transposition, RNA-mediated
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1620 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2401 |
| AccI | GTMKAC | 2 cut(s) | 1652, 2531 |
| AclWI | GGATC | 7 cut(s) | 12, 482, 1229, 1420, 1666, 2265, 2571 |
| AcuI | CTGAAG | 1 cut(s) | 2367 |
| AcyI | GRCGYC | 1 cut(s) | 2374 |
| AfaI | GTAC | 2 cut(s) | 1142, 2609 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1036, 2401 |
| AflII | CTTAAG | 1 cut(s) | 962 |
| AjnI | CCWGG | 1 cut(s) | 2110 |
| AleI | CACNNNNGTG | 2 cut(s) | 231, 1590 |
| Alw21I | GWGCWC | 3 cut(s) | 393, 532, 1104 |
| Alw26I | GTCTC | 4 cut(s) | 22, 777, 972, 1286 |
| AlwI | GGATC | 7 cut(s) | 12, 482, 1229, 1420, 1666, 2265, 2571 |
| Ama87I | CYCGRG | 1 cut(s) | 1750 |
| ApeKI | GCWGC | 3 cut(s) | 263, 938, 2478 |
| AseI | ATTAAT | 1 cut(s) | 2520 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 330, 796, 1548 |
| AspS9I | GGNCC | 2 cut(s) | 1640, 2573 |
| AsuHPI | GGTGA | 7 cut(s) | 209, 373, 497, 905, 2015, 2075, 2657 |
| AvaI | CYCGRG | 1 cut(s) | 1750 |
| AvaII | GGWCC | 2 cut(s) | 1640, 2573 |
| BanII | GRGCYC | 1 cut(s) | 532 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1945, 1977 |
| BbsI | GAAGAC | 2 cut(s) | 702, 1859 |
| Bbv12I | GWGCWC | 3 cut(s) | 393, 532, 1104 |
| BbvCI | CCTCAGC | 1 cut(s) | 2341 |
| BbvI | GCAGC | 3 cut(s) | 250, 925, 2465 |
| BccI | CCATC | 4 cut(s) | 44, 79, 2231, 2468 |
| BciT130I | CCWGG | 1 cut(s) | 2112 |
| BciVI | GTATCC | 1 cut(s) | 2126 |
| BclI | TGATCA | 2 cut(s) | 223, 1186 |
| BcoDI | GTCTC | 4 cut(s) | 22, 777, 972, 1286 |
| BfrI | CTTAAG | 1 cut(s) | 962 |
| BfuI | GTATCC | 1 cut(s) | 2126 |
| BglII | AGATCT | 1 cut(s) | 580 |
| BisI | GCNGC | 3 cut(s) | 264, 939, 2479 |
| BlpI | GCTNAGC | 2 cut(s) | 213, 552 |
| BlsI | GCNGC | 3 cut(s) | 265, 940, 2480 |
| BmcAI | AGTACT | 1 cut(s) | 2609 |
| Bme1390I | CCNGG | 1 cut(s) | 2112 |
| Bme18I | GGWCC | 2 cut(s) | 1640, 2573 |
| BmeT110I | CYCGRG | 1 cut(s) | 1750 |
| BmgT120I | GGNCC | 2 cut(s) | 1640, 2573 |
| BmrFI | CCNGG | 1 cut(s) | 2112 |
| BmrI | ACTGGG | 1 cut(s) | 1227 |
| BmuI | ACTGGG | 1 cut(s) | 1227 |
| BpiI | GAAGAC | 2 cut(s) | 702, 1859 |
| BpmI | CTGGAG | 1 cut(s) | 1506 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2341, 2593 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 213, 552 |
| BpuEI | CTTGAG | 2 cut(s) | 87, 561 |
| BsaBI | GATNNNNATC | 1 cut(s) | 711 |
| BsaHI | GRCGYC | 1 cut(s) | 2374 |
| BsaI | GGTCTC | 1 cut(s) | 777 |
| BsaJI | CCNNGG | 1 cut(s) | 1616 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 634, 664, 991, 1021 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1036, 2401 |
| Bse1I | ACTGG | 3 cut(s) | 1222, 1660, 2018 |
| Bse3DI | GCAATG | 1 cut(s) | 1911 |
| Bse8I | GATNNNNATC | 1 cut(s) | 711 |
| BseBI | CCWGG | 1 cut(s) | 2112 |
| BseDI | CCNNGG | 1 cut(s) | 1616 |
| BseGI | GGATG | 3 cut(s) | 427, 1559, 1795 |
| BseJI | GATNNNNATC | 1 cut(s) | 711 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1036, 2401 |
| BseMI | GCAATG | 1 cut(s) | 1911 |
| BseMII | CTCAG | 7 cut(s) | 204, 1034, 1092, 1098, 1645, 2333, 2355 |
| BseNI | ACTGG | 3 cut(s) | 1222, 1660, 2018 |
| BseRI | GAGGAG | 3 cut(s) | 27, 1052, 1486 |
| BseXI | GCAGC | 3 cut(s) | 250, 925, 2465 |
| BsiHKAI | GWGCWC | 3 cut(s) | 393, 532, 1104 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1750 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1036, 2401 |
| BsmAI | GTCTC | 4 cut(s) | 22, 777, 972, 1286 |
| BsmI | GAATGC | 1 cut(s) | 1318 |
| Bso31I | GGTCTC | 1 cut(s) | 777 |
| BsoBI | CYCGRG | 1 cut(s) | 1750 |
| Bsp1286I | GDGCHC | 3 cut(s) | 393, 532, 1104 |
| Bsp1407I | TGTACA | 1 cut(s) | 1140 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 213, 552 |
| BspCNI | CTCAG | 7 cut(s) | 205, 1033, 1091, 1099, 1644, 2332, 2354 |
| BspHI | TCATGA | 2 cut(s) | 343, 1663 |
| BspPI | GGATC | 7 cut(s) | 12, 482, 1229, 1420, 1666, 2265, 2571 |
| BspQI | GCTCTTC | 2 cut(s) | 537, 735 |
| BspTI | CTTAAG | 1 cut(s) | 962 |
| BspTNI | GGTCTC | 1 cut(s) | 777 |
| BsrDI | GCAATG | 1 cut(s) | 1911 |
| BsrGI | TGTACA | 1 cut(s) | 1140 |
| BsrI | ACTGG | 3 cut(s) | 1222, 1660, 2018 |
| BssECI | CCNNGG | 1 cut(s) | 1616 |
| BssNI | GRCGYC | 1 cut(s) | 2374 |
| BssT1I | CCWWGG | 1 cut(s) | 1616 |
| Bst2UI | CCWGG | 1 cut(s) | 2112 |
| Bst4CI | ACNGT | 6 cut(s) | 208, 744, 1140, 1549, 1692, 1768 |
| Bst6I | CTCTTC | 6 cut(s) | 537, 735, 784, 1029, 1948, 2193 |
| BstACI | GRCGYC | 1 cut(s) | 2374 |
| BstAFI | CTTAAG | 1 cut(s) | 962 |
| BstAUI | TGTACA | 1 cut(s) | 1140 |
| BstF5I | GGATG | 3 cut(s) | 427, 1559, 1795 |
| BstMAI | GTCTC | 4 cut(s) | 22, 777, 972, 1286 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 947, 1055, 1937 |
| BstNI | CCWGG | 1 cut(s) | 2112 |
| BstNSI | RCATGY | 1 cut(s) | 1923 |
| BstSCI | CCNGG | 1 cut(s) | 2110 |
| BstV1I | GCAGC | 3 cut(s) | 250, 925, 2465 |
| BstV2I | GAAGAC | 2 cut(s) | 702, 1859 |
| BstX2I | RGATCY | 4 cut(s) | 580, 1412, 1658, 2563 |
| BstYI | RGATCY | 4 cut(s) | 580, 1412, 1658, 2563 |
| BsuI | GTATCC | 1 cut(s) | 2126 |
| BtsCI | GGATG | 3 cut(s) | 427, 1559, 1795 |
| BtsIMutI | CAGTG | 1 cut(s) | 2050 |
| CciI | TCATGA | 2 cut(s) | 343, 1663 |
| Cfr13I | GGNCC | 2 cut(s) | 1640, 2573 |
| CseI | GACGC | 1 cut(s) | 2382 |
| Csp6I | GTAC | 2 cut(s) | 1141, 2608 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2067, 2102 |
| CviAII | CATG | 9 cut(s) | 344, 476, 1031, 1376, 1664, 1920, 1996, 2257, 2384 |
| CviQI | GTAC | 2 cut(s) | 1141, 2608 |
| DraI | TTTAAA | 1 cut(s) | 2127 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1620 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1620 |
| Eam1104I | CTCTTC | 6 cut(s) | 537, 735, 784, 1029, 1948, 2193 |
| EarI | CTCTTC | 6 cut(s) | 537, 735, 784, 1029, 1948, 2193 |
| Ecl136II | GAGCTC | 1 cut(s) | 530 |
| Eco130I | CCWWGG | 1 cut(s) | 1616 |
| Eco24I | GRGCYC | 1 cut(s) | 532 |
| Eco31I | GGTCTC | 1 cut(s) | 777 |
| Eco47I | GGWCC | 2 cut(s) | 1640, 2573 |
| Eco53kI | GAGCTC | 1 cut(s) | 530 |
| Eco57I | CTGAAG | 1 cut(s) | 2367 |
| Eco88I | CYCGRG | 1 cut(s) | 1750 |
| EcoICRI | GAGCTC | 1 cut(s) | 530 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1640 |
| EcoRII | CCWGG | 1 cut(s) | 2110 |
| EcoT14I | CCWWGG | 1 cut(s) | 1616 |
| EcoT22I | ATGCAT | 1 cut(s) | 2559 |
| EcoT38I | GRGCYC | 1 cut(s) | 532 |
| ErhI | CCWWGG | 1 cut(s) | 1616 |
| FaeI | CATG | 9 cut(s) | 347, 479, 1034, 1379, 1667, 1923, 1999, 2260, 2387 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2148, 2180, 2594, 2626 |
| FatI | CATG | 9 cut(s) | 343, 475, 1030, 1375, 1663, 1919, 1995, 2256, 2383 |
| FauNDI | CATATG | 1 cut(s) | 2559 |
| FbaI | TGATCA | 2 cut(s) | 223, 1186 |
| FblI | GTMKAC | 2 cut(s) | 1652, 2531 |
| Fnu4HI | GCNGC | 3 cut(s) | 264, 939, 2479 |
| FokI | GGATG | 3 cut(s) | 434, 1546, 1782 |
| FriOI | GRGCYC | 1 cut(s) | 532 |
| Fsp4HI | GCNGC | 3 cut(s) | 264, 939, 2479 |
| GluI | GCNGC | 3 cut(s) | 264, 939, 2479 |
| GsuI | CTGGAG | 1 cut(s) | 1506 |
| HgaI | GACGC | 1 cut(s) | 2382 |
| Hin1I | GRCGYC | 1 cut(s) | 2374 |
| Hin1II | CATG | 9 cut(s) | 347, 479, 1034, 1379, 1667, 1923, 1999, 2260, 2387 |
| HindIII | AAGCTT | 2 cut(s) | 315, 2590 |
| HphI | GGTGA | 7 cut(s) | 209, 373, 497, 905, 2015, 2075, 2657 |
| Hpy166II | GTNNAC | 5 cut(s) | 204, 1653, 2264, 2389, 2532 |
| Hpy8I | GTNNAC | 5 cut(s) | 204, 1653, 2264, 2389, 2532 |
| HpyAV | CCTTC | 4 cut(s) | 358, 1105, 1719, 2141 |
| HpyCH4III | ACNGT | 6 cut(s) | 208, 744, 1140, 1549, 1692, 1768 |
| HpyCH4V | TGCA | 9 cut(s) | 97, 767, 950, 1237, 1245, 1300, 1745, 2481, 2557 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 947, 1055, 1937 |
| Hsp92I | GRCGYC | 1 cut(s) | 2374 |
| Hsp92II | CATG | 9 cut(s) | 347, 479, 1034, 1379, 1667, 1923, 1999, 2260, 2387 |
| Ksp22I | TGATCA | 2 cut(s) | 223, 1186 |
| LguI | GCTCTTC | 2 cut(s) | 537, 735 |
| LmnI | GCTCC | 2 cut(s) | 1499, 2113 |
| Lsp1109I | GCAGC | 3 cut(s) | 250, 925, 2465 |
| MaeIII | GTNAC | 6 cut(s) | 350, 460, 1583, 2053, 2063, 2101 |
| MfeI | CAATTG | 3 cut(s) | 666, 1407, 2180 |
| MflI | RGATCY | 4 cut(s) | 580, 1412, 1658, 2563 |
| MhlI | GDGCHC | 3 cut(s) | 393, 532, 1104 |
| MlyI | GAGTC | 6 cut(s) | 24, 641, 1082, 1288, 2145, 2185 |
| MmeI | TCCRAC | 5 cut(s) | 119, 252, 329, 1050, 2551 |
| Mph1103I | ATGCAT | 1 cut(s) | 2559 |
| MroXI | GAANNNNTTC | 3 cut(s) | 330, 796, 1548 |
| MslI | CAYNNNNRTG | 2 cut(s) | 231, 1590 |
| MspA1I | CMGCKG | 1 cut(s) | 2345 |
| MspCI | CTTAAG | 1 cut(s) | 962 |
| MspR9I | CCNGG | 1 cut(s) | 2112 |
| MunI | CAATTG | 3 cut(s) | 666, 1407, 2180 |
| Mva1269I | GAATGC | 1 cut(s) | 1318 |
| MvaI | CCWGG | 1 cut(s) | 2112 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 947, 1055, 1937 |
| NdeI | CATATG | 1 cut(s) | 2559 |
| NlaIII | CATG | 9 cut(s) | 347, 479, 1034, 1379, 1667, 1923, 1999, 2260, 2387 |
| NmuCI | GTSAC | 3 cut(s) | 1583, 2053, 2063 |
| NsiI | ATGCAT | 1 cut(s) | 2559 |
| NspI | RCATGY | 1 cut(s) | 1923 |
| OliI | CACNNNNGTG | 2 cut(s) | 231, 1590 |
| PagI | TCATGA | 2 cut(s) | 343, 1663 |
| PciSI | GCTCTTC | 2 cut(s) | 537, 735 |
| PctI | GAATGC | 1 cut(s) | 1318 |
| PdmI | GAANNNNTTC | 3 cut(s) | 330, 796, 1548 |
| PfeI | GAWTC | 6 cut(s) | 425, 587, 1010, 1085, 1907, 2208 |
| PflFI | GACNNNGTC | 1 cut(s) | 2402 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2401 |
| PkrI | GCNGC | 3 cut(s) | 265, 940, 2480 |
| PleI | GAGTC | 6 cut(s) | 23, 640, 1081, 1288, 2145, 2184 |
| PpsI | GAGTC | 6 cut(s) | 23, 640, 1081, 1288, 2145, 2184 |
| PpuMI | RGGWCCY | 1 cut(s) | 1640 |
| PshBI | ATTAAT | 1 cut(s) | 2520 |
| Psp124BI | GAGCTC | 1 cut(s) | 532 |
| Psp5II | RGGWCCY | 1 cut(s) | 1640 |
| Psp6I | CCWGG | 1 cut(s) | 2110 |
| PspGI | CCWGG | 1 cut(s) | 2110 |
| PspPI | GGNCC | 2 cut(s) | 1640, 2573 |
| PspPPI | RGGWCCY | 1 cut(s) | 1640 |
| PsuI | RGATCY | 4 cut(s) | 580, 1412, 1658, 2563 |
| PsyI | GACNNNGTC | 1 cut(s) | 2402 |
| PvuII | CAGCTG | 1 cut(s) | 2345 |
| RsaI | GTAC | 2 cut(s) | 1142, 2609 |
| RsaNI | GTAC | 2 cut(s) | 1141, 2608 |
| RseI | CAYNNNNRTG | 2 cut(s) | 231, 1590 |
| SacI | GAGCTC | 1 cut(s) | 532 |
| SapI | GCTCTTC | 2 cut(s) | 537, 735 |
| SatI | GCNGC | 3 cut(s) | 264, 939, 2479 |
| Sau96I | GGNCC | 2 cut(s) | 1640, 2573 |
| ScaI | AGTACT | 1 cut(s) | 2609 |
| SchI | GAGTC | 6 cut(s) | 24, 641, 1082, 1288, 2145, 2185 |
| ScrFI | CCNGG | 1 cut(s) | 2112 |
| SduI | GDGCHC | 3 cut(s) | 393, 532, 1104 |
| SinI | GGWCC | 2 cut(s) | 1640, 2573 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 231, 1590 |
| SmlI | CTYRAG | 4 cut(s) | 102, 576, 962, 2654 |
| SmoI | CTYRAG | 4 cut(s) | 102, 576, 962, 2654 |
| SstI | GAGCTC | 1 cut(s) | 532 |
| StyD4I | CCNGG | 1 cut(s) | 2110 |
| StyI | CCWWGG | 1 cut(s) | 1616 |
| TaaI | ACNGT | 6 cut(s) | 208, 744, 1140, 1549, 1692, 1768 |
| TaqI | TCGA | 4 cut(s) | 393, 526, 1131, 2625 |
| TatI | WGTACW | 2 cut(s) | 1140, 2607 |
| TfiI | GAWTC | 6 cut(s) | 425, 587, 1010, 1085, 1907, 2208 |
| TscAI | CASTG | 1 cut(s) | 2050 |
| TseFI | GTSAC | 3 cut(s) | 1583, 2053, 2063 |
| TseI | GCWGC | 3 cut(s) | 263, 938, 2478 |
| Tsp45I | GTSAC | 3 cut(s) | 1583, 2053, 2063 |
| TspGWI | ACGGA | 1 cut(s) | 2082 |
| TspRI | CASTG | 1 cut(s) | 2050 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2402 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2401 |
| Vha464I | CTTAAG | 1 cut(s) | 962 |
| VpaK11BI | GGWCC | 2 cut(s) | 1640, 2573 |
| VspI | ATTAAT | 1 cut(s) | 2520 |
| XbaI | TCTAGA | 3 cut(s) | 715, 788, 1949 |
| XceI | RCATGY | 1 cut(s) | 1923 |
| XmiI | GTMKAC | 2 cut(s) | 1652, 2531 |
| XmnI | GAANNNNTTC | 3 cut(s) | 330, 796, 1548 |
| ZrmI | AGTACT | 1 cut(s) | 2609 |
| Zsp2I | ATGCAT | 1 cut(s) | 2559 |