FvH4_7g33141

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000703
Physical Location & Seq
Forward (+)
23655907 .. 23657697
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33141.t1

Sequence Viewer

Length: 552 bp
ATGCATAATGGTGGGTTCAAATTAGAGGCAAAAACCAAGGCCAAGGGAATAGAAACACAGCGCAGAGGCGCAAAAAACGCACCCCCAAGGCGCATAAGGCGCAAAAAACGCACCCTAAGGCGCATAAGGCAGACACAATCGACCACCACCAAGATTCCACCAGTTCGTGAATCGCGACCACCACAGACCATCCGACCATCGACCACCACCGACCATCTGACCACCACCAGGATTCCGATCATCCGACCAGTCGACCACCGCCTCGTCGCTGTCTTCTACAACTCAATCGCCTCAAACCTCTTCCTCCTAAGCCTCCATTGTAGTCACCAACTCACCTCTGATTTGAGGCAGCATTTACAGGAAGCTGTCTGTAAATGGTGTGTTGGTTTTGTCAATGGTGTGTTGGTTTTGTCTAAGTATAGATTGCTTTTGTCAATGTTTTCTCATCATCCTTACCAGAGACAAGAGAAGTTGATCAAGGAATCGGAGATAGCTGAAGCATTGATATCCATTTTTCTTCTCTGTTTCTCTTCGATTCCGTCTCTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

21.0

Weight (kDa)

10.95

Isoelectric Point (pI)

53.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 252
AccII CGCG 1 cut(s) 175
AciI CCGC 1 cut(s) 259
AcuI CTGAAG 1 cut(s) 516
AfiI CCNNNNNNNGG 1 cut(s) 228
AgsI TTSAA 1 cut(s) 19
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 2 cut(s) 365, 494
AluI AGCT 2 cut(s) 365, 494
Alw26I GTCTC 2 cut(s) 454, 546
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 349
AspLEI GCGC 5 cut(s) 63, 71, 93, 102, 123
AsuHPI GGTGA 2 cut(s) 317, 325
AxyI CCTNAGG 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 265
BbvI GCAGC 1 cut(s) 361
BccI CCATC 3 cut(s) 197, 205, 222
BciT130I CCWGG 1 cut(s) 229
BclI TGATCA 1 cut(s) 474
BcoDI GTCTC 2 cut(s) 454, 546
BisI GCNGC 1 cut(s) 350
BlsI GCNGC 1 cut(s) 351
Bme1390I CCNGG 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 265
Bpu10I CCTNAGC 1 cut(s) 308
BsaBI GATNNNNATC 1 cut(s) 236
BsaJI CCNNGG 3 cut(s) 36, 42, 86
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse1I ACTGG 2 cut(s) 161, 248
Bse21I CCTNAGG 1 cut(s) 116
Bse8I GATNNNNATC 1 cut(s) 236
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 3 cut(s) 36, 42, 86
BseGI GGATG 3 cut(s) 189, 240, 448
BseJI GATNNNNATC 1 cut(s) 236
BseLI CCNNNNNNNGG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 536
BseNI ACTGG 2 cut(s) 161, 248
BseXI GCAGC 1 cut(s) 361
Bsh1236I CGCG 1 cut(s) 175
BshFI GGCC 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 228
BsmAI GTCTC 2 cut(s) 454, 546
BsmBI CGTCTC 1 cut(s) 546
BsnI GGCC 1 cut(s) 41
Bsp143I GATC 2 cut(s) 237, 474
Bsp68I TCGCGA 1 cut(s) 175
BspACI CCGC 1 cut(s) 259
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 537
BspFNI CGCG 1 cut(s) 175
BsrI ACTGG 2 cut(s) 161, 248
BssECI CCNNGG 3 cut(s) 36, 42, 86
BssMI GATC 2 cut(s) 237, 474
BssT1I CCWWGG 3 cut(s) 36, 42, 86
Bst2UI CCWGG 1 cut(s) 229
Bst6I CTCTTC 2 cut(s) 305, 535
BstDEI CTNAG 4 cut(s) 116, 308, 414, 545
BstF5I GGATG 3 cut(s) 189, 240, 448
BstFNI CGCG 1 cut(s) 175
BstHHI GCGC 5 cut(s) 63, 71, 93, 102, 123
BstKTI GATC 2 cut(s) 240, 477
BstMAI GTCTC 2 cut(s) 454, 546
BstMBI GATC 2 cut(s) 237, 474
BstMWI GCNNNNNNNGC 5 cut(s) 77, 97, 99, 108, 127
BstNI CCWGG 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 227
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 361
BstV2I GAAGAC 1 cut(s) 265
Bsu36I CCTNAGG 1 cut(s) 116
BsuRI GGCC 1 cut(s) 41
BtsCI GGATG 3 cut(s) 189, 240, 448
BtuMI TCGCGA 1 cut(s) 175
CfoI GCGC 5 cut(s) 63, 71, 93, 102, 123
CviJI RGCY 4 cut(s) 41, 312, 365, 494
CviKI_1 RGCY 4 cut(s) 41, 312, 365, 494
DdeI CTNAG 4 cut(s) 116, 308, 414, 545
DpnI GATC 2 cut(s) 239, 476
DpnII GATC 2 cut(s) 237, 474
Eam1104I CTCTTC 2 cut(s) 305, 535
EarI CTCTTC 2 cut(s) 305, 535
Eco130I CCWWGG 3 cut(s) 36, 42, 86
Eco32I GATATC 1 cut(s) 507
Eco57I CTGAAG 1 cut(s) 516
Eco81I CCTNAGG 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 227
EcoRV GATATC 1 cut(s) 507
EcoT14I CCWWGG 3 cut(s) 36, 42, 86
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 3 cut(s) 36, 42, 86
Esp3I CGTCTC 1 cut(s) 546
FaiI YATR 4 cut(s) 6, 95, 125, 420
FbaI TGATCA 1 cut(s) 474
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 1 cut(s) 350
FokI GGATG 3 cut(s) 176, 227, 435
Fsp4HI GCNGC 1 cut(s) 350
GlaI GCGC 5 cut(s) 62, 70, 92, 101, 122
GluI GCNGC 1 cut(s) 350
HaeIII GGCC 1 cut(s) 41
HhaI GCGC 5 cut(s) 63, 71, 93, 102, 123
Hin6I GCGC 5 cut(s) 61, 69, 91, 100, 121
HinP1I GCGC 5 cut(s) 61, 69, 91, 100, 121
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 5 cut(s) 154, 170, 232, 482, 535
HphI GGTGA 2 cut(s) 317, 325
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 7 cut(s) 194, 219, 237, 245, 340, 487, 546
Hpy188III TCNNGA 2 cut(s) 167, 174
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 1 cut(s) 269
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 97, 99, 108, 127
HpyF3I CTNAG 4 cut(s) 116, 308, 414, 545
HspAI GCGC 5 cut(s) 61, 69, 91, 100, 121
Ksp22I TGATCA 1 cut(s) 474
Kzo9I GATC 2 cut(s) 237, 474
LpnPI CCDG 6 cut(s) 174, 214, 241, 261, 344, 470
Lsp1109I GCAGC 1 cut(s) 361
MaeIII GTNAC 1 cut(s) 323
MalI GATC 2 cut(s) 239, 476
MboI GATC 2 cut(s) 237, 474
MboII GAAGA 4 cut(s) 265, 292, 509, 522
MluCI AATT 1 cut(s) 20
MmeI TCCRAC 2 cut(s) 217, 268
MnlI CCTC 9 cut(s) 19, 59, 272, 301, 308, 314, 323, 339, 346
Mph1103I ATGCAT 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 229
MvaI CCWGG 1 cut(s) 229
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 5 cut(s) 77, 97, 99, 108, 127
NdeII GATC 2 cut(s) 237, 474
NmuCI GTSAC 1 cut(s) 323
NruI TCGCGA 1 cut(s) 175
NsiI ATGCAT 1 cut(s) 6
PcsI WCGNNNNNNNCGW 1 cut(s) 172
PfeI GAWTC 5 cut(s) 154, 170, 232, 482, 535
PkrI GCNGC 1 cut(s) 351
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
RruI TCGCGA 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 9
SalI GTCGAC 1 cut(s) 251
SatI GCNGC 1 cut(s) 350
Sau3AI GATC 2 cut(s) 237, 474
ScrFI CCNGG 1 cut(s) 229
SetI ASST 4 cut(s) 300, 338, 367, 496
SmiMI CAYNNNNRTG 1 cut(s) 9
Sse9I AATT 1 cut(s) 20
SsiI CCGC 1 cut(s) 259
StyD4I CCNGG 1 cut(s) 227
StyI CCWWGG 3 cut(s) 36, 42, 86
TaqI TCGA 4 cut(s) 140, 200, 252, 533
TasI AATT 1 cut(s) 20
TfiI GAWTC 5 cut(s) 154, 170, 232, 482, 535
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 1 cut(s) 349
Tsp45I GTSAC 1 cut(s) 323
TspGWI ACGGA 1 cut(s) 528
XmiI GTMKAC 1 cut(s) 252
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.