Rmu_sc0003673.1_g000008

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003673.1
Physical Location & Seq
Reverse (-)
20045 .. 20401
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003673.1_g000008.1.cds

Sequence Viewer

Length: 357 bp
atgttgaagactaagaatgagaagttggagcttttgcggaggacttctcaaaacacttggcaacaagaaagaaacaagctcacagacgagctacataactcacagagtgacaaaagtccccaaacttggaagatagaatgtgctaaactgaaaaacaaaatcaagattcttgaacttaaggtaaaaggacaacatgctccaaacttaaacctgctaactgaaaatgaatcattgcaggaagaactgaagtccactcaagagaagttcacaaagtttgagataagttctgaaactgcatctacgttattcagctccggaaaagctcaccatgatacattcagacttggatattcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.73

Weight (kDa)

9.21

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 219
AccIII TCCGGA 1 cut(s) 314
AciI CCGC 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 266
AdeI CACNNNGTG 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 126
AflII CTTAAG 1 cut(s) 176
AgsI TTSAA 2 cut(s) 7, 173
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AluBI AGCT 5 cut(s) 31, 79, 91, 312, 323
AluI AGCT 5 cut(s) 31, 79, 91, 312, 323
Aor13HI TCCGGA 1 cut(s) 314
AsuHPI GGTGA 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 14
BfrI CTTAAG 1 cut(s) 176
BfuAI ACCTGC 1 cut(s) 219
BmsI GCATC 1 cut(s) 305
BoxI GACNNNNGTC 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 31, 63
BpuEI CTTGAG 1 cut(s) 240
BsaWI WCCGGW 1 cut(s) 314
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 230
BseAI TCCGGA 1 cut(s) 314
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMI GCAATG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 315
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 102
Bsp13I TCCGGA 1 cut(s) 314
BspACI CCGC 1 cut(s) 37
BspEI TCCGGA 1 cut(s) 314
BspMI ACCTGC 1 cut(s) 219
BspTI CTTAAG 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 230
BstAFI CTTAAG 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 12
BstNSI RCATGY 1 cut(s) 197
BstPAI GACNNNNGTC 1 cut(s) 114
BstV2I GAAGAC 1 cut(s) 14
BveI ACCTGC 1 cut(s) 219
CviAII CATG 2 cut(s) 194, 329
CviJI RGCY 5 cut(s) 31, 79, 91, 312, 323
CviKI_1 RGCY 5 cut(s) 31, 79, 91, 312, 323
DdeI CTNAG 1 cut(s) 12
DraIII CACNNNGTG 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 266
FaeI CATG 2 cut(s) 197, 332
FaiI YATR 3 cut(s) 96, 195, 330
FaqI GGGAC 1 cut(s) 102
FatI CATG 2 cut(s) 193, 328
HapII CCGG 1 cut(s) 315
Hin1II CATG 2 cut(s) 197, 332
HinfI GANTC 2 cut(s) 166, 227
HpaII CCGG 1 cut(s) 315
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 2 cut(s) 252, 267
Hpy188I TCNGA 2 cut(s) 289, 341
Hpy188III TCNNGA 5 cut(s) 163, 170, 257, 315, 354
Hpy8I GTNNAC 2 cut(s) 252, 267
HpyCH4IV ACGT 1 cut(s) 302
HpyCH4V TGCA 2 cut(s) 235, 296
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 302
Hsp92II CATG 2 cut(s) 197, 332
Kpn2I TCCGGA 1 cut(s) 314
LmnI GCTCC 3 cut(s) 28, 202, 317
LpnPI CCDG 3 cut(s) 221, 224, 328
LweI GCATC 1 cut(s) 305
MaeII ACGT 1 cut(s) 302
MaeIII GTNAC 1 cut(s) 107
MboII GAAGA 3 cut(s) 19, 142, 251
MmeI TCCRAC 1 cut(s) 6
MnlI CCTC 1 cut(s) 33
MroI TCCGGA 1 cut(s) 314
MseI TTAA 2 cut(s) 177, 206
MspCI CTTAAG 1 cut(s) 176
MspI CCGG 1 cut(s) 315
NlaIII CATG 2 cut(s) 197, 332
NmuCI GTSAC 1 cut(s) 107
NspI RCATGY 1 cut(s) 197
PfeI GAWTC 2 cut(s) 166, 227
PshAI GACNNNNGTC 1 cut(s) 114
SaqAI TTAA 2 cut(s) 177, 206
SetI ASST 8 cut(s) 33, 81, 93, 183, 213, 305, 314, 325
SfaNI GCATC 1 cut(s) 305
SmlI CTYRAG 2 cut(s) 176, 255
SmoI CTYRAG 2 cut(s) 176, 255
SsiI CCGC 1 cut(s) 37
TaiI ACGT 1 cut(s) 305
TfiI GAWTC 2 cut(s) 166, 227
Tru1I TTAA 2 cut(s) 177, 206
Tru9I TTAA 2 cut(s) 177, 206
TseFI GTSAC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 240
Vha464I CTTAAG 1 cut(s) 176
XceI RCATGY 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.