gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 305, 585 |
| AatII | GACGTC | 1 cut(s) | 443 |
| AclWI | GGATC | 1 cut(s) | 332 |
| AcsI | RAATTY | 3 cut(s) | 104, 286, 394 |
| AcuI | CTGAAG | 2 cut(s) | 404, 498 |
| AcyI | GRCGYC | 1 cut(s) | 440 |
| AfaI | GTAC | 2 cut(s) | 418, 722 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 717 |
| AgsI | TTSAA | 6 cut(s) | 68, 104, 374, 414, 656, 704 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 604 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 105, 137 |
| AluBI | AGCT | 3 cut(s) | 43, 147, 379 |
| AluI | AGCT | 3 cut(s) | 43, 147, 379 |
| Alw26I | GTCTC | 1 cut(s) | 459 |
| AlwI | GGATC | 1 cut(s) | 332 |
| AoxI | GGCC | 1 cut(s) | 276 |
| ApeKI | GCWGC | 1 cut(s) | 43 |
| ApoI | RAATTY | 3 cut(s) | 104, 286, 394 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 437, 469 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 409 |
| BbvI | GCAGC | 1 cut(s) | 30 |
| BccI | CCATC | 2 cut(s) | 443, 761 |
| BcoDI | GTCTC | 1 cut(s) | 459 |
| BglII | AGATCT | 1 cut(s) | 422 |
| BisI | GCNGC | 1 cut(s) | 44 |
| BlsI | GCNGC | 1 cut(s) | 45 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 604 |
| BmiI | GGNNCC | 1 cut(s) | 235 |
| BpuEI | CTTGAG | 1 cut(s) | 758 |
| BsaHI | GRCGYC | 1 cut(s) | 440 |
| BsaI | GGTCTC | 1 cut(s) | 459 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 409, 439, 586, 616 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 717 |
| BseGI | GGATG | 1 cut(s) | 697 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 717 |
| BseMII | CTCAG | 1 cut(s) | 609 |
| BseRI | GAGGAG | 3 cut(s) | 572, 641, 701 |
| BseXI | GCAGC | 1 cut(s) | 30 |
| BshFI | GGCC | 1 cut(s) | 278 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 717 |
| BsmAI | GTCTC | 1 cut(s) | 459 |
| BsmI | GAATGC | 1 cut(s) | 184 |
| BsnI | GGCC | 1 cut(s) | 278 |
| Bso31I | GGTCTC | 1 cut(s) | 459 |
| Bsp143I | GATC | 4 cut(s) | 223, 337, 422, 777 |
| BspANI | GGCC | 1 cut(s) | 278 |
| BspCNI | CTCAG | 1 cut(s) | 610 |
| BspHI | TCATGA | 1 cut(s) | 10 |
| BspLI | GGNNCC | 1 cut(s) | 235 |
| BspPI | GGATC | 1 cut(s) | 332 |
| BspTNI | GGTCTC | 1 cut(s) | 459 |
| BssMI | GATC | 4 cut(s) | 223, 337, 422, 777 |
| BssNI | GRCGYC | 1 cut(s) | 440 |
| Bst4CI | ACNGT | 2 cut(s) | 63, 602 |
| Bst6I | CTCTTC | 2 cut(s) | 183, 627 |
| BstACI | GRCGYC | 1 cut(s) | 440 |
| BstC8I | GCNNGC | 1 cut(s) | 145 |
| BstDEI | CTNAG | 2 cut(s) | 227, 618 |
| BstF5I | GGATG | 1 cut(s) | 697 |
| BstKTI | GATC | 4 cut(s) | 226, 340, 425, 780 |
| BstMAI | GTCTC | 1 cut(s) | 459 |
| BstMBI | GATC | 4 cut(s) | 223, 337, 422, 777 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 575, 647 |
| BstNSI | RCATGY | 1 cut(s) | 501 |
| BstV1I | GCAGC | 1 cut(s) | 30 |
| BstX2I | RGATCY | 1 cut(s) | 422 |
| BstYI | RGATCY | 1 cut(s) | 422 |
| BsuRI | GGCC | 1 cut(s) | 278 |
| BtsCI | GGATG | 1 cut(s) | 697 |
| BtsIMutI | CAGTG | 1 cut(s) | 607 |
| Cac8I | GCNNGC | 1 cut(s) | 145 |
| CciI | TCATGA | 1 cut(s) | 10 |
| CseI | GACGC | 1 cut(s) | 251 |
| Csp6I | GTAC | 2 cut(s) | 417, 721 |
| CviAII | CATG | 5 cut(s) | 11, 248, 498, 515, 571 |
| CviJI | RGCY | 8 cut(s) | 43, 147, 236, 278, 379, 521, 569, 578 |
| CviKI_1 | RGCY | 8 cut(s) | 43, 147, 236, 278, 379, 521, 569, 578 |
| CviQI | GTAC | 2 cut(s) | 417, 721 |
| DdeI | CTNAG | 2 cut(s) | 227, 618 |
| DpnI | GATC | 4 cut(s) | 225, 339, 424, 779 |
| DpnII | GATC | 4 cut(s) | 223, 337, 422, 777 |
| DriI | GACNNNNNGTC | 1 cut(s) | 604 |
| Eam1104I | CTCTTC | 2 cut(s) | 183, 627 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 604 |
| EarI | CTCTTC | 2 cut(s) | 183, 627 |
| Eco31I | GGTCTC | 1 cut(s) | 459 |
| Eco57I | CTGAAG | 2 cut(s) | 404, 498 |
| EcoRI | GAATTC | 1 cut(s) | 104 |
| EcoT22I | ATGCAT | 1 cut(s) | 499 |
| FaeI | CATG | 5 cut(s) | 14, 251, 501, 518, 574 |
| FatI | CATG | 5 cut(s) | 10, 247, 497, 514, 570 |
| FauNDI | CATATG | 1 cut(s) | 682 |
| Fnu4HI | GCNGC | 1 cut(s) | 44 |
| FokI | GGATG | 1 cut(s) | 704 |
| Fsp4HI | GCNGC | 1 cut(s) | 44 |
| GluI | GCNGC | 1 cut(s) | 44 |
| HaeIII | GGCC | 1 cut(s) | 278 |
| HgaI | GACGC | 1 cut(s) | 251 |
| Hin1I | GRCGYC | 1 cut(s) | 440 |
| Hin1II | CATG | 5 cut(s) | 14, 251, 501, 518, 574 |
| HindIII | AAGCTT | 1 cut(s) | 145 |
| HinfI | GANTC | 5 cut(s) | 251, 462, 605, 677, 771 |
| Hpy188I | TCNGA | 6 cut(s) | 32, 256, 342, 478, 610, 619 |
| Hpy188III | TCNNGA | 2 cut(s) | 11, 775 |
| HpyAV | CCTTC | 3 cut(s) | 268, 473, 477 |
| HpyCH4III | ACNGT | 2 cut(s) | 63, 602 |
| HpyCH4IV | ACGT | 1 cut(s) | 440 |
| HpyCH4V | TGCA | 6 cut(s) | 46, 143, 241, 497, 533, 787 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 575, 647 |
| HpyF3I | CTNAG | 2 cut(s) | 227, 618 |
| HpySE526I | ACGT | 1 cut(s) | 440 |
| Hsp92I | GRCGYC | 1 cut(s) | 440 |
| Hsp92II | CATG | 5 cut(s) | 14, 251, 501, 518, 574 |
| Kzo9I | GATC | 4 cut(s) | 223, 337, 422, 777 |
| LmnI | GCTCC | 1 cut(s) | 233 |
| LpnPI | CCDG | 4 cut(s) | 177, 279, 489, 724 |
| Lsp1109I | GCAGC | 1 cut(s) | 30 |
| MaeII | ACGT | 1 cut(s) | 440 |
| MaeIII | GTNAC | 1 cut(s) | 596 |
| MalI | GATC | 4 cut(s) | 225, 339, 424, 779 |
| MboI | GATC | 4 cut(s) | 223, 337, 422, 777 |
| MboII | GAAGA | 9 cut(s) | 101, 200, 323, 326, 397, 574, 644, 716, 766 |
| MflI | RGATCY | 1 cut(s) | 422 |
| MluCI | AATT | 6 cut(s) | 104, 117, 286, 394, 586, 728 |
| MlyI | GAGTC | 3 cut(s) | 260, 614, 765 |
| Mph1103I | ATGCAT | 1 cut(s) | 499 |
| MroXI | GAANNNNTTC | 1 cut(s) | 409 |
| MseI | TTAA | 3 cut(s) | 296, 356, 738 |
| Mva1269I | GAATGC | 1 cut(s) | 184 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 575, 647 |
| NdeI | CATATG | 1 cut(s) | 682 |
| NdeII | GATC | 4 cut(s) | 223, 337, 422, 777 |
| NlaIII | CATG | 5 cut(s) | 14, 251, 501, 518, 574 |
| NlaIV | GGNNCC | 1 cut(s) | 235 |
| NmuCI | GTSAC | 1 cut(s) | 596 |
| NsiI | ATGCAT | 1 cut(s) | 499 |
| NspI | RCATGY | 1 cut(s) | 501 |
| PagI | TCATGA | 1 cut(s) | 10 |
| PctI | GAATGC | 1 cut(s) | 184 |
| PdmI | GAANNNNTTC | 1 cut(s) | 409 |
| PfeI | GAWTC | 2 cut(s) | 462, 677 |
| PkrI | GCNGC | 1 cut(s) | 45 |
| PleI | GAGTC | 3 cut(s) | 259, 613, 765 |
| PpsI | GAGTC | 3 cut(s) | 259, 613, 765 |
| PsiI | TTATAA | 2 cut(s) | 305, 585 |
| PspN4I | GGNNCC | 1 cut(s) | 235 |
| PsuI | RGATCY | 1 cut(s) | 422 |
| RsaI | GTAC | 2 cut(s) | 418, 722 |
| RsaNI | GTAC | 2 cut(s) | 417, 721 |
| SaqAI | TTAA | 3 cut(s) | 296, 356, 738 |
| SatI | GCNGC | 1 cut(s) | 44 |
| Sau3AI | GATC | 4 cut(s) | 223, 337, 422, 777 |
| SchI | GAGTC | 3 cut(s) | 260, 614, 765 |
| SetI | ASST | 8 cut(s) | 30, 45, 97, 149, 381, 443, 624, 722 |
| SmlI | CTYRAG | 1 cut(s) | 773 |
| SmoI | CTYRAG | 1 cut(s) | 773 |
| Sse9I | AATT | 6 cut(s) | 104, 117, 286, 394, 586, 728 |
| TaaI | ACNGT | 2 cut(s) | 63, 602 |
| TaiI | ACGT | 1 cut(s) | 443 |
| TaqI | TCGA | 2 cut(s) | 38, 75 |
| TasI | AATT | 6 cut(s) | 104, 117, 286, 394, 586, 728 |
| TatI | WGTACW | 1 cut(s) | 416 |
| TfiI | GAWTC | 2 cut(s) | 462, 677 |
| Tru1I | TTAA | 3 cut(s) | 296, 356, 738 |
| Tru9I | TTAA | 3 cut(s) | 296, 356, 738 |
| TscAI | CASTG | 1 cut(s) | 607 |
| TseFI | GTSAC | 1 cut(s) | 596 |
| TseI | GCWGC | 1 cut(s) | 43 |
| Tsp45I | GTSAC | 1 cut(s) | 596 |
| TspDTI | ATGAA | 6 cut(s) | 126, 454, 525, 531, 587, 669 |
| TspRI | CASTG | 1 cut(s) | 607 |
| XapI | RAATTY | 3 cut(s) | 104, 286, 394 |
| XceI | RCATGY | 1 cut(s) | 501 |
| XmnI | GAANNNNTTC | 1 cut(s) | 409 |
| ZraI | GACGTC | 1 cut(s) | 441 |
| Zsp2I | ATGCAT | 1 cut(s) | 499 |