Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000703

Physical Location & Seq

Genomic Coordinates Forward (+)

56815647 .. 56826526

Gene Structure 10880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00206960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAGCTGTGGAAAGGTAAAAAGCCAAATGTTGGATACTTTCATATTTTTGGCAGCCCTTGCTACATTTTACGTGATAGAGAACATCTTGGAAAATTTGATGCTAGAAGTGACGATGGTGTTTTCTTGGGATATTCTCTCGAACAGTAGAGCTTATAGGGTTTACAATAAAAGAACCCGAGTTGTTATGGAATCCATTAATGTTTCTATTGATGATCAATGTGTAAAACGGGAAGAATCATATGCAGATCCATCACCCTCCTCTATCACTCCACCACTAATTGCGAAGCCTCATCCGATGAAGAGGAAGAGGAGATTCCCGACAACATTTTTGAACCAGCTCCCATCCAAAGGAAAGGATTCAAGCAAGTTCAAAAGGACCACTCCTCTCAAGATATCATCGGAAATCGAAAGATGGTCCGACAACAAGGAGAAAAGCTACGGCTCGGGTAAGTACCTGCGAGGTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.98

Weight (kDa)

9.78

Isoelectric Point (pI)

65.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12811 FvH4_1g24841 FvH4_2g03460 FvH4_2g30311 FvH4_3g16731 FvH4_3g16931 FvH4_3g21841 FvH4_3g31692 FvH4_3g35772 FvH4_3g37482 FvH4_4g03991 FvH4_4g08241 FvH4_4g09290 FvH4_4g14651 FvH4_4g18201 FvH4_5g17842 FvH4_5g18993 FvH4_6g19711 FvH4_6g36421 FvH4_6g45941 FvH4_6g45942 FvH4_7g03942 FvH4_7g10731 FvH4_7g33141
prunus_persica	Prupe.1G185200_v2.0.a1
pyrus_communis	pycom01g05340 pycom05g05480 pycom14g05470
rosa_chinensis	RchiOBHm_Chr2g0143791 RchiOBHm_Chr2g0164531 RchiOBHm_Chr2g0174931 RchiOBHm_Chr3g0456701 RchiOBHm_Chr3g0462591 RchiOBHm_Chr3g0488601 RchiOBHm_Chr3g0489031 RchiOBHm_Chr4g0421211 RchiOBHm_Chr4g0421221 RchiOBHm_Chr6g0278461 RchiOBHm_Chr7g0183661 RchiOBHm_Chr7g0219131
rosa_multiflora	Rmu_co8327135.1_g000001 Rmu_co8385793.1_g000001 Rmu_co8398081.1_g000001 Rmu_sc0000721.1_g000029 Rmu_sc0000898.1_g000075 Rmu_sc0001156.1_g000001 Rmu_sc0003339.1_g000002 Rmu_sc0003505.1_g000007 Rmu_sc0003673.1_g000008 Rmu_sc0005071.1_g000010 Rmu_sc0005087.1_g000005 Rmu_sc0005350.1_g000007 Rmu_ssc0000118.1_g000016 Rmu_ssc0000162.1_g000012
rosa_roxburghii	Rroxscaffold_2G00123320 Rroxscaffold_3G00238750 Rroxscaffold_4G00300220 Rroxscaffold_5G00382590 Rroxscaffold_7G00206960
rosa_samantha	Rh1CG187800 Rh2BG032400 Rh4DG325100 Rh5CG260800 Rh6AG171500 Rh6AG472000
rosa_wichuraiana	Rw1G003490 Rw1G007660 Rw2G031060 Rw3G014070 Rw3G014230 Rw6G006100 Rw6G019680 Rw7G016530 Rw7G032660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	465
AccB7I	CCANNNNNTGG	1 cut(s)	31
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	94
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	2 cut(s)	31, 350
AgsI	TTSAA	3 cut(s)	334, 363, 373
AluBI	AGCT	4 cut(s)	6, 152, 340, 438
AluI	AGCT	4 cut(s)	6, 152, 340, 438
AlwI	GGATC	1 cut(s)	242
Ama87I	CYCGRG	2 cut(s)	177, 445
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	94
ArsI	GACNNNNNNTTYG	2 cut(s)	313, 345
AseI	ATTAAT	1 cut(s)	198
Asp700I	GAANNNNTTC	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	378, 417
AsuHPI	GGTGA	1 cut(s)	246
AvaI	CYCGRG	2 cut(s)	177, 445
AvaII	GGWCC	2 cut(s)	378, 417
BbvI	GCAGC	1 cut(s)	65
BccI	CCATC	4 cut(s)	109, 259, 352, 408
BceAI	ACGGC	1 cut(s)	457
BciVI	GTATCC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	214
BfaI	CTAG	1 cut(s)	104
BfuAI	ACCTGC	1 cut(s)	465
BfuI	GTATCC	1 cut(s)	28
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	378, 417
BmeT110I	CYCGRG	2 cut(s)	177, 445
BmgT120I	GGNCC	2 cut(s)	378, 417
BmsI	GCATC	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	374
BsaAI	YACGTR	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 350
BseGI	GGATG	2 cut(s)	292, 344
BseLI	CCNNNNNNNGG	2 cut(s)	31, 350
BseRI	GAGGAG	3 cut(s)	250, 325, 375
BseXI	GCAGC	1 cut(s)	65
BsiHKCI	CYCGRG	2 cut(s)	177, 445
BslI	CCNNNNNNNGG	2 cut(s)	31, 350
BsoBI	CYCGRG	2 cut(s)	177, 445
Bsp143I	GATC	2 cut(s)	214, 247
BspMI	ACCTGC	1 cut(s)	465
BspPI	GGATC	1 cut(s)	242
BssMI	GATC	2 cut(s)	214, 247
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	2 cut(s)	296, 302
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstBAI	YACGTR	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	292, 344
BstKTI	GATC	2 cut(s)	217, 250
BstMBI	GATC	2 cut(s)	214, 247
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	65
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuI	GTATCC	1 cut(s)	28
BtsCI	GGATG	2 cut(s)	292, 344
BveI	ACCTGC	1 cut(s)	465
Cfr13I	GGNCC	2 cut(s)	378, 417
Csp6I	GTAC	1 cut(s)	454
CviJI	RGCY	8 cut(s)	6, 24, 56, 152, 289, 340, 438, 444
CviKI_1	RGCY	8 cut(s)	6, 24, 56, 152, 289, 340, 438, 444
CviQI	GTAC	1 cut(s)	454
DpnI	GATC	2 cut(s)	216, 249
DpnII	GATC	2 cut(s)	214, 247
Eam1104I	CTCTTC	2 cut(s)	296, 302
EarI	CTCTTC	2 cut(s)	296, 302
Eco32I	GATATC	1 cut(s)	396
Eco47I	GGWCC	2 cut(s)	378, 417
Eco88I	CYCGRG	2 cut(s)	177, 445
EcoRV	GATATC	1 cut(s)	396
FaiI	YATR	5 cut(s)	44, 156, 188, 241, 243
FauNDI	CATATG	1 cut(s)	241
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	2 cut(s)	279, 331
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	104
GluI	GCNGC	1 cut(s)	54
HinfI	GANTC	4 cut(s)	191, 236, 315, 359
HphI	GGTGA	1 cut(s)	246
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	3 cut(s)	297, 403, 421
Hpy188III	TCNNGA	3 cut(s)	139, 319, 391
Hpy8I	GTNNAC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpySE526I	ACGT	1 cut(s)	72
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	214, 247
LmnI	GCTCC	1 cut(s)	345
LpnPI	CCDG	1 cut(s)	350
Lsp1109I	GCAGC	1 cut(s)	65
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	2 cut(s)	216, 249
MboI	GATC	2 cut(s)	214, 247
MboII	GAAGA	3 cut(s)	245, 313, 319
MflI	RGATCY	1 cut(s)	247
MluCI	AATT	2 cut(s)	94, 279
MmeI	TCCRAC	2 cut(s)	12, 444
MnlI	CCTC	7 cut(s)	268, 271, 297, 300, 303, 396, 455
MroXI	GAANNNNTTC	1 cut(s)	358
MseI	TTAA	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeI	CATATG	1 cut(s)	241
NdeII	GATC	2 cut(s)	214, 247
NmuCI	GTSAC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	358
PfeI	GAWTC	4 cut(s)	191, 236, 315, 359
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	55
Ppu21I	YACGTR	1 cut(s)	73
PshBI	ATTAAT	1 cut(s)	198
PspPI	GGNCC	2 cut(s)	378, 417
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	2 cut(s)	214, 247
Sau96I	GGNCC	2 cut(s)	378, 417
SetI	ASST	8 cut(s)	8, 18, 75, 154, 342, 440, 459, 466
SfaNI	GCATC	1 cut(s)	90
SinI	GGWCC	2 cut(s)	378, 417
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	2 cut(s)	94, 279
SspMI	CTAG	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	2 cut(s)	140, 408
TasI	AATT	2 cut(s)	94, 279
TfiI	GAWTC	4 cut(s)	191, 236, 315, 359
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	1 cut(s)	53
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	2 cut(s)	31, 314
Van91I	CCANNNNNTGG	1 cut(s)	31
VpaK11BI	GGWCC	2 cut(s)	378, 417
VspI	ATTAAT	1 cut(s)	198
XapI	RAATTY	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	358
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.