut(s) | 456, 654, 1726 |
| SatI | GCNGC | 3 cut(s) | 183, 858, 1762 |
| Sau3AI | GATC | 9 cut(s) | 142, 406, 499, 1012, 1190, 1616, 2026, 2311, 2509 |
| Sau96I | GGNCC | 3 cut(s) | 1418, 2019, 2321 |
| ScaI | AGTACT | 1 cut(s) | 2357 |
| SchI | GAGTC | 7 cut(s) | 560, 965, 1679, 1923, 2739, 2892, 2972 |
| ScrFI | CCNGG | 2 cut(s) | 1890, 2745 |
| SduI | GDGCHC | 3 cut(s) | 451, 987, 2991 |
| SfaNI | GCATC | 1 cut(s) | 2854 |
| SfcI | CTRYAG | 2 cut(s) | 169, 2833 |
| SinI | GGWCC | 3 cut(s) | 1418, 2019, 2321 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 150, 1368, 2396 |
| SmlI | CTYRAG | 4 cut(s) | 21, 495, 1161, 2407 |
| SmoI | CTYRAG | 4 cut(s) | 21, 495, 1161, 2407 |
| SspMI | CTAG | 8 cut(s) | 459, 635, 702, 708, 1728, 1767, 2369, 2385 |
| StyD4I | CCNGG | 2 cut(s) | 1888, 2743 |
| StyI | CCWWGG | 2 cut(s) | 1101, 1394 |
| TaaI | ACNGT | 4 cut(s) | 127, 663, 1470, 2019 |
| TaiI | ACGT | 2 cut(s) | 1156, 1674 |
| TaqI | TCGA | 2 cut(s) | 2090, 2373 |
| TaqII | GACCGA | 1 cut(s) | 3030 |
| TatI | WGTACW | 1 cut(s) | 2355 |
| TfiI | GAWTC | 8 cut(s) | 344, 506, 893, 968, 1157, 1347, 1956, 2054 |
| TscAI | CASTG | 1 cut(s) | 1828 |
| TseFI | GTSAC | 4 cut(s) | 1311, 1361, 1831, 2873 |
| TseI | GCWGC | 3 cut(s) | 182, 857, 1761 |
| Tsp45I | GTSAC | 4 cut(s) | 1311, 1361, 1831, 2873 |
| TspRI | CASTG | 1 cut(s) | 1828 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2149 |
| VpaK11BI | GGWCC | 3 cut(s) | 1418, 2019, 2321 |
| VspI | ATTAAT | 2 cut(s) | 2268, 2961 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1279, 2257 |
| XbaI | TCTAGA | 3 cut(s) | 634, 707, 1727 |
| XceI | RCATGY | 1 cut(s) | 1701 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 117 |
| XmiI | GTMKAC | 2 cut(s) | 1430, 2279 |
| XmnI | GAANNNNTTC | 2 cut(s) | 249, 715 |
| XspI | CTAG | 8 cut(s) | 459, 635, 702, 708, 1728, 1767, 2369, 2385 |
| ZrmI | AGTACT | 1 cut(s) | 2357 |
| Zsp2I | ATGCAT | 2 cut(s) | 2307, 2492 |