gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 14 |
| AatII | GACGTC | 1 cut(s) | 152 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 635 |
| AclWI | GGATC | 2 cut(s) | 41, 495 |
| AcsI | RAATTY | 3 cut(s) | 103, 599, 689 |
| AcuI | CTGAAG | 2 cut(s) | 113, 207 |
| AcyI | GRCGYC | 1 cut(s) | 149 |
| AfaI | GTAC | 2 cut(s) | 127, 575 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 635 |
| AgsI | TTSAA | 8 cut(s) | 83, 213, 326, 374, 541, 617, 658, 672 |
| AluBI | AGCT | 3 cut(s) | 88, 550, 560 |
| AluI | AGCT | 3 cut(s) | 88, 550, 560 |
| Alw26I | GTCTC | 1 cut(s) | 168 |
| AlwI | GGATC | 2 cut(s) | 41, 495 |
| Ama87I | CYCGRG | 1 cut(s) | 551 |
| AoxI | GGCC | 2 cut(s) | 785, 839 |
| ApoI | RAATTY | 3 cut(s) | 103, 599, 689 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 146, 178 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 118 |
| AsuHPI | GGTGA | 1 cut(s) | 833 |
| AsuII | TTCGAA | 1 cut(s) | 740 |
| AvaI | CYCGRG | 1 cut(s) | 551 |
| BbsI | GAAGAC | 1 cut(s) | 234 |
| BccI | CCATC | 3 cut(s) | 152, 431, 464 |
| BclI | TGATCA | 1 cut(s) | 582 |
| BcoDI | GTCTC | 1 cut(s) | 168 |
| BfaI | CTAG | 1 cut(s) | 783 |
| BglII | AGATCT | 1 cut(s) | 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 551 |
| BpiI | GAAGAC | 1 cut(s) | 234 |
| Bpu10I | CCTNAGC | 1 cut(s) | 561 |
| Bpu14I | TTCGAA | 1 cut(s) | 740 |
| BpuEI | CTTGAG | 1 cut(s) | 428 |
| BsaHI | GRCGYC | 1 cut(s) | 149 |
| BsaI | GGTCTC | 1 cut(s) | 168 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 236, 266, 557, 587 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 635 |
| BseGI | GGATG | 2 cut(s) | 367, 475 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 635 |
| BseMII | CTCAG | 1 cut(s) | 516 |
| BseRI | GAGGAG | 2 cut(s) | 311, 371 |
| BshFI | GGCC | 2 cut(s) | 787, 841 |
| BsiHKCI | CYCGRG | 1 cut(s) | 551 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 635 |
| BsmAI | GTCTC | 1 cut(s) | 168 |
| BsmI | GAATGC | 1 cut(s) | 757 |
| BsnI | GGCC | 2 cut(s) | 787, 841 |
| Bso31I | GGTCTC | 1 cut(s) | 168 |
| BsoBI | CYCGRG | 1 cut(s) | 551 |
| Bsp119I | TTCGAA | 1 cut(s) | 740 |
| Bsp1407I | TGTACA | 1 cut(s) | 573 |
| Bsp143I | GATC | 5 cut(s) | 46, 131, 447, 500, 582 |
| BspANI | GGCC | 2 cut(s) | 787, 841 |
| BspCNI | CTCAG | 1 cut(s) | 517 |
| BspHI | TCATGA | 1 cut(s) | 811 |
| BspPI | GGATC | 2 cut(s) | 41, 495 |
| BspT104I | TTCGAA | 1 cut(s) | 740 |
| BspTNI | GGTCTC | 1 cut(s) | 168 |
| BsrGI | TGTACA | 1 cut(s) | 573 |
| BssMI | GATC | 5 cut(s) | 46, 131, 447, 500, 582 |
| BssNI | GRCGYC | 1 cut(s) | 149 |
| Bst4CI | ACNGT | 1 cut(s) | 573 |
| Bst6I | CTCTTC | 2 cut(s) | 501, 673 |
| BstACI | GRCGYC | 1 cut(s) | 149 |
| BstAUI | TGTACA | 1 cut(s) | 573 |
| BstBI | TTCGAA | 1 cut(s) | 740 |
| BstDEI | CTNAG | 2 cut(s) | 525, 561 |
| BstF5I | GGATG | 2 cut(s) | 367, 475 |
| BstKTI | GATC | 5 cut(s) | 49, 134, 450, 503, 585 |
| BstMAI | GTCTC | 1 cut(s) | 168 |
| BstMBI | GATC | 5 cut(s) | 46, 131, 447, 500, 582 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 317 |
| BstNSI | RCATGY | 1 cut(s) | 210 |
| BstV2I | GAAGAC | 1 cut(s) | 234 |
| BstX2I | RGATCY | 1 cut(s) | 131 |
| BstYI | RGATCY | 1 cut(s) | 131 |
| BsuRI | GGCC | 2 cut(s) | 787, 841 |
| BtsCI | GGATG | 2 cut(s) | 367, 475 |
| CciI | TCATGA | 1 cut(s) | 811 |
| Csp6I | GTAC | 2 cut(s) | 126, 574 |
| CviAII | CATG | 4 cut(s) | 207, 224, 767, 812 |
| CviJI | RGCY | 7 cut(s) | 88, 550, 560, 628, 654, 787, 841 |
| CviKI_1 | RGCY | 7 cut(s) | 88, 550, 560, 628, 654, 787, 841 |
| CviQI | GTAC | 2 cut(s) | 126, 574 |
| DdeI | CTNAG | 2 cut(s) | 525, 561 |
| DpnI | GATC | 5 cut(s) | 48, 133, 449, 502, 584 |
| DpnII | GATC | 5 cut(s) | 46, 131, 447, 500, 582 |
| Eam1104I | CTCTTC | 2 cut(s) | 501, 673 |
| EarI | CTCTTC | 2 cut(s) | 501, 673 |
| Eco31I | GGTCTC | 1 cut(s) | 168 |
| Eco57I | CTGAAG | 2 cut(s) | 113, 207 |
| Eco88I | CYCGRG | 1 cut(s) | 551 |
| EcoT22I | ATGCAT | 1 cut(s) | 208 |
| FaeI | CATG | 4 cut(s) | 210, 227, 770, 815 |
| FatI | CATG | 4 cut(s) | 206, 223, 766, 811 |
| FbaI | TGATCA | 1 cut(s) | 582 |
| FokI | GGATG | 2 cut(s) | 374, 482 |
| FspBI | CTAG | 1 cut(s) | 783 |
| HaeIII | GGCC | 2 cut(s) | 787, 841 |
| Hin1I | GRCGYC | 1 cut(s) | 149 |
| Hin1II | CATG | 4 cut(s) | 210, 227, 770, 815 |
| HincII | GTYRAC | 1 cut(s) | 511 |
| HindII | GTYRAC | 1 cut(s) | 511 |
| HinfI | GANTC | 5 cut(s) | 4, 171, 338, 347, 441 |
| HphI | GGTGA | 1 cut(s) | 833 |
| Hpy166II | GTNNAC | 1 cut(s) | 511 |
| Hpy188I | TCNGA | 5 cut(s) | 9, 51, 187, 343, 352 |
| Hpy188III | TCNNGA | 2 cut(s) | 445, 812 |
| Hpy8I | GTNNAC | 1 cut(s) | 511 |
| HpyAV | CCTTC | 3 cut(s) | 182, 535, 673 |
| HpyCH4III | ACNGT | 1 cut(s) | 573 |
| HpyCH4IV | ACGT | 1 cut(s) | 149 |
| HpyCH4V | TGCA | 4 cut(s) | 206, 242, 457, 755 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 317 |
| HpyF3I | CTNAG | 2 cut(s) | 525, 561 |
| HpySE526I | ACGT | 1 cut(s) | 149 |
| Hsp92I | GRCGYC | 1 cut(s) | 149 |
| Hsp92II | CATG | 4 cut(s) | 210, 227, 770, 815 |
| Ksp22I | TGATCA | 1 cut(s) | 582 |
| Kzo9I | GATC | 5 cut(s) | 46, 131, 447, 500, 582 |
| LpnPI | CCDG | 2 cut(s) | 108, 394 |
| MaeI | CTAG | 1 cut(s) | 783 |
| MaeII | ACGT | 1 cut(s) | 149 |
| MaeIII | GTNAC | 1 cut(s) | 682 |
| MalI | GATC | 5 cut(s) | 48, 133, 449, 502, 584 |
| MboI | GATC | 5 cut(s) | 46, 131, 447, 500, 582 |
| MfeI | CAATTG | 1 cut(s) | 756 |
| MflI | RGATCY | 1 cut(s) | 131 |
| MluCI | AATT | 6 cut(s) | 103, 398, 599, 676, 689, 756 |
| MlyI | GAGTC | 2 cut(s) | 13, 435 |
| MnlI | CCTC | 8 cut(s) | 283, 289, 292, 349, 352, 460, 474, 547 |
| Mph1103I | ATGCAT | 1 cut(s) | 208 |
| MroXI | GAANNNNTTC | 1 cut(s) | 118 |
| MseI | TTAA | 5 cut(s) | 65, 408, 696, 708, 798 |
| MslI | CAYNNNNRTG | 2 cut(s) | 771, 816 |
| MunI | CAATTG | 1 cut(s) | 756 |
| Mva1269I | GAATGC | 1 cut(s) | 757 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 317 |
| NdeII | GATC | 5 cut(s) | 46, 131, 447, 500, 582 |
| NlaIII | CATG | 4 cut(s) | 210, 227, 770, 815 |
| NmuCI | GTSAC | 1 cut(s) | 682 |
| NsiI | ATGCAT | 1 cut(s) | 208 |
| NspI | RCATGY | 1 cut(s) | 210 |
| NspV | TTCGAA | 1 cut(s) | 740 |
| PaeR7I | CTCGAG | 1 cut(s) | 551 |
| PagI | TCATGA | 1 cut(s) | 811 |
| PctI | GAATGC | 1 cut(s) | 757 |
| PdmI | GAANNNNTTC | 1 cut(s) | 118 |
| PfeI | GAWTC | 3 cut(s) | 171, 338, 347 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 635 |
| PleI | GAGTC | 2 cut(s) | 12, 435 |
| PpsI | GAGTC | 2 cut(s) | 12, 435 |
| PsiI | TTATAA | 1 cut(s) | 14 |
| PspXI | VCTCGAGB | 1 cut(s) | 551 |
| PsuI | RGATCY | 1 cut(s) | 131 |
| RsaI | GTAC | 2 cut(s) | 127, 575 |
| RsaNI | GTAC | 2 cut(s) | 126, 574 |
| RseI | CAYNNNNRTG | 2 cut(s) | 771, 816 |
| SaqAI | TTAA | 5 cut(s) | 65, 408, 696, 708, 798 |
| Sau3AI | GATC | 5 cut(s) | 46, 131, 447, 500, 582 |
| SchI | GAGTC | 2 cut(s) | 13, 435 |
| SetI | ASST | 8 cut(s) | 90, 127, 152, 218, 294, 552, 562, 797 |
| Sfr274I | CTCGAG | 1 cut(s) | 551 |
| SfuI | TTCGAA | 1 cut(s) | 740 |
| SlaI | CTCGAG | 1 cut(s) | 551 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 771, 816 |
| SmlI | CTYRAG | 2 cut(s) | 443, 551 |
| SmoI | CTYRAG | 2 cut(s) | 443, 551 |
| Sse9I | AATT | 6 cut(s) | 103, 398, 599, 676, 689, 756 |
| SspMI | CTAG | 1 cut(s) | 783 |
| TaaI | ACNGT | 1 cut(s) | 573 |
| TaiI | ACGT | 1 cut(s) | 152 |
| TaqI | TCGA | 3 cut(s) | 499, 552, 740 |
| TasI | AATT | 6 cut(s) | 103, 398, 599, 676, 689, 756 |
| TatI | WGTACW | 1 cut(s) | 573 |
| TfiI | GAWTC | 3 cut(s) | 171, 338, 347 |
| Tru1I | TTAA | 5 cut(s) | 65, 408, 696, 708, 798 |
| Tru9I | TTAA | 5 cut(s) | 65, 408, 696, 708, 798 |
| TseFI | GTSAC | 1 cut(s) | 682 |
| Tsp45I | GTSAC | 1 cut(s) | 682 |
| TspDTI | ATGAA | 5 cut(s) | 163, 240, 351, 609, 764 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 635 |
| XapI | RAATTY | 3 cut(s) | 103, 599, 689 |
| XceI | RCATGY | 1 cut(s) | 210 |
| XhoI | CTCGAG | 1 cut(s) | 551 |
| XmnI | GAANNNNTTC | 1 cut(s) | 118 |
| XspI | CTAG | 1 cut(s) | 783 |
| ZraI | GACGTC | 1 cut(s) | 150 |
| Zsp2I | ATGCAT | 1 cut(s) | 208 |