transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 36 - 224 | 2.1e-23 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 724 - 798 | 1.2e-21 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 829 - 900 | 5.7e-16 | GAG-pre-integrase domain |
| rve | PF00665 | 914 - 1018 | 1.8e-12 | Integrase core domain |
| SH3_retrovirus | PF25597 | 1092 - 1146 | 1.1e-14 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 1279 - 1521 | 2.3e-70 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 264 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1821 |
| Acc36I | ACCTGC | 3 cut(s) | 1372, 2306, 2681 |
| AccI | GTMKAC | 5 cut(s) | 1001, 3381, 3646, 4241, 4663 |
| AccII | CGCG | 1 cut(s) | 3643 |
| AciI | CCGC | 4 cut(s) | 47, 250, 499, 2184 |
| AclI | AACGTT | 1 cut(s) | 132 |
| AcuI | CTGAAG | 6 cut(s) | 252, 341, 777, 1196, 4490, 4971 |
| AdeI | CACNNNGTG | 1 cut(s) | 3168 |
| AfaI | GTAC | 9 cut(s) | 971, 1154, 2174, 2499, 3205, 3886, 4178, 4567, 4984 |
| AflII | CTTAAG | 1 cut(s) | 1213 |
| AflIII | ACRYGT | 5 cut(s) | 2069, 2110, 2528, 3641, 4315 |
| AjnI | CCWGG | 5 cut(s) | 1934, 3199, 3660, 4223, 4907 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2801, 2833 |
| AleI | CACNNNNGTG | 1 cut(s) | 1742 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 4443, 4475 |
| Alw21I | GWGCWC | 3 cut(s) | 528, 3449, 4699 |
| Alw26I | GTCTC | 5 cut(s) | 1332, 3190, 3748, 4299, 4765 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 4769 |
| AoxI | GGCC | 2 cut(s) | 3147, 4191 |
| ApaI | GGGCCC | 1 cut(s) | 4195 |
| ApeKI | GCWGC | 4 cut(s) | 501, 947, 3653, 4967 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 4443, 4475 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2355, 3006 |
| AspA2I | CCTAGG | 4 cut(s) | 215, 1754, 1826, 3857 |
| AspLEI | GCGC | 1 cut(s) | 5255 |
| AspS9I | GGNCC | 6 cut(s) | 2006, 2767, 2777, 3147, 4191, 4192 |
| AsuHPI | GGTGA | 7 cut(s) | 74, 1052, 1577, 1619, 2174, 2219, 5203 |
| AvaII | GGWCC | 3 cut(s) | 2006, 2767, 2777 |
| AvrII | CCTAGG | 4 cut(s) | 215, 1754, 1826, 3857 |
| AxyI | CCTNAGG | 1 cut(s) | 3481 |
| BaeGI | GKGCMC | 1 cut(s) | 4195 |
| BanII | GRGCYC | 2 cut(s) | 556, 4195 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3243, 3275 |
| BauI | CACGAG | 1 cut(s) | 2703 |
| BbsI | GAAGAC | 2 cut(s) | 72, 4478 |
| Bbv12I | GWGCWC | 3 cut(s) | 528, 3449, 4699 |
| BbvI | GCAGC | 4 cut(s) | 513, 934, 3640, 4954 |
| BccI | CCATC | 7 cut(s) | 53, 596, 1031, 1510, 1657, 2264, 2672 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4994, 5028 |
| BciT130I | CCWGG | 5 cut(s) | 1936, 3201, 3662, 4225, 4909 |
| BciVI | GTATCC | 1 cut(s) | 5218 |
| BclI | TGATCA | 2 cut(s) | 4168, 4609 |
| BcoDI | GTCTC | 5 cut(s) | 1332, 3190, 3748, 4299, 4765 |
| BfmI | CTRYAG | 2 cut(s) | 1488, 4968 |
| BfrI | CTTAAG | 1 cut(s) | 1213 |
| BfuAI | ACCTGC | 3 cut(s) | 1372, 2306, 2681 |
| BfuI | GTATCC | 1 cut(s) | 5218 |
| BisI | GCNGC | 5 cut(s) | 499, 502, 948, 3654, 4968 |
| BlnI | CCTAGG | 4 cut(s) | 215, 1754, 1826, 3857 |
| BlpI | GCTNAGC | 1 cut(s) | 1905 |
| BlsI | GCNGC | 5 cut(s) | 500, 503, 949, 3655, 4969 |
| Bme1390I | CCNGG | 5 cut(s) | 1936, 3201, 3662, 4225, 4909 |
| Bme18I | GGWCC | 3 cut(s) | 2006, 2767, 2777 |
| BmgT120I | GGNCC | 6 cut(s) | 2006, 2767, 2777, 3147, 4191, 4192 |
| BmiI | GGNNCC | 6 cut(s) | 1657, 2008, 3620, 4193, 4215, 4360 |
| BmrFI | CCNGG | 5 cut(s) | 1936, 3201, 3662, 4225, 4909 |
| BmrI | ACTGGG | 1 cut(s) | 1345 |
| BmsI | GCATC | 7 cut(s) | 648, 2053, 3102, 3310, 3665, 4819, 5200 |
| BmuI | ACTGGG | 1 cut(s) | 1345 |
| BpiI | GAAGAC | 2 cut(s) | 72, 4478 |
| BpmI | CTGGAG | 2 cut(s) | 13, 4893 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2283 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1905 |
| BpuEI | CTTGAG | 9 cut(s) | 585, 650, 1314, 1448, 2176, 3214, 4125, 5016, 5047 |
| BsaAI | YACGTR | 1 cut(s) | 2501 |
| BsaBI | GATNNNNATC | 2 cut(s) | 587, 3471 |
| BsaI | GGTCTC | 1 cut(s) | 3190 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 11, 41, 1000, 1030, 3988, 4018, 4966, 4996 |
| Bse1I | ACTGG | 7 cut(s) | 30, 636, 1340, 2209, 2254, 3557, 5090 |
| Bse21I | CCTNAGG | 1 cut(s) | 3481 |
| Bse8I | GATNNNNATC | 2 cut(s) | 587, 3471 |
| BseBI | CCWGG | 5 cut(s) | 1936, 3201, 3662, 4225, 4909 |
| BseGI | GGATG | 8 cut(s) | 154, 631, 2410, 2743, 3526, 3656, 4087, 5004 |
| BseJI | GATNNNNATC | 2 cut(s) | 587, 3471 |
| BseNI | ACTGG | 7 cut(s) | 30, 636, 1340, 2209, 2254, 3557, 5090 |
| BseRI | GAGGAG | 1 cut(s) | 536 |
| BseSI | GKGCMC | 1 cut(s) | 4195 |
| BseXI | GCAGC | 4 cut(s) | 513, 934, 3640, 4954 |
| BseYI | CCCAGC | 1 cut(s) | 4817 |
| BsgI | GTGCAG | 2 cut(s) | 2127, 2543 |
| Bsh1236I | CGCG | 1 cut(s) | 3643 |
| BshFI | GGCC | 2 cut(s) | 3149, 4193 |
| BsiHKAI | GWGCWC | 3 cut(s) | 528, 3449, 4699 |
| BslFI | GGGAC | 3 cut(s) | 362, 1352, 1827 |
| BsmAI | GTCTC | 5 cut(s) | 1332, 3190, 3748, 4299, 4765 |
| BsmFI | GGGAC | 3 cut(s) | 362, 1352, 1827 |
| BsmI | GAATGC | 2 cut(s) | 2992, 3188 |
| BsnI | GGCC | 2 cut(s) | 3149, 4193 |
| Bso31I | GGTCTC | 1 cut(s) | 3190 |
| Bsp120I | GGGCCC | 1 cut(s) | 4191 |
| Bsp1286I | GDGCHC | 5 cut(s) | 528, 556, 3449, 4195, 4699 |
| Bsp1407I | TGTACA | 2 cut(s) | 1152, 4176 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1905 |
| Bsp19I | CCATGG | 2 cut(s) | 435, 1534 |
| BspACI | CCGC | 4 cut(s) | 47, 250, 499, 2184 |
| BspANI | GGCC | 2 cut(s) | 3149, 4193 |
| BspFNI | CGCG | 1 cut(s) | 3643 |
| BspHI | TCATGA | 1 cut(s) | 4320 |
| BspLI | GGNNCC | 6 cut(s) | 1657, 2008, 3620, 4193, 4215, 4360 |
| BspMAI | CTGCAG | 1 cut(s) | 4972 |
| BspMI | ACCTGC | 3 cut(s) | 1372, 2306, 2681 |
| BspQI | GCTCTTC | 1 cut(s) | 561 |
| BspTI | CTTAAG | 1 cut(s) | 1213 |
| BspTNI | GGTCTC | 1 cut(s) | 3190 |
| BsrGI | TGTACA | 2 cut(s) | 1152, 4176 |
| BsrI | ACTGG | 7 cut(s) | 30, 636, 1340, 2209, 2254, 3557, 5090 |
| BssNAI | GTATAC | 1 cut(s) | 3382 |
| BssSI | CACGAG | 1 cut(s) | 2703 |
| BssT1I | CCWWGG | 9 cut(s) | 162, 215, 435, 1534, 1754, 1826, 3857, 3958, 5220 |
| Bst1107I | GTATAC | 1 cut(s) | 3382 |
| Bst2BI | CACGAG | 1 cut(s) | 2703 |
| Bst2UI | CCWGG | 5 cut(s) | 1936, 3201, 3662, 4225, 4909 |
| Bst4CI | ACNGT | 8 cut(s) | 326, 1016, 1086, 2305, 3185, 3451, 4647, 4931 |
| Bst6I | CTCTTC | 5 cut(s) | 228, 561, 1038, 2867, 3100 |
| BstAFI | CTTAAG | 1 cut(s) | 1213 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 3168, 3185 |
| BstAUI | TGTACA | 2 cut(s) | 1152, 4176 |
| BstBAI | YACGTR | 1 cut(s) | 2501 |
| BstC8I | GCNNGC | 5 cut(s) | 47, 1902, 1950, 2471, 3169 |
| BstDSI | CCRYGG | 3 cut(s) | 435, 1534, 1962 |
| BstF5I | GGATG | 8 cut(s) | 154, 631, 2410, 2743, 3526, 3656, 4087, 5004 |
| BstFNI | CGCG | 1 cut(s) | 3643 |
| BstHHI | GCGC | 1 cut(s) | 5255 |
| BstMAI | GTCTC | 5 cut(s) | 1332, 3190, 3748, 4299, 4765 |
| BstNI | CCWGG | 5 cut(s) | 1936, 3201, 3662, 4225, 4909 |
| BstNSI | RCATGY | 6 cut(s) | 1892, 2114, 2532, 2591, 4319, 4426 |
| BstSCI | CCNGG | 5 cut(s) | 1934, 3199, 3660, 4223, 4907 |
| BstSFI | CTRYAG | 2 cut(s) | 1488, 4968 |
| BstSLI | GKGCMC | 1 cut(s) | 4195 |
| BstUI | CGCG | 1 cut(s) | 3643 |
| BstV1I | GCAGC | 4 cut(s) | 513, 934, 3640, 4954 |
| BstV2I | GAAGAC | 2 cut(s) | 72, 4478 |
| BstX2I | RGATCY | 3 cut(s) | 1966, 4153, 4588 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 1516, 3144, 4224, 5221 |
| BstYI | RGATCY | 3 cut(s) | 1966, 4153, 4588 |
| BstZ17I | GTATAC | 1 cut(s) | 3382 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3481 |
| BsuI | GTATCC | 1 cut(s) | 5218 |
| BsuRI | GGCC | 2 cut(s) | 3149, 4193 |
| BtgI | CCRYGG | 3 cut(s) | 435, 1534, 1962 |
| BtsCI | GGATG | 8 cut(s) | 154, 631, 2410, 2743, 3526, 3656, 4087, 5004 |
| BtsI | GCAGTG | 3 cut(s) | 3162, 4653, 4767 |
| BtsIMutI | CAGTG | 8 cut(s) | 322, 1021, 3162, 3447, 3871, 4653, 4767, 5097 |
| BveI | ACCTGC | 3 cut(s) | 1372, 2306, 2681 |
| Cac8I | GCNNGC | 5 cut(s) | 47, 1902, 1950, 2471, 3169 |
| CaiI | CAGNNNCTG | 1 cut(s) | 4769 |
| CciI | TCATGA | 1 cut(s) | 4320 |
| CfoI | GCGC | 1 cut(s) | 5255 |
| Cfr13I | GGNCC | 6 cut(s) | 2006, 2767, 2777, 3147, 4191, 4192 |
| CseI | GACGC | 2 cut(s) | 1736, 2567 |
| CsiI | ACCWGGT | 1 cut(s) | 3199 |
| Csp6I | GTAC | 9 cut(s) | 970, 1153, 2173, 2498, 3204, 3885, 4177, 4566, 4983 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 961, 996, 1944, 1979, 2110, 2145 |
| CviQI | GTAC | 9 cut(s) | 970, 1153, 2173, 2498, 3204, 3885, 4177, 4566, 4983 |
| DraI | TTTAAA | 2 cut(s) | 819, 1410 |
| DraIII | CACNNNGTG | 1 cut(s) | 3168 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1821 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1821 |
| Eam1104I | CTCTTC | 5 cut(s) | 228, 561, 1038, 2867, 3100 |
| EarI | CTCTTC | 5 cut(s) | 228, 561, 1038, 2867, 3100 |
| Eco130I | CCWWGG | 9 cut(s) | 162, 215, 435, 1534, 1754, 1826, 3857, 3958, 5220 |
| Eco24I | GRGCYC | 2 cut(s) | 556, 4195 |
| Eco31I | GGTCTC | 1 cut(s) | 3190 |
| Eco32I | GATATC | 2 cut(s) | 4348, 5129 |
| Eco47I | GGWCC | 3 cut(s) | 2006, 2767, 2777 |
| Eco57I | CTGAAG | 6 cut(s) | 252, 341, 777, 1196, 4490, 4971 |
| Eco81I | CCTNAGG | 1 cut(s) | 3481 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2006, 4191, 4192 |
| EcoRI | GAATTC | 5 cut(s) | 204, 2240, 3633, 3869, 4385 |
| EcoRII | CCWGG | 5 cut(s) | 1934, 3199, 3660, 4223, 4907 |
| EcoRV | GATATC | 2 cut(s) | 4348, 5129 |
| EcoT14I | CCWWGG | 9 cut(s) | 162, 215, 435, 1534, 1754, 1826, 3857, 3958, 5220 |
| EcoT22I | ATGCAT | 3 cut(s) | 2763, 2948, 3810 |
| EcoT38I | GRGCYC | 2 cut(s) | 556, 4195 |
| ErhI | CCWWGG | 9 cut(s) | 162, 215, 435, 1534, 1754, 1826, 3857, 3958, 5220 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 679, 711, 1457, 1489, 3933, 3965 |
| FaqI | GGGAC | 3 cut(s) | 362, 1352, 1827 |
| FauI | CCCGC | 1 cut(s) | 54 |
| FauNDI | CATATG | 1 cut(s) | 2763 |
| FbaI | TGATCA | 2 cut(s) | 4168, 4609 |
| FblI | GTMKAC | 5 cut(s) | 1001, 3381, 3646, 4241, 4663 |
| Fnu4HI | GCNGC | 5 cut(s) | 499, 502, 948, 3654, 4968 |
| FokI | GGATG | 8 cut(s) | 141, 638, 2417, 2730, 3533, 3643, 4094, 5011 |
| FriOI | GRGCYC | 2 cut(s) | 556, 4195 |
| Fsp4HI | GCNGC | 5 cut(s) | 499, 502, 948, 3654, 4968 |
| GlaI | GCGC | 1 cut(s) | 5254 |
| GluI | GCNGC | 5 cut(s) | 499, 502, 948, 3654, 4968 |
| GsaI | CCCAGC | 1 cut(s) | 4821 |
| GsuI | CTGGAG | 2 cut(s) | 13, 4893 |
| HaeIII | GGCC | 2 cut(s) | 3149, 4193 |
| HgaI | GACGC | 2 cut(s) | 1736, 2567 |
| HhaI | GCGC | 1 cut(s) | 5255 |
| Hin6I | GCGC | 1 cut(s) | 5253 |
| HinP1I | GCGC | 1 cut(s) | 5253 |
| HincII | GTYRAC | 2 cut(s) | 4466, 5043 |
| HindII | GTYRAC | 2 cut(s) | 4466, 5043 |
| HindIII | AAGCTT | 3 cut(s) | 342, 398, 2890 |
| HpaI | GTTAAC | 1 cut(s) | 5043 |
| HphI | GGTGA | 7 cut(s) | 74, 1052, 1577, 1619, 2174, 2219, 5203 |
| HpyCH4III | ACNGT | 8 cut(s) | 326, 1016, 1086, 2305, 3185, 3451, 4647, 4931 |
| HspAI | GCGC | 1 cut(s) | 5253 |
| Ksp22I | TGATCA | 2 cut(s) | 4168, 4609 |
| KspAI | GTTAAC | 1 cut(s) | 5043 |
| LguI | GCTCTTC | 1 cut(s) | 561 |
| Lsp1109I | GCAGC | 4 cut(s) | 513, 934, 3640, 4954 |
| LweI | GCATC | 7 cut(s) | 648, 2053, 3102, 3310, 3665, 4819, 5200 |
| MabI | ACCWGGT | 1 cut(s) | 3199 |
| MfeI | CAATTG | 6 cut(s) | 253, 1148, 3730, 4044, 4278, 5256 |
| MflI | RGATCY | 3 cut(s) | 1966, 4153, 4588 |
| MhlI | GDGCHC | 5 cut(s) | 528, 556, 3449, 4195, 4699 |
| MluI | ACGCGT | 1 cut(s) | 3641 |
| MlyI | GAGTC | 3 cut(s) | 657, 1106, 1577 |
| MmeI | TCCRAC | 4 cut(s) | 182, 2730, 2755, 5207 |
| Mph1103I | ATGCAT | 3 cut(s) | 2763, 2948, 3810 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2355, 3006 |
| MslI | CAYNNNNRTG | 7 cut(s) | 434, 1742, 1800, 2499, 3261, 3924, 5120 |
| MspA1I | CMGCKG | 2 cut(s) | 3125, 4949 |
| MspCI | CTTAAG | 1 cut(s) | 1213 |
| MspR9I | CCNGG | 5 cut(s) | 1936, 3201, 3662, 4225, 4909 |
| MunI | CAATTG | 6 cut(s) | 253, 1148, 3730, 4044, 4278, 5256 |
| Mva1269I | GAATGC | 2 cut(s) | 2992, 3188 |
| MvaI | CCWGG | 5 cut(s) | 1936, 3201, 3662, 4225, 4909 |
| MvnI | CGCG | 1 cut(s) | 3643 |
| NcoI | CCATGG | 2 cut(s) | 435, 1534 |
| NdeI | CATATG | 1 cut(s) | 2763 |
| NlaIV | GGNNCC | 6 cut(s) | 1657, 2008, 3620, 4193, 4215, 4360 |
| NmuCI | GTSAC | 9 cut(s) | 17, 245, 320, 1010, 1607, 1640, 1849, 2257, 4549 |
| NsiI | ATGCAT | 3 cut(s) | 2763, 2948, 3810 |
| NspI | RCATGY | 6 cut(s) | 1892, 2114, 2532, 2591, 4319, 4426 |
| OliI | CACNNNNGTG | 1 cut(s) | 1742 |
| PagI | TCATGA | 1 cut(s) | 4320 |
| PciI | ACATGT | 3 cut(s) | 2110, 2528, 4315 |
| PciSI | GCTCTTC | 1 cut(s) | 561 |
| PctI | GAATGC | 2 cut(s) | 2992, 3188 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2355, 3006 |
| PkrI | GCNGC | 5 cut(s) | 500, 503, 949, 3655, 4969 |
| PleI | GAGTC | 3 cut(s) | 657, 1106, 1576 |
| PpsI | GAGTC | 3 cut(s) | 657, 1106, 1576 |
| Ppu21I | YACGTR | 1 cut(s) | 2501 |
| PpuMI | RGGWCCY | 1 cut(s) | 2006 |
| PscI | ACATGT | 3 cut(s) | 2110, 2528, 4315 |
| PsiI | TTATAA | 1 cut(s) | 264 |
| Psp1406I | AACGTT | 1 cut(s) | 132 |
| Psp5II | RGGWCCY | 1 cut(s) | 2006 |
| Psp6I | CCWGG | 5 cut(s) | 1934, 3199, 3660, 4223, 4907 |
| PspFI | CCCAGC | 1 cut(s) | 4817 |
| PspGI | CCWGG | 5 cut(s) | 1934, 3199, 3660, 4223, 4907 |
| PspN4I | GGNNCC | 6 cut(s) | 1657, 2008, 3620, 4193, 4215, 4360 |
| PspOMI | GGGCCC | 1 cut(s) | 4191 |
| PspPI | GGNCC | 6 cut(s) | 2006, 2767, 2777, 3147, 4191, 4192 |
| PspPPI | RGGWCCY | 1 cut(s) | 2006 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2293, 2325 |
| PstI | CTGCAG | 1 cut(s) | 4972 |
| PstNI | CAGNNNCTG | 1 cut(s) | 4769 |
| PsuI | RGATCY | 3 cut(s) | 1966, 4153, 4588 |
| PvuII | CAGCTG | 2 cut(s) | 3125, 4949 |
| RsaI | GTAC | 9 cut(s) | 971, 1154, 2174, 2499, 3205, 3886, 4178, 4567, 4984 |
| RsaNI | GTAC | 9 cut(s) | 970, 1153, 2173, 2498, 3204, 3885, 4177, 4566, 4983 |
| RseI | CAYNNNNRTG | 7 cut(s) | 434, 1742, 1800, 2499, 3261, 3924, 5120 |
| SapI | GCTCTTC | 1 cut(s) | 561 |
| SatI | GCNGC | 5 cut(s) | 499, 502, 948, 3654, 4968 |
| Sau96I | GGNCC | 6 cut(s) | 2006, 2767, 2777, 3147, 4191, 4192 |
| SchI | GAGTC | 3 cut(s) | 657, 1106, 1577 |
| ScrFI | CCNGG | 5 cut(s) | 1936, 3201, 3662, 4225, 4909 |
| SduI | GDGCHC | 5 cut(s) | 528, 556, 3449, 4195, 4699 |
| SexAI | ACCWGGT | 1 cut(s) | 3199 |
| SfaNI | GCATC | 7 cut(s) | 648, 2053, 3102, 3310, 3665, 4819, 5200 |
| SfcI | CTRYAG | 2 cut(s) | 1488, 4968 |
| SinI | GGWCC | 3 cut(s) | 2006, 2767, 2777 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 434, 1742, 1800, 2499, 3261, 3924, 5120 |
| SsiI | CCGC | 4 cut(s) | 47, 250, 499, 2184 |
| SspI | AATATT | 3 cut(s) | 2458, 4807, 5077 |
| StyD4I | CCNGG | 5 cut(s) | 1934, 3199, 3660, 4223, 4907 |
| StyI | CCWWGG | 9 cut(s) | 162, 215, 435, 1534, 1754, 1826, 3857, 3958, 5220 |
| TaaI | ACNGT | 8 cut(s) | 326, 1016, 1086, 2305, 3185, 3451, 4647, 4931 |
| TaqI | TCGA | 6 cut(s) | 472, 591, 4270, 4858, 5014, 5140 |
| TatI | WGTACW | 4 cut(s) | 1152, 4176, 4565, 4982 |
| TauI | GCSGC | 1 cut(s) | 501 |
| TscAI | CASTG | 8 cut(s) | 329, 1021, 3169, 3454, 3871, 4660, 4774, 5097 |
| TseFI | GTSAC | 9 cut(s) | 17, 245, 320, 1010, 1607, 1640, 1849, 2257, 4549 |
| TseI | GCWGC | 4 cut(s) | 501, 947, 3653, 4967 |
| Tsp45I | GTSAC | 9 cut(s) | 17, 245, 320, 1010, 1607, 1640, 1849, 2257, 4549 |
| TspGWI | ACGGA | 3 cut(s) | 2736, 3207, 3533 |
| TspRI | CASTG | 8 cut(s) | 329, 1021, 3169, 3454, 3871, 4660, 4774, 5097 |
| Vha464I | CTTAAG | 1 cut(s) | 1213 |
| VpaK11BI | GGWCC | 3 cut(s) | 2006, 2767, 2777 |
| XceI | RCATGY | 6 cut(s) | 1892, 2114, 2532, 2591, 4319, 4426 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 2128, 3403, 3611 |
| XmaJI | CCTAGG | 4 cut(s) | 215, 1754, 1826, 3857 |
| XmiI | GTMKAC | 5 cut(s) | 1001, 3381, 3646, 4241, 4663 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2355, 3006 |
| Zsp2I | ATGCAT | 3 cut(s) | 2763, 2948, 3810 |