transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 36 - 110 | 6.4e-21 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 142 - 212 | 5.6e-16 | GAG-pre-integrase domain |
| rve | PF00665 | 227 - 330 | 8.4e-16 | Integrase core domain |
| SH3_retrovirus | PF25597 | 404 - 459 | 3.7e-13 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 597 - 839 | 3.7e-73 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 2101, 2762 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 541 |
| AccI | GTMKAC | 2 cut(s) | 671, 2617 |
| AciI | CCGC | 1 cut(s) | 1888 |
| AclWI | GGATC | 3 cut(s) | 711, 1554, 2102 |
| AcsI | RAATTY | 6 cut(s) | 262, 794, 914, 1250, 2339, 3128 |
| AcuI | CTGAAG | 3 cut(s) | 507, 1461, 2304 |
| AfaI | GTAC | 5 cut(s) | 749, 1416, 2603, 2744, 2915 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 541, 564, 651, 1968, 3124 |
| AflII | CTTAAG | 1 cut(s) | 2138 |
| AflIII | ACRYGT | 2 cut(s) | 31, 59 |
| AgeI | ACCGGT | 1 cut(s) | 602 |
| AhlI | ACTAGT | 2 cut(s) | 2522, 3017 |
| AjnI | CCWGG | 1 cut(s) | 250 |
| AleI | CACNNNNGTG | 1 cut(s) | 788 |
| Alw21I | GWGCWC | 3 cut(s) | 128, 1383, 1542 |
| Alw26I | GTCTC | 4 cut(s) | 2182, 2438, 2895, 3201 |
| Alw44I | GTGCAC | 1 cut(s) | 1538 |
| AlwI | GGATC | 3 cut(s) | 711, 1554, 2102 |
| Ama87I | CYCGRG | 1 cut(s) | 2824 |
| AoxI | GGCC | 1 cut(s) | 1456 |
| ApaLI | GTGCAC | 1 cut(s) | 1538 |
| ApeKI | GCWGC | 3 cut(s) | 1531, 2492, 2921 |
| ApoI | RAATTY | 6 cut(s) | 262, 794, 914, 1250, 2339, 3128 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2291, 2323 |
| AseI | ATTAAT | 2 cut(s) | 660, 1353 |
| AsiGI | ACCGGT | 1 cut(s) | 602 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1333, 1980, 2524, 3132 |
| AspS9I | GGNCC | 2 cut(s) | 411, 713 |
| AsuC2I | CCSGG | 1 cut(s) | 1137 |
| AsuHPI | GGTGA | 5 cut(s) | 155, 215, 556, 802, 1583 |
| AvaI | CYCGRG | 1 cut(s) | 2824 |
| AvaII | GGWCC | 2 cut(s) | 411, 713 |
| AxyI | CCTNAGG | 1 cut(s) | 2670 |
| BaeGI | GKGCMC | 1 cut(s) | 1542 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 85, 117 |
| BbsI | GAAGAC | 2 cut(s) | 1606, 1979 |
| Bbv12I | GWGCWC | 3 cut(s) | 128, 1383, 1542 |
| BbvI | GCAGC | 3 cut(s) | 1543, 2479, 2933 |
| BccI | CCATC | 6 cut(s) | 371, 1121, 1336, 1577, 2124, 2423 |
| BceAI | ACGGC | 1 cut(s) | 530 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2900, 2934 |
| BciT130I | CCWGG | 1 cut(s) | 252 |
| BciVI | GTATCC | 1 cut(s) | 266 |
| BclI | TGATCA | 3 cut(s) | 901, 1408, 2563 |
| BcnI | CCSGG | 1 cut(s) | 1137 |
| BcoDI | GTCTC | 4 cut(s) | 2182, 2438, 2895, 3201 |
| BcuI | ACTAGT | 2 cut(s) | 2522, 3017 |
| BfmI | CTRYAG | 2 cut(s) | 1225, 2094 |
| BfrI | CTTAAG | 1 cut(s) | 2138 |
| BfuAI | ACCTGC | 2 cut(s) | 2101, 2762 |
| BfuI | GTATCC | 1 cut(s) | 266 |
| BisI | GCNGC | 3 cut(s) | 1532, 2493, 2922 |
| BlsI | GCNGC | 3 cut(s) | 1533, 2494, 2923 |
| BmcAI | AGTACT | 1 cut(s) | 749 |
| Bme1390I | CCNGG | 2 cut(s) | 252, 1137 |
| Bme18I | GGWCC | 2 cut(s) | 411, 713 |
| BmeT110I | CYCGRG | 1 cut(s) | 2824 |
| BmgT120I | GGNCC | 2 cut(s) | 411, 713 |
| BmiI | GGNNCC | 2 cut(s) | 978, 1809 |
| BmrFI | CCNGG | 2 cut(s) | 252, 1137 |
| BmsI | GCATC | 7 cut(s) | 805, 1246, 1666, 1683, 2479, 2709, 3097 |
| BoxI | GACNNNNGTC | 1 cut(s) | 409 |
| BpiI | GAAGAC | 2 cut(s) | 1606, 1979 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 851, 883, 2005, 2037 |
| BpmI | CTGGAG | 1 cut(s) | 234 |
| Bpu10I | CCTNAGC | 1 cut(s) | 733 |
| BpuEI | CTTGAG | 6 cut(s) | 820, 1896, 1908, 2268, 2970, 3140 |
| BpuMI | CCSGG | 1 cut(s) | 1137 |
| BsaI | GGTCTC | 1 cut(s) | 2438 |
| BsaJI | CCNNGG | 2 cut(s) | 2514, 2823 |
| BsaWI | WCCGGW | 1 cut(s) | 602 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2416, 2446 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 541, 564, 651, 1968, 3124 |
| Bse118I | RCCGGY | 1 cut(s) | 602 |
| Bse1I | ACTGG | 3 cut(s) | 158, 1528, 2554 |
| Bse21I | CCTNAGG | 1 cut(s) | 2670 |
| Bse3DI | GCAATG | 5 cut(s) | 51, 1105, 1647, 1998, 2916 |
| BseBI | CCWGG | 1 cut(s) | 252 |
| BseDI | CCNNGG | 2 cut(s) | 2514, 2823 |
| BseGI | GGATG | 9 cut(s) | 161, 679, 2041, 2116, 2302, 2494, 2812, 2837, 2958 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 541, 564, 651, 1968, 3124 |
| BseMI | GCAATG | 5 cut(s) | 51, 1105, 1647, 1998, 2916 |
| BseMII | CTCAG | 3 cut(s) | 350, 473, 2799 |
| BseNI | ACTGG | 3 cut(s) | 158, 1528, 2554 |
| BseRI | GAGGAG | 2 cut(s) | 469, 978 |
| BseSI | GKGCMC | 1 cut(s) | 1542 |
| BseXI | GCAGC | 3 cut(s) | 1543, 2479, 2933 |
| BshFI | GGCC | 1 cut(s) | 1458 |
| BshTI | ACCGGT | 1 cut(s) | 602 |
| BsiHKAI | GWGCWC | 3 cut(s) | 128, 1383, 1542 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2824 |
| BsiSI | CCGG | 2 cut(s) | 603, 1136 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 541, 564, 651, 1968, 3124 |
| BsmAI | GTCTC | 4 cut(s) | 2182, 2438, 2895, 3201 |
| BsnI | GGCC | 1 cut(s) | 1458 |
| Bso31I | GGTCTC | 1 cut(s) | 2438 |
| BsoBI | CYCGRG | 1 cut(s) | 2824 |
| Bsp1286I | GDGCHC | 3 cut(s) | 128, 1383, 1542 |
| Bsp1407I | TGTACA | 1 cut(s) | 2742 |
| Bsp143I | GATC | 9 cut(s) | 418, 703, 901, 1408, 1546, 2107, 2563, 2809, 3097 |
| Bsp19I | CCATGG | 1 cut(s) | 2514 |
| BspACI | CCGC | 1 cut(s) | 1888 |
| BspANI | GGCC | 1 cut(s) | 1458 |
| BspCNI | CTCAG | 3 cut(s) | 351, 472, 2798 |
| BspHI | TCATGA | 1 cut(s) | 2352 |
| BspLI | GGNNCC | 2 cut(s) | 978, 1809 |
| BspMAI | CTGCAG | 1 cut(s) | 2098 |
| BspMI | ACCTGC | 2 cut(s) | 2101, 2762 |
| BspPI | GGATC | 3 cut(s) | 711, 1554, 2102 |
| BspQI | GCTCTTC | 1 cut(s) | 88 |
| BspTI | CTTAAG | 1 cut(s) | 2138 |
| BspTNI | GGTCTC | 1 cut(s) | 2438 |
| BsrDI | GCAATG | 5 cut(s) | 51, 1105, 1647, 1998, 2916 |
| BsrFI | RCCGGY | 1 cut(s) | 602 |
| BsrGI | TGTACA | 1 cut(s) | 2742 |
| BsrI | ACTGG | 3 cut(s) | 158, 1528, 2554 |
| BssAI | RCCGGY | 1 cut(s) | 602 |
| BssECI | CCNNGG | 2 cut(s) | 2514, 2823 |
| BssMI | GATC | 9 cut(s) | 418, 703, 901, 1408, 1546, 2107, 2563, 2809, 3097 |
| BssT1I | CCWWGG | 1 cut(s) | 2514 |
| Bst2UI | CCWGG | 1 cut(s) | 252 |
| Bst4CI | ACNGT | 2 cut(s) | 411, 2885 |
| Bst6I | CTCTTC | 6 cut(s) | 88, 333, 874, 1036, 1561, 1828 |
| BstAFI | CTTAAG | 1 cut(s) | 2138 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1104, 1537 |
| BstAUI | TGTACA | 1 cut(s) | 2742 |
| BstC8I | GCNNGC | 2 cut(s) | 623, 1105 |
| BstDSI | CCRYGG | 1 cut(s) | 2514 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 649 |
| BstF5I | GGATG | 9 cut(s) | 161, 679, 2041, 2116, 2302, 2494, 2812, 2837, 2958 |
| BstKTI | GATC | 9 cut(s) | 421, 706, 904, 1411, 1549, 2110, 2566, 2812, 3100 |
| BstMAI | GTCTC | 4 cut(s) | 2182, 2438, 2895, 3201 |
| BstMBI | GATC | 9 cut(s) | 418, 703, 901, 1408, 1546, 2107, 2563, 2809, 3097 |
| BstNI | CCWGG | 1 cut(s) | 252 |
| BstNSI | RCATGY | 2 cut(s) | 63, 2007 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 409 |
| BstSCI | CCNGG | 2 cut(s) | 250, 1135 |
| BstSFI | CTRYAG | 2 cut(s) | 1225, 2094 |
| BstSLI | GKGCMC | 1 cut(s) | 1542 |
| BstV1I | GCAGC | 3 cut(s) | 1543, 2479, 2933 |
| BstV2I | GAAGAC | 2 cut(s) | 1606, 1979 |
| BstX2I | RGATCY | 2 cut(s) | 703, 2107 |
| BstYI | RGATCY | 2 cut(s) | 703, 2107 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2670 |
| BsuI | GTATCC | 1 cut(s) | 266 |
| BsuRI | GGCC | 1 cut(s) | 1458 |
| BtgI | CCRYGG | 1 cut(s) | 2514 |
| BtsCI | GGATG | 9 cut(s) | 161, 679, 2041, 2116, 2302, 2494, 2812, 2837, 2958 |
| BtsIMutI | CAGTG | 2 cut(s) | 190, 3138 |
| BveI | ACCTGC | 2 cut(s) | 2101, 2762 |
| Cac8I | GCNNGC | 2 cut(s) | 623, 1105 |
| CciI | TCATGA | 1 cut(s) | 2352 |
| Cfr10I | RCCGGY | 1 cut(s) | 602 |
| Cfr13I | GGNCC | 2 cut(s) | 411, 713 |
| Csp6I | GTAC | 5 cut(s) | 748, 1415, 2602, 2743, 2914 |
| CspAI | ACCGGT | 1 cut(s) | 602 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 207, 242, 571, 606 |
| CviQI | GTAC | 5 cut(s) | 748, 1415, 2602, 2743, 2914 |
| DpnI | GATC | 9 cut(s) | 420, 705, 903, 1410, 1548, 2109, 2565, 2811, 3099 |
| DpnII | GATC | 9 cut(s) | 418, 703, 901, 1408, 1546, 2107, 2563, 2809, 3097 |
| DraI | TTTAAA | 3 cut(s) | 267, 1590, 2055 |
| Eam1104I | CTCTTC | 6 cut(s) | 88, 333, 874, 1036, 1561, 1828 |
| EarI | CTCTTC | 6 cut(s) | 88, 333, 874, 1036, 1561, 1828 |
| Eco130I | CCWWGG | 1 cut(s) | 2514 |
| Eco31I | GGTCTC | 1 cut(s) | 2438 |
| Eco32I | GATATC | 2 cut(s) | 2657, 3083 |
| Eco47I | GGWCC | 2 cut(s) | 411, 713 |
| Eco57I | CTGAAG | 3 cut(s) | 507, 1461, 2304 |
| Eco81I | CCTNAGG | 1 cut(s) | 2670 |
| Eco88I | CYCGRG | 1 cut(s) | 2824 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 649 |
| EcoRI | GAATTC | 2 cut(s) | 2339, 3128 |
| EcoRII | CCWGG | 1 cut(s) | 250 |
| EcoRV | GATATC | 2 cut(s) | 2657, 3083 |
| EcoT14I | CCWWGG | 1 cut(s) | 2514 |
| EcoT22I | ATGCAT | 2 cut(s) | 699, 884 |
| ErhI | CCWWGG | 1 cut(s) | 2514 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 288, 320, 734, 766, 1887, 1919 |
| FauI | CCCGC | 1 cut(s) | 1895 |
| FauNDI | CATATG | 1 cut(s) | 699 |
| FbaI | TGATCA | 3 cut(s) | 901, 1408, 2563 |
| FblI | GTMKAC | 2 cut(s) | 671, 2617 |
| Fnu4HI | GCNGC | 3 cut(s) | 1532, 2493, 2922 |
| FokI | GGATG | 9 cut(s) | 148, 666, 2048, 2103, 2309, 2501, 2819, 2844, 2965 |
| Fsp4HI | GCNGC | 3 cut(s) | 1532, 2493, 2922 |
| GluI | GCNGC | 3 cut(s) | 1532, 2493, 2922 |
| GsuI | CTGGAG | 1 cut(s) | 234 |
| HaeIII | GGCC | 1 cut(s) | 1458 |
| HapII | CCGG | 2 cut(s) | 603, 1136 |
| HindIII | AAGCTT | 4 cut(s) | 623, 730, 1473, 2593 |
| HpaII | CCGG | 2 cut(s) | 603, 1136 |
| HphI | GGTGA | 5 cut(s) | 155, 215, 556, 802, 1583 |
| Hpy188I | TCNGA | 8 cut(s) | 462, 814, 1561, 1867, 1881, 2323, 2507, 2788 |
| HpyAV | CCTTC | 7 cut(s) | 175, 281, 557, 1448, 1605, 1925, 3194 |
| HpyCH4III | ACNGT | 2 cut(s) | 411, 2885 |
| HpyCH4IV | ACGT | 1 cut(s) | 33 |
| HpySE526I | ACGT | 1 cut(s) | 33 |
| Ksp22I | TGATCA | 3 cut(s) | 901, 1408, 2563 |
| Kzo9I | GATC | 9 cut(s) | 418, 703, 901, 1408, 1546, 2107, 2563, 2809, 3097 |
| LguI | GCTCTTC | 1 cut(s) | 88 |
| LmnI | GCTCC | 2 cut(s) | 253, 982 |
| Lsp1109I | GCAGC | 3 cut(s) | 1543, 2479, 2933 |
| LweI | GCATC | 7 cut(s) | 805, 1246, 1666, 1683, 2479, 2709, 3097 |
| MaeII | ACGT | 1 cut(s) | 33 |
| MaeIII | GTNAC | 7 cut(s) | 193, 203, 241, 1217, 1265, 1286, 3008 |
| MalI | GATC | 9 cut(s) | 420, 705, 903, 1410, 1548, 2109, 2565, 2811, 3099 |
| MboI | GATC | 9 cut(s) | 418, 703, 901, 1408, 1546, 2107, 2563, 2809, 3097 |
| MfeI | CAATTG | 4 cut(s) | 320, 1374, 2232, 3149 |
| MflI | RGATCY | 2 cut(s) | 703, 2107 |
| MhlI | GDGCHC | 3 cut(s) | 128, 1383, 1542 |
| MlyI | GAGTC | 8 cut(s) | 41, 285, 325, 1131, 1364, 1783, 2777, 3203 |
| MmeI | TCCRAC | 3 cut(s) | 691, 2440, 3105 |
| Mph1103I | ATGCAT | 2 cut(s) | 699, 884 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1333, 1980, 2524, 3132 |
| MslI | CAYNNNNRTG | 2 cut(s) | 788, 2942 |
| MspA1I | CMGCKG | 1 cut(s) | 2924 |
| MspCI | CTTAAG | 1 cut(s) | 2138 |
| MspI | CCGG | 2 cut(s) | 603, 1136 |
| MspR9I | CCNGG | 2 cut(s) | 252, 1137 |
| MunI | CAATTG | 4 cut(s) | 320, 1374, 2232, 3149 |
| MvaI | CCWGG | 1 cut(s) | 252 |
| NciI | CCSGG | 1 cut(s) | 1137 |
| NcoI | CCATGG | 1 cut(s) | 2514 |
| NdeI | CATATG | 1 cut(s) | 699 |
| NdeII | GATC | 9 cut(s) | 418, 703, 901, 1408, 1546, 2107, 2563, 2809, 3097 |
| NlaIV | GGNNCC | 2 cut(s) | 978, 1809 |
| NmeAIII | GCCGAG | 2 cut(s) | 953, 2935 |
| NmuCI | GTSAC | 4 cut(s) | 193, 203, 1265, 3008 |
| NsiI | ATGCAT | 2 cut(s) | 699, 884 |
| NspI | RCATGY | 2 cut(s) | 63, 2007 |
| OliI | CACNNNNGTG | 1 cut(s) | 788 |
| PagI | TCATGA | 1 cut(s) | 2352 |
| PciI | ACATGT | 1 cut(s) | 59 |
| PciSI | GCTCTTC | 1 cut(s) | 88 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1333, 1980, 2524, 3132 |
| PfeI | GAWTC | 9 cut(s) | 348, 446, 1275, 1976, 2100, 2324, 2675, 2753, 3040 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 541 |
| PinAI | ACCGGT | 1 cut(s) | 602 |
| PkrI | GCNGC | 3 cut(s) | 1533, 2494, 2923 |
| PleI | GAGTC | 8 cut(s) | 41, 285, 324, 1130, 1364, 1782, 2777, 3202 |
| PpsI | GAGTC | 8 cut(s) | 41, 285, 324, 1130, 1364, 1782, 2777, 3202 |
| PscI | ACATGT | 1 cut(s) | 59 |
| PshAI | GACNNNNGTC | 1 cut(s) | 409 |
| PshBI | ATTAAT | 2 cut(s) | 660, 1353 |
| Psp6I | CCWGG | 1 cut(s) | 250 |
| PspGI | CCWGG | 1 cut(s) | 250 |
| PspN4I | GGNNCC | 2 cut(s) | 978, 1809 |
| PspPI | GGNCC | 2 cut(s) | 411, 713 |
| PstI | CTGCAG | 1 cut(s) | 2098 |
| PsuI | RGATCY | 2 cut(s) | 703, 2107 |
| PvuII | CAGCTG | 1 cut(s) | 2924 |
| RsaI | GTAC | 5 cut(s) | 749, 1416, 2603, 2744, 2915 |
| RsaNI | GTAC | 5 cut(s) | 748, 1415, 2602, 2743, 2914 |
| RseI | CAYNNNNRTG | 2 cut(s) | 788, 2942 |
| SapI | GCTCTTC | 1 cut(s) | 88 |
| SatI | GCNGC | 3 cut(s) | 1532, 2493, 2922 |
| Sau3AI | GATC | 9 cut(s) | 418, 703, 901, 1408, 1546, 2107, 2563, 2809, 3097 |
| Sau96I | GGNCC | 2 cut(s) | 411, 713 |
| SbfI | CCTGCAGG | 1 cut(s) | 2098 |
| ScaI | AGTACT | 1 cut(s) | 749 |
| SchI | GAGTC | 8 cut(s) | 41, 285, 325, 1131, 1364, 1783, 2777, 3203 |
| ScrFI | CCNGG | 2 cut(s) | 252, 1137 |
| SdaI | CCTGCAGG | 1 cut(s) | 2098 |
| SduI | GDGCHC | 3 cut(s) | 128, 1383, 1542 |
| SfaNI | GCATC | 7 cut(s) | 805, 1246, 1666, 1683, 2479, 2709, 3097 |
| SfcI | CTRYAG | 2 cut(s) | 1225, 2094 |
| SinI | GGWCC | 2 cut(s) | 411, 713 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 788, 2942 |
| SmlI | CTYRAG | 7 cut(s) | 799, 1911, 1923, 2138, 2283, 2985, 3119 |
| SmoI | CTYRAG | 7 cut(s) | 799, 1911, 1923, 2138, 2283, 2985, 3119 |
| SpeI | ACTAGT | 2 cut(s) | 2522, 3017 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 2098 |
| SsiI | CCGC | 1 cut(s) | 1888 |
| SspI | AATATT | 1 cut(s) | 2964 |
| StyD4I | CCNGG | 2 cut(s) | 250, 1135 |
| StyI | CCWWGG | 1 cut(s) | 2514 |
| TaaI | ACNGT | 2 cut(s) | 411, 2885 |
| TaiI | ACGT | 1 cut(s) | 36 |
| TaqI | TCGA | 6 cut(s) | 375, 482, 765, 1422, 2812, 3079 |
| TaqII | GACCGA | 1 cut(s) | 1831 |
| TatI | WGTACW | 3 cut(s) | 747, 2742, 2913 |
| TfiI | GAWTC | 9 cut(s) | 348, 446, 1275, 1976, 2100, 2324, 2675, 2753, 3040 |
| TscAI | CASTG | 2 cut(s) | 190, 3145 |
| TseFI | GTSAC | 4 cut(s) | 193, 203, 1265, 3008 |
| TseI | GCWGC | 3 cut(s) | 1531, 2492, 2921 |
| Tsp45I | GTSAC | 4 cut(s) | 193, 203, 1265, 3008 |
| TspGWI | ACGGA | 1 cut(s) | 222 |
| TspRI | CASTG | 2 cut(s) | 190, 3145 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 541 |
| Vha464I | CTTAAG | 1 cut(s) | 2138 |
| VneI | GTGCAC | 1 cut(s) | 1538 |
| VpaK11BI | GGWCC | 2 cut(s) | 411, 713 |
| VspI | ATTAAT | 2 cut(s) | 660, 1353 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 649 |
| XapI | RAATTY | 6 cut(s) | 262, 794, 914, 1250, 2339, 3128 |
| XbaI | TCTAGA | 1 cut(s) | 89 |
| XceI | RCATGY | 2 cut(s) | 63, 2007 |
| XmiI | GTMKAC | 2 cut(s) | 671, 2617 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1333, 1980, 2524, 3132 |
| ZrmI | AGTACT | 1 cut(s) | 749 |
| Zsp2I | ATGCAT | 2 cut(s) | 699, 884 |