RchiOBHm_Chr6g0278461

spliceosomal complex assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000703
Physical Location & Seq
Reverse (-)
41573621 .. 41574249
629 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24978

Sequence Viewer

Length: 585 bp
ATGTGTGAGGGTTGCAAGCTTGGTAAGCAAACTCGTTCCTCACATAGGATCATTAATTCTATGTCTACTTCACAACCTTTGGATTTAATGCATATGGATCTGGTTGGACTTGTTCAAACCAAAAGCTTAGGTGGTAAGAAGTACATGCTTGTTCTAGTCGATGATTTTTCTAGGTTCACTTGGGTGAAATTCTTGTGTGAAAAATCTGATGCTTTTGACAACTTTCAAAACTTGTGCAAAATGATTTCAAATGAGCAATACTCTTCAAATAAATGCATTGTAAGACTTAGAACTAATCATGGAACTGAATTTGAAAATGCTTCATTTGATGAGTTTTGTAATGATATGGGAATTAAGCATGAGTTCTCGGCTCCCATAACTCCGCAACAAAATGGTGTTGTGGAAAGGAAAAACAGGGTTTTAATTGAAATGGGAAGAGTTATGCTAAACTCTGCTGGTCTTGCTCATACTTTTTGGGCAGAAGCGATTAGCAATGCTTGCTATACCATCAATAGGGTCATCTTTAGATCGGGAACTGAAAAAACTCCTTATGAGATTTTGAAAGGAAAGAAACCAAATGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 gag_pre-integrs rve zf-CCHC

Protein Analysis

194

Amino Acids

22.03

Weight (kDa)

8.83

Isoelectric Point (pI)

32.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
rve PF00665 24 - 128 3.4e-14 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 65
AciI CCGC 1 cut(s) 383
AclWI GGATC 2 cut(s) 56, 105
AcsI RAATTY 2 cut(s) 188, 308
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 2 cut(s) 45, 513
AgsI TTSAA 7 cut(s) 116, 227, 249, 267, 314, 428, 562
AleI CACNNNNGTG 1 cut(s) 182
AluBI AGCT 2 cut(s) 19, 126
AluI AGCT 2 cut(s) 19, 126
AlwI GGATC 2 cut(s) 56, 105
ApoI RAATTY 2 cut(s) 188, 308
AseI ATTAAT 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 196
BccI CCATC 1 cut(s) 515
BfaI CTAG 2 cut(s) 155, 171
BmiI GGNNCC 1 cut(s) 372
BmsI GCATC 1 cut(s) 199
BplI GAGNNNNNCTC 2 cut(s) 245, 277
Bpu10I CCTNAGC 1 cut(s) 127
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 513
Bse3DI GCAATG 1 cut(s) 499
BseLI CCNNNNNNNGG 2 cut(s) 45, 513
BseMI GCAATG 1 cut(s) 499
BslI CCNNNNNNNGG 2 cut(s) 45, 513
Bsp143I GATC 3 cut(s) 48, 97, 527
BspACI CCGC 1 cut(s) 383
BspLI GGNNCC 1 cut(s) 372
BspPI GGATC 2 cut(s) 56, 105
BsrDI GCAATG 1 cut(s) 499
BssMI GATC 3 cut(s) 48, 97, 527
Bst6I CTCTTC 2 cut(s) 268, 430
BstAPI GCANNNNNTGC 1 cut(s) 498
BstC8I GCNNGC 2 cut(s) 17, 499
BstDEI CTNAG 2 cut(s) 127, 287
BstENI CCTNNNNNAGG 1 cut(s) 43
BstKTI GATC 3 cut(s) 51, 100, 530
BstMBI GATC 3 cut(s) 48, 97, 527
BstMWI GCNNNNNNNGC 3 cut(s) 25, 461, 498
BstNSI RCATGY 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
Cac8I GCNNGC 2 cut(s) 17, 499
Csp6I GTAC 1 cut(s) 142
CviAII CATG 3 cut(s) 145, 299, 359
CviJI RGCY 3 cut(s) 19, 126, 371
CviKI_1 RGCY 3 cut(s) 19, 126, 371
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 2 cut(s) 127, 287
DpnI GATC 3 cut(s) 50, 99, 529
DpnII GATC 3 cut(s) 48, 97, 527
Eam1104I CTCTTC 2 cut(s) 268, 430
EarI CTCTTC 2 cut(s) 268, 430
EcoNI CCTNNNNNAGG 1 cut(s) 43
EcoT22I ATGCAT 2 cut(s) 93, 278
FaeI CATG 3 cut(s) 148, 302, 362
FatI CATG 3 cut(s) 144, 298, 358
FauNDI CATATG 1 cut(s) 93
FblI GTMKAC 1 cut(s) 65
FspBI CTAG 2 cut(s) 155, 171
Hin1II CATG 3 cut(s) 148, 302, 362
HindIII AAGCTT 2 cut(s) 17, 124
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 2 cut(s) 66, 177
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 1 cut(s) 531
Hpy8I GTNNAC 2 cut(s) 66, 177
HpyCH4V TGCA 4 cut(s) 15, 91, 237, 276
HpyF10VI GCNNNNNNNGC 3 cut(s) 25, 461, 498
HpyF3I CTNAG 2 cut(s) 127, 287
Hsp92II CATG 3 cut(s) 148, 302, 362
Kzo9I GATC 3 cut(s) 48, 97, 527
LmnI GCTCC 1 cut(s) 376
LpnPI CCDG 3 cut(s) 86, 400, 441
LweI GCATC 1 cut(s) 199
MaeI CTAG 2 cut(s) 155, 171
MalI GATC 3 cut(s) 50, 99, 529
MboI GATC 3 cut(s) 48, 97, 527
MboII GAAGA 2 cut(s) 255, 447
MflI RGATCY 1 cut(s) 97
MluCI AATT 5 cut(s) 55, 188, 308, 351, 423
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 1 cut(s) 49
Mph1103I ATGCAT 2 cut(s) 93, 278
MseI TTAA 4 cut(s) 54, 86, 354, 422
MslI CAYNNNNRTG 1 cut(s) 182
MwoI GCNNNNNNNGC 3 cut(s) 25, 461, 498
NdeI CATATG 1 cut(s) 93
NdeII GATC 3 cut(s) 48, 97, 527
NlaIII CATG 3 cut(s) 148, 302, 362
NlaIV GGNNCC 1 cut(s) 372
NmeAIII GCCGAG 1 cut(s) 347
NsiI ATGCAT 2 cut(s) 93, 278
NspI RCATGY 1 cut(s) 148
OliI CACNNNNGTG 1 cut(s) 182
PshBI ATTAAT 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 372
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 4 cut(s) 54, 86, 354, 422
Sau3AI GATC 3 cut(s) 48, 97, 527
SetI ASST 5 cut(s) 21, 79, 128, 133, 176
SfaNI GCATC 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 182
Sse9I AATT 5 cut(s) 55, 188, 308, 351, 423
SsiI CCGC 1 cut(s) 383
SspMI CTAG 2 cut(s) 155, 171
TaqI TCGA 1 cut(s) 159
TasI AATT 5 cut(s) 55, 188, 308, 351, 423
TatI WGTACW 1 cut(s) 141
Tru1I TTAA 4 cut(s) 54, 86, 354, 422
Tru9I TTAA 4 cut(s) 54, 86, 354, 422
TspDTI ATGAA 1 cut(s) 312
VspI ATTAAT 1 cut(s) 54
XagI CCTNNNNNAGG 1 cut(s) 43
XapI RAATTY 2 cut(s) 188, 308
XceI RCATGY 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 65
XspI CTAG 2 cut(s) 155, 171
Zsp2I ATGCAT 2 cut(s) 93, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.