Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000703

Physical Location & Seq

Genomic Coordinates Forward (+)

10569487 .. 10582242

Gene Structure 12756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g16731.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTTGATAACAAGGTCGTTGGAAGAGAGAAAGACAAAACTCACCACAAAAATCCCAAAGAGACTCGCCGGGGATGAATCTTTGCTCATGTCTAAAAGATGGTTGTTCGGCTCACACCGTTGGGATCAACAAGTGCTACTGGGATGGCGTGGAACGCCGTTGGATCAGCTAGAGCTACCCGCTGACCTTCGTGGCTCCATTGAAGACCTTCGTGGCTTCAAGTCCTTCGTGGCGTTTCAAGACCTTCATGGCTTCAACGACTTCCGTGGCGTTATCATCCTTCGTGGCAACAAAGACCTTCGTGGCTTTGTATTACACTTGACCGTGTTCTTCAAGTGTGAAAGTCTTTTGGATTCATTCTTACAAAACATTTCCCTCAACAAACTTACAGAGCCTGAAGATCTAGTGGCCTACGGATACACTCACCGGTCCTATGAATTTCGACGTTGGCTGAAGCTCTCACACTCAACTGCAATCGTGAAGACTCAAGAACAAGCAGACAAGGTGGTCCTCTTTGATCATTTTGCTGCCGACTGGGCTGAACGTACTGGAATTGCACAAATAGATACTGCAACCAACTTGAATCACTTCAAGATCCCACAATCCAGTGTCTACAAAAGACCCAATCAGTCTGAGACCGAGGGCGACCCAGAGAAAGGAGACGGTGATGGCACCGGTAGAATAGGCATCACCTCCGCCAGAGGAGACCCCACAATTGGCGAAGATGGTGATGACGACATGCTCCTTCATGTTGAAGGGACCGGGGTTCAAGTTGAACTTAAAGCCCAACAAATTGAAGTCCTTGTTTGGCAGAGTTTTGGCCATGAACTTTCCGATTGGCAAGACAGCGATTTGCATGAGAATGGCGGGGCGACGAAGGGAGACCTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

298

Amino Acids

33.63

Weight (kDa)

5.4

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12811 FvH4_1g24841 FvH4_2g03460 FvH4_2g30311 FvH4_3g16731 FvH4_3g16931 FvH4_3g21841 FvH4_3g31692 FvH4_3g35772 FvH4_3g37482 FvH4_4g03991 FvH4_4g08241 FvH4_4g09290 FvH4_4g14651 FvH4_4g18201 FvH4_5g17842 FvH4_5g18993 FvH4_6g19711 FvH4_6g36421 FvH4_6g45941 FvH4_6g45942 FvH4_7g03942 FvH4_7g10731 FvH4_7g33141
prunus_persica	Prupe.1G185200_v2.0.a1
pyrus_communis	pycom01g05340 pycom05g05480 pycom14g05470
rosa_chinensis	RchiOBHm_Chr2g0143791 RchiOBHm_Chr2g0164531 RchiOBHm_Chr2g0174931 RchiOBHm_Chr3g0456701 RchiOBHm_Chr3g0462591 RchiOBHm_Chr3g0488601 RchiOBHm_Chr3g0489031 RchiOBHm_Chr4g0421211 RchiOBHm_Chr4g0421221 RchiOBHm_Chr6g0278461 RchiOBHm_Chr7g0183661 RchiOBHm_Chr7g0219131
rosa_multiflora	Rmu_co8327135.1_g000001 Rmu_co8385793.1_g000001 Rmu_co8398081.1_g000001 Rmu_sc0000721.1_g000029 Rmu_sc0000898.1_g000075 Rmu_sc0001156.1_g000001 Rmu_sc0003339.1_g000002 Rmu_sc0003505.1_g000007 Rmu_sc0003673.1_g000008 Rmu_sc0005071.1_g000010 Rmu_sc0005087.1_g000005 Rmu_sc0005350.1_g000007 Rmu_ssc0000118.1_g000016 Rmu_ssc0000162.1_g000012
rosa_roxburghii	Rroxscaffold_2G00123320 Rroxscaffold_3G00238750 Rroxscaffold_4G00300220 Rroxscaffold_5G00382590 Rroxscaffold_7G00206960
rosa_samantha	Rh1CG187800 Rh2BG032400 Rh4DG325100 Rh5CG260800 Rh6AG171500 Rh6AG472000
rosa_wichuraiana	Rw1G003490 Rw1G007660 Rw2G031060 Rw3G014070 Rw3G014230 Rw6G006100 Rw6G019680 Rw7G016530 Rw7G032660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	506
AccB1I	GGYRCC	1 cut(s)	671
AccI	GTMKAC	1 cut(s)	612
AciI	CCGC	3 cut(s)	180, 696, 867
AclWI	GGATC	3 cut(s)	132, 171, 589
AcoI	YGGCCR	1 cut(s)	820
AcsI	RAATTY	1 cut(s)	437
AcuI	CTGAAG	2 cut(s)	417, 473
AfaI	GTAC	1 cut(s)	547
AfiI	CCNNNNNNNGG	2 cut(s)	656, 716
AgeI	ACCGGT	2 cut(s)	426, 674
AluBI	AGCT	3 cut(s)	169, 175, 457
AluI	AGCT	3 cut(s)	169, 175, 457
Alw26I	GTCTC	5 cut(s)	55, 629, 654, 699, 876
AlwI	GGATC	3 cut(s)	132, 171, 589
AlwNI	CAGNNNCTG	1 cut(s)	395
AoxI	GGCC	2 cut(s)	408, 820
ApeKI	GCWGC	1 cut(s)	527
ApoI	RAATTY	1 cut(s)	437
AsiGI	ACCGGT	2 cut(s)	426, 674
Asp700I	GAANNNNTTC	2 cut(s)	207, 587
AspS9I	GGNCC	3 cut(s)	429, 508, 759
AsuC2I	CCSGG	2 cut(s)	70, 763
AsuHPI	GGTGA	5 cut(s)	34, 416, 677, 682, 740
AvaII	GGWCC	3 cut(s)	429, 508, 759
BalI	TGGCCA	1 cut(s)	822
BanI	GGYRCC	1 cut(s)	671
BbsI	GAAGAC	2 cut(s)	210, 488
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	4 cut(s)	93, 138, 662, 719
BceAI	ACGGC	1 cut(s)	142
BciVI	GTATCC	1 cut(s)	410
BclI	TGATCA	1 cut(s)	517
BcnI	CCSGG	2 cut(s)	70, 763
BcoDI	GTCTC	5 cut(s)	55, 629, 654, 699, 876
BfaI	CTAG	2 cut(s)	170, 404
BfuI	GTATCC	1 cut(s)	410
BglI	GCCNNNNNGGC	1 cut(s)	536
BglII	AGATCT	1 cut(s)	400
BisI	GCNGC	1 cut(s)	528
BlsI	GCNGC	1 cut(s)	529
Bme1390I	CCNGG	2 cut(s)	70, 763
Bme18I	GGWCC	3 cut(s)	429, 508, 759
BmgT120I	GGNCC	3 cut(s)	429, 508, 759
BmiI	GGNNCC	3 cut(s)	196, 673, 760
BmrFI	CCNGG	2 cut(s)	70, 763
BmrI	ACTGGG	2 cut(s)	149, 544
BmsI	GCATC	1 cut(s)	696
BmuI	ACTGGG	2 cut(s)	149, 544
BpiI	GAAGAC	2 cut(s)	210, 488
BpuEI	CTTGAG	1 cut(s)	471
BpuMI	CCSGG	2 cut(s)	70, 763
BsaI	GGTCTC	3 cut(s)	629, 699, 876
BsaJI	CCNNGG	4 cut(s)	69, 265, 639, 762
BsaWI	WCCGGW	2 cut(s)	426, 674
Bsc4I	CCNNNNNNNGG	2 cut(s)	656, 716
Bse118I	RCCGGY	2 cut(s)	426, 674
Bse1I	ACTGG	4 cut(s)	144, 539, 553, 606
BseDI	CCNNGG	4 cut(s)	69, 265, 639, 762
BseGI	GGATG	3 cut(s)	79, 149, 276
BseLI	CCNNNNNNNGG	2 cut(s)	656, 716
BseMII	CTCAG	1 cut(s)	624
BseNI	ACTGG	4 cut(s)	144, 539, 553, 606
BseRI	GAGGAG	1 cut(s)	717
BseXI	GCAGC	1 cut(s)	514
BshFI	GGCC	2 cut(s)	410, 822
BshNI	GGYRCC	1 cut(s)	671
BshTI	ACCGGT	2 cut(s)	426, 674
BsiSI	CCGG	4 cut(s)	69, 427, 675, 762
BslFI	GGGAC	1 cut(s)	772
BslI	CCNNNNNNNGG	2 cut(s)	656, 716
BsmAI	GTCTC	5 cut(s)	55, 629, 654, 699, 876
BsmBI	CGTCTC	1 cut(s)	654
BsmFI	GGGAC	1 cut(s)	772
BsnI	GGCC	2 cut(s)	410, 822
Bso31I	GGTCTC	3 cut(s)	629, 699, 876
Bsp143I	GATC	5 cut(s)	124, 163, 400, 517, 594
BspACI	CCGC	3 cut(s)	180, 696, 867
BspANI	GGCC	2 cut(s)	410, 822
BspCNI	CTCAG	1 cut(s)	625
BspLI	GGNNCC	3 cut(s)	196, 673, 760
BspPI	GGATC	3 cut(s)	132, 171, 589
BspT107I	GGYRCC	1 cut(s)	671
BspTNI	GGTCTC	3 cut(s)	629, 699, 876
BsrFI	RCCGGY	2 cut(s)	426, 674
BsrI	ACTGG	4 cut(s)	144, 539, 553, 606
BssAI	RCCGGY	2 cut(s)	426, 674
BssECI	CCNNGG	4 cut(s)	69, 265, 639, 762
BssMI	GATC	5 cut(s)	124, 163, 400, 517, 594
Bst4CI	ACNGT	3 cut(s)	119, 325, 665
Bst6I	CTCTTC	1 cut(s)	18
BstDEI	CTNAG	1 cut(s)	633
BstDSI	CCRYGG	1 cut(s)	265
BstF5I	GGATG	3 cut(s)	79, 149, 276
BstKTI	GATC	5 cut(s)	127, 166, 403, 520, 597
BstMAI	GTCTC	5 cut(s)	55, 629, 654, 699, 876
BstMBI	GATC	5 cut(s)	124, 163, 400, 517, 594
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 536
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	2 cut(s)	68, 761
BstV1I	GCAGC	1 cut(s)	514
BstV2I	GAAGAC	2 cut(s)	210, 488
BstX2I	RGATCY	2 cut(s)	400, 594
BstYI	RGATCY	2 cut(s)	400, 594
BsuI	GTATCC	1 cut(s)	410
BsuRI	GGCC	2 cut(s)	410, 822
BtgI	CCRYGG	1 cut(s)	265
BtsCI	GGATG	3 cut(s)	79, 149, 276
BtsIMutI	CAGTG	1 cut(s)	613
CaiI	CAGNNNCTG	1 cut(s)	395
Cfr10I	RCCGGY	2 cut(s)	426, 674
Cfr13I	GGNCC	3 cut(s)	429, 508, 759
Csp6I	GTAC	1 cut(s)	546
CspAI	ACCGGT	2 cut(s)	426, 674
CviAII	CATG	6 cut(s)	88, 248, 739, 749, 824, 857
CviQI	GTAC	1 cut(s)	546
DdeI	CTNAG	1 cut(s)	633
DpnI	GATC	5 cut(s)	126, 165, 402, 519, 596
DpnII	GATC	5 cut(s)	124, 163, 400, 517, 594
DrdI	GACNNNNNNGTC	1 cut(s)	506
DseDI	GACNNNNNNGTC	1 cut(s)	506
EaeI	YGGCCR	1 cut(s)	820
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
EciI	GGCGGA	1 cut(s)	685
Eco31I	GGTCTC	3 cut(s)	629, 699, 876
Eco47I	GGWCC	3 cut(s)	429, 508, 759
Eco57I	CTGAAG	2 cut(s)	417, 473
Esp3I	CGTCTC	1 cut(s)	654
FaeI	CATG	6 cut(s)	91, 251, 742, 752, 827, 860
FaiI	YATR	7 cut(s)	89, 249, 435, 740, 750, 825, 858
FalI	AAGNNNNNCTT	2 cut(s)	762, 794
FaqI	GGGAC	1 cut(s)	772
FatI	CATG	6 cut(s)	87, 247, 738, 748, 823, 856
FauI	CCCGC	2 cut(s)	187, 860
FbaI	TGATCA	1 cut(s)	517
FblI	GTMKAC	1 cut(s)	612
Fnu4HI	GCNGC	1 cut(s)	528
FokI	GGATG	3 cut(s)	86, 156, 263
Fsp4HI	GCNGC	1 cut(s)	528
FspBI	CTAG	2 cut(s)	170, 404
GluI	GCNGC	1 cut(s)	528
HaeIII	GGCC	2 cut(s)	410, 822
HapII	CCGG	4 cut(s)	69, 427, 675, 762
Hin1II	CATG	6 cut(s)	91, 251, 742, 752, 827, 860
HinfI	GANTC	5 cut(s)	63, 77, 353, 484, 583
HpaII	CCGG	4 cut(s)	69, 427, 675, 762
HphI	GGTGA	5 cut(s)	34, 416, 677, 682, 740
Hpy166II	GTNNAC	1 cut(s)	613
Hpy188I	TCNGA	3 cut(s)	634, 835, 893
Hpy188III	TCNNGA	4 cut(s)	239, 478, 488, 592
Hpy8I	GTNNAC	1 cut(s)	613
Hpy99I	CGWCG	2 cut(s)	447, 877
HpyAV	CCTTC	9 cut(s)	197, 218, 235, 254, 290, 308, 749, 755, 871
HpyCH4III	ACNGT	3 cut(s)	119, 325, 665
HpyCH4IV	ACGT	2 cut(s)	445, 544
HpyCH4V	TGCA	4 cut(s)	473, 557, 572, 856
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 536
HpyF3I	CTNAG	1 cut(s)	633
HpySE526I	ACGT	2 cut(s)	445, 544
Hsp92II	CATG	6 cut(s)	91, 251, 742, 752, 827, 860
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	5 cut(s)	124, 163, 400, 517, 594
LmnI	GCTCC	2 cut(s)	200, 747
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	1 cut(s)	696
MaeI	CTAG	2 cut(s)	170, 404
MaeII	ACGT	2 cut(s)	445, 544
MalI	GATC	5 cut(s)	126, 165, 402, 519, 596
MboI	GATC	5 cut(s)	124, 163, 400, 517, 594
MboII	GAAGA	6 cut(s)	35, 215, 322, 410, 493, 734
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	2 cut(s)	400, 594
MlsI	TGGCCA	1 cut(s)	822
MluCI	AATT	4 cut(s)	437, 552, 714, 792
MluNI	TGGCCA	1 cut(s)	822
MlyI	GAGTC	2 cut(s)	57, 478
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	5 cut(s)	386, 521, 634, 695, 703
Mox20I	TGGCCA	1 cut(s)	822
MroXI	GAANNNNTTC	2 cut(s)	207, 587
MscI	TGGCCA	1 cut(s)	822
MseI	TTAA	1 cut(s)	780
MslI	CAYNNNNRTG	1 cut(s)	861
Msp20I	TGGCCA	1 cut(s)	822
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	4 cut(s)	69, 427, 675, 762
MspR9I	CCNGG	2 cut(s)	70, 763
MunI	CAATTG	1 cut(s)	714
MwoI	GCNNNNNNNGC	2 cut(s)	154, 536
NciI	CCSGG	2 cut(s)	70, 763
NdeII	GATC	5 cut(s)	124, 163, 400, 517, 594
NlaIII	CATG	6 cut(s)	91, 251, 742, 752, 827, 860
NlaIV	GGNNCC	3 cut(s)	196, 673, 760
NspI	RCATGY	1 cut(s)	742
PdmI	GAANNNNTTC	2 cut(s)	207, 587
PfeI	GAWTC	3 cut(s)	77, 353, 583
PinAI	ACCGGT	2 cut(s)	426, 674
PkrI	GCNGC	1 cut(s)	529
PleI	GAGTC	2 cut(s)	57, 478
PpsI	GAGTC	2 cut(s)	57, 478
PspN4I	GGNNCC	3 cut(s)	196, 673, 760
PspPI	GGNCC	3 cut(s)	429, 508, 759
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	2 cut(s)	400, 594
RsaI	GTAC	1 cut(s)	547
RsaNI	GTAC	1 cut(s)	546
RseI	CAYNNNNRTG	1 cut(s)	861
SaqAI	TTAA	1 cut(s)	780
SatI	GCNGC	1 cut(s)	528
Sau3AI	GATC	5 cut(s)	124, 163, 400, 517, 594
Sau96I	GGNCC	3 cut(s)	429, 508, 759
SchI	GAGTC	2 cut(s)	57, 478
ScrFI	CCNGG	2 cut(s)	70, 763
SfaNI	GCATC	1 cut(s)	696
SinI	GGWCC	3 cut(s)	429, 508, 759
SmiMI	CAYNNNNRTG	1 cut(s)	861
SmlI	CTYRAG	1 cut(s)	486
SmoI	CTYRAG	1 cut(s)	486
Sse9I	AATT	4 cut(s)	437, 552, 714, 792
SsiI	CCGC	3 cut(s)	180, 696, 867
SspMI	CTAG	2 cut(s)	170, 404
StyD4I	CCNGG	2 cut(s)	68, 761
TaaI	ACNGT	3 cut(s)	119, 325, 665
TaiI	ACGT	2 cut(s)	448, 547
TaqI	TCGA	1 cut(s)	442
TaqII	GACCGA	1 cut(s)	653
TasI	AATT	4 cut(s)	437, 552, 714, 792
TfiI	GAWTC	3 cut(s)	77, 353, 583
Tru1I	TTAA	1 cut(s)	780
Tru9I	TTAA	1 cut(s)	780
TscAI	CASTG	1 cut(s)	613
TseI	GCWGC	1 cut(s)	527
TspDTI	ATGAA	6 cut(s)	90, 236, 345, 450, 737, 840
TspGWI	ACGGA	2 cut(s)	254, 429
TspRI	CASTG	1 cut(s)	613
VpaK11BI	GGWCC	3 cut(s)	429, 508, 759
XapI	RAATTY	1 cut(s)	437
XceI	RCATGY	1 cut(s)	742
XmiI	GTMKAC	1 cut(s)	612
XmnI	GAANNNNTTC	2 cut(s)	207, 587
XspI	CTAG	2 cut(s)	170, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.