GAG-pre-integrase domain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 326 - 400 | 9.6e-19 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 431 - 502 | 5.1e-13 | GAG-pre-integrase domain |
| rve | PF00665 | 520 - 620 | 9.2e-12 | Integrase core domain |
| SH3_retrovirus | PF25597 | 694 - 748 | 2.7e-14 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 891 - 1134 | 3.5e-75 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1221 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1452 |
| Acc36I | ACCTGC | 6 cut(s) | 938, 1221, 1252, 1922, 2132, 2374 |
| AccB1I | GGYRCC | 4 cut(s) | 1233, 1513, 2720, 3049 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 205 |
| AccI | GTMKAC | 2 cut(s) | 3197, 3779 |
| AciI | CCGC | 4 cut(s) | 1088, 1228, 2197, 2267 |
| AclWI | GGATC | 3 cut(s) | 2120, 2403, 3987 |
| AcuI | CTGAAG | 4 cut(s) | 90, 2319, 3441, 3807 |
| AfaI | GTAC | 9 cut(s) | 695, 834, 2011, 2388, 2491, 3101, 3458, 3797, 3930 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 205, 3459 |
| AflIII | ACRYGT | 1 cut(s) | 3629 |
| AhlI | ACTAGT | 1 cut(s) | 2584 |
| AjnI | CCWGG | 6 cut(s) | 344, 1120, 1655, 2005, 2511, 2977 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 126, 158, 188, 220 |
| Alw21I | GWGCWC | 4 cut(s) | 590, 1285, 3404, 3704 |
| Alw26I | GTCTC | 2 cut(s) | 816, 1996 |
| AlwI | GGATC | 3 cut(s) | 2120, 2403, 3987 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2012, 3605 |
| Ama87I | CYCGRG | 1 cut(s) | 248 |
| AoxI | GGCC | 5 cut(s) | 746, 2778, 3027, 3286, 3543 |
| ApeKI | GCWGC | 6 cut(s) | 32, 2274, 3474, 3653, 3803, 3816 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 2434, 2466, 3173, 3205 |
| AseI | ATTAAT | 1 cut(s) | 2634 |
| AspS9I | GGNCC | 3 cut(s) | 1583, 3028, 3462 |
| AsuHPI | GGTGA | 5 cut(s) | 555, 1085, 1645, 1839, 3278 |
| AsuII | TTCGAA | 1 cut(s) | 3249 |
| AvaI | CYCGRG | 1 cut(s) | 248 |
| AvaII | GGWCC | 2 cut(s) | 1583, 3462 |
| BaeGI | GKGCMC | 1 cut(s) | 1395 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2001, 2034 |
| BanI | GGYRCC | 4 cut(s) | 1233, 1513, 2720, 3049 |
| BanII | GRGCYC | 1 cut(s) | 1285 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 279, 311 |
| BbsI | GAAGAC | 1 cut(s) | 3429 |
| Bbv12I | GWGCWC | 4 cut(s) | 590, 1285, 3404, 3704 |
| BbvI | GCAGC | 6 cut(s) | 44, 2286, 3486, 3665, 3803, 3815 |
| BccI | CCATC | 3 cut(s) | 1070, 1573, 2333 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3782, 3816 |
| BciT130I | CCWGG | 6 cut(s) | 346, 1122, 1657, 2007, 2513, 2979 |
| BciVI | GTATCC | 2 cut(s) | 539, 964 |
| BclI | TGATCA | 2 cut(s) | 304, 3205 |
| BcoDI | GTCTC | 2 cut(s) | 816, 1996 |
| BcuI | ACTAGT | 1 cut(s) | 2584 |
| BfmI | CTRYAG | 8 cut(s) | 296, 323, 431, 1342, 1929, 2430, 2948, 3441 |
| BfuAI | ACCTGC | 6 cut(s) | 938, 1221, 1252, 1922, 2132, 2374 |
| BfuI | GTATCC | 2 cut(s) | 539, 964 |
| BglII | AGATCT | 2 cut(s) | 1766, 4105 |
| BisI | GCNGC | 7 cut(s) | 33, 1228, 2275, 3475, 3654, 3804, 3817 |
| BlpI | GCTNAGC | 1 cut(s) | 479 |
| BlsI | GCNGC | 7 cut(s) | 34, 1229, 2276, 3476, 3655, 3805, 3818 |
| BmcAI | AGTACT | 1 cut(s) | 3930 |
| Bme1390I | CCNGG | 6 cut(s) | 346, 1122, 1657, 2007, 2513, 2979 |
| Bme18I | GGWCC | 2 cut(s) | 1583, 3462 |
| BmeT110I | CYCGRG | 1 cut(s) | 248 |
| BmgT120I | GGNCC | 3 cut(s) | 1583, 3028, 3462 |
| BmiI | GGNNCC | 6 cut(s) | 197, 1235, 1515, 1584, 2722, 3051 |
| BmrFI | CCNGG | 6 cut(s) | 346, 1122, 1657, 2007, 2513, 2979 |
| BmrI | ACTGGG | 1 cut(s) | 3682 |
| BmsI | GCATC | 6 cut(s) | 1075, 1911, 2128, 2230, 3655, 3834 |
| BmuI | ACTGGG | 1 cut(s) | 3682 |
| BpiI | GAAGAC | 1 cut(s) | 3429 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 3669, 3701, 4075, 4107 |
| BpmI | CTGGAG | 1 cut(s) | 1741 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 479 |
| Bpu14I | TTCGAA | 1 cut(s) | 3249 |
| BpuEI | CTTGAG | 4 cut(s) | 212, 1269, 2020, 2778 |
| BsaI | GGTCTC | 1 cut(s) | 1996 |
| BsaJI | CCNNGG | 4 cut(s) | 603, 1509, 1656, 3868 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 2824, 2854, 2945, 2975 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 205, 3459 |
| Bse3DI | GCAATG | 1 cut(s) | 3798 |
| BseBI | CCWGG | 6 cut(s) | 346, 1122, 1657, 2007, 2513, 2979 |
| BseDI | CCNNGG | 4 cut(s) | 603, 1509, 1656, 3868 |
| BseGI | GGATG | 5 cut(s) | 765, 1216, 1366, 1439, 2923 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 205, 3459 |
| BseMI | GCAATG | 1 cut(s) | 3798 |
| BseRI | GAGGAG | 1 cut(s) | 83 |
| BseSI | GKGCMC | 1 cut(s) | 1395 |
| BseXI | GCAGC | 6 cut(s) | 44, 2286, 3486, 3665, 3803, 3815 |
| BsgI | GTGCAG | 3 cut(s) | 2426, 3802, 3917 |
| BshFI | GGCC | 5 cut(s) | 748, 2780, 3029, 3288, 3545 |
| BshNI | GGYRCC | 4 cut(s) | 1233, 1513, 2720, 3049 |
| BsiHKAI | GWGCWC | 4 cut(s) | 590, 1285, 3404, 3704 |
| BsiHKCI | CYCGRG | 1 cut(s) | 248 |
| BslFI | GGGAC | 5 cut(s) | 1120, 1458, 1596, 2696, 3544 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 205, 3459 |
| BsmAI | GTCTC | 2 cut(s) | 816, 1996 |
| BsmFI | GGGAC | 5 cut(s) | 1120, 1458, 1596, 2696, 3544 |
| BsmI | GAATGC | 4 cut(s) | 80, 1131, 1924, 4098 |
| BsnI | GGCC | 5 cut(s) | 748, 2780, 3029, 3288, 3545 |
| Bso31I | GGTCTC | 1 cut(s) | 1996 |
| BsoBI | CYCGRG | 1 cut(s) | 248 |
| Bsp119I | TTCGAA | 1 cut(s) | 3249 |
| Bsp1286I | GDGCHC | 5 cut(s) | 590, 1285, 1395, 3404, 3704 |
| Bsp1407I | TGTACA | 1 cut(s) | 3456 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 479 |
| Bsp19I | CCATGG | 1 cut(s) | 603 |
| BspACI | CCGC | 4 cut(s) | 1088, 1228, 2197, 2267 |
| BspANI | GGCC | 5 cut(s) | 748, 2780, 3029, 3288, 3545 |
| BspHI | TCATGA | 1 cut(s) | 1834 |
| BspLI | GGNNCC | 6 cut(s) | 197, 1235, 1515, 1584, 2722, 3051 |
| BspMAI | CTGCAG | 4 cut(s) | 327, 1933, 2434, 2952 |
| BspMI | ACCTGC | 6 cut(s) | 938, 1221, 1252, 1922, 2132, 2374 |
| BspPI | GGATC | 3 cut(s) | 2120, 2403, 3987 |
| BspQI | GCTCTTC | 2 cut(s) | 109, 578 |
| BspT104I | TTCGAA | 1 cut(s) | 3249 |
| BspT107I | GGYRCC | 4 cut(s) | 1233, 1513, 2720, 3049 |
| BspTNI | GGTCTC | 1 cut(s) | 1996 |
| BsrDI | GCAATG | 1 cut(s) | 3798 |
| BsrGI | TGTACA | 1 cut(s) | 3456 |
| BssECI | CCNNGG | 4 cut(s) | 603, 1509, 1656, 3868 |
| BssT1I | CCWWGG | 3 cut(s) | 603, 1509, 3868 |
| Bst2UI | CCWGG | 6 cut(s) | 346, 1122, 1657, 2007, 2513, 2979 |
| Bst6I | CTCTTC | 7 cut(s) | 109, 207, 578, 606, 1812, 1849, 3374 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 3605, 3650 |
| BstAUI | TGTACA | 1 cut(s) | 3456 |
| BstBI | TTCGAA | 1 cut(s) | 3249 |
| BstC8I | GCNNGC | 4 cut(s) | 323, 507, 3290, 3496 |
| BstDSI | CCRYGG | 1 cut(s) | 603 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3457 |
| BstF5I | GGATG | 5 cut(s) | 765, 1216, 1366, 1439, 2923 |
| BstMAI | GTCTC | 2 cut(s) | 816, 1996 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 475, 947, 1233, 1532, 2249, 2846, 3056, 3605, 3650 |
| BstNI | CCWGG | 6 cut(s) | 346, 1122, 1657, 2007, 2513, 2979 |
| BstNSI | RCATGY | 5 cut(s) | 1328, 1977, 2889, 3319, 3633 |
| BstSCI | CCNGG | 6 cut(s) | 344, 1120, 1655, 2005, 2511, 2977 |
| BstSFI | CTRYAG | 8 cut(s) | 296, 323, 431, 1342, 1929, 2430, 2948, 3441 |
| BstSLI | GKGCMC | 1 cut(s) | 1395 |
| BstV1I | GCAGC | 6 cut(s) | 44, 2286, 3486, 3665, 3803, 3815 |
| BstV2I | GAAGAC | 1 cut(s) | 3429 |
| BstX2I | RGATCY | 3 cut(s) | 1766, 3979, 4105 |
| BstYI | RGATCY | 3 cut(s) | 1766, 3979, 4105 |
| BsuI | GTATCC | 2 cut(s) | 539, 964 |
| BsuRI | GGCC | 5 cut(s) | 748, 2780, 3029, 3288, 3545 |
| BtgI | CCRYGG | 1 cut(s) | 603 |
| BtgZI | GCGATG | 1 cut(s) | 3145 |
| BtsCI | GGATG | 5 cut(s) | 765, 1216, 1366, 1439, 2923 |
| BtsIMutI | CAGTG | 9 cut(s) | 158, 627, 994, 1053, 2295, 2409, 3402, 3773, 4062 |
| BveI | ACCTGC | 6 cut(s) | 938, 1221, 1252, 1922, 2132, 2374 |
| Cac8I | GCNNGC | 4 cut(s) | 323, 507, 3290, 3496 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2012, 3605 |
| CciI | TCATGA | 1 cut(s) | 1834 |
| Cfr13I | GGNCC | 3 cut(s) | 1583, 3028, 3462 |
| CseI | GACGC | 1 cut(s) | 162 |
| CsiI | ACCWGGT | 2 cut(s) | 2005, 2511 |
| Csp6I | GTAC | 9 cut(s) | 694, 833, 2010, 2387, 2490, 3100, 3457, 3796, 3929 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3812, 3847 |
| CviQI | GTAC | 9 cut(s) | 694, 833, 2010, 2387, 2490, 3100, 3457, 3796, 3929 |
| DraI | TTTAAA | 6 cut(s) | 169, 390, 399, 1789, 2097, 2902 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1452 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1452 |
| Eam1104I | CTCTTC | 7 cut(s) | 109, 207, 578, 606, 1812, 1849, 3374 |
| EarI | CTCTTC | 7 cut(s) | 109, 207, 578, 606, 1812, 1849, 3374 |
| Ecl136II | GAGCTC | 1 cut(s) | 1283 |
| Eco130I | CCWWGG | 3 cut(s) | 603, 1509, 3868 |
| Eco147I | AGGCCT | 1 cut(s) | 748 |
| Eco24I | GRGCYC | 1 cut(s) | 1285 |
| Eco31I | GGTCTC | 1 cut(s) | 1996 |
| Eco32I | GATATC | 2 cut(s) | 149, 3965 |
| Eco47I | GGWCC | 2 cut(s) | 1583, 3462 |
| Eco53kI | GAGCTC | 1 cut(s) | 1283 |
| Eco57I | CTGAAG | 4 cut(s) | 90, 2319, 3441, 3807 |
| Eco88I | CYCGRG | 1 cut(s) | 248 |
| EcoICRI | GAGCTC | 1 cut(s) | 1283 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3457 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1583, 3028 |
| EcoRI | GAATTC | 4 cut(s) | 361, 1664, 2436, 3245 |
| EcoRII | CCWGG | 6 cut(s) | 344, 1120, 1655, 2005, 2511, 2977 |
| EcoRV | GATATC | 2 cut(s) | 149, 3965 |
| EcoT14I | CCWWGG | 3 cut(s) | 603, 1509, 3868 |
| EcoT22I | ATGCAT | 1 cut(s) | 1926 |
| EcoT38I | GRGCYC | 1 cut(s) | 1285 |
| ErhI | CCWWGG | 3 cut(s) | 603, 1509, 3868 |
| FaqI | GGGAC | 5 cut(s) | 1120, 1458, 1596, 2696, 3544 |
| FauNDI | CATATG | 3 cut(s) | 501, 1005, 1829 |
| FbaI | TGATCA | 2 cut(s) | 304, 3205 |
| FblI | GTMKAC | 2 cut(s) | 3197, 3779 |
| Fnu4HI | GCNGC | 7 cut(s) | 33, 1228, 2275, 3475, 3654, 3804, 3817 |
| FokI | GGATG | 5 cut(s) | 772, 1223, 1373, 1446, 2930 |
| FriOI | GRGCYC | 1 cut(s) | 1285 |
| Fsp4HI | GCNGC | 7 cut(s) | 33, 1228, 2275, 3475, 3654, 3804, 3817 |
| GluI | GCNGC | 7 cut(s) | 33, 1228, 2275, 3475, 3654, 3804, 3817 |
| GsuI | CTGGAG | 1 cut(s) | 1741 |
| HaeIII | GGCC | 5 cut(s) | 748, 2780, 3029, 3288, 3545 |
| HgaI | GACGC | 1 cut(s) | 162 |
| HincII | GTYRAC | 4 cut(s) | 559, 1190, 3118, 3879 |
| HindII | GTYRAC | 4 cut(s) | 559, 1190, 3118, 3879 |
| HpaI | GTTAAC | 1 cut(s) | 3879 |
| HphI | GGTGA | 5 cut(s) | 555, 1085, 1645, 1839, 3278 |
| HpyAV | CCTTC | 9 cut(s) | 92, 265, 577, 1411, 1596, 2386, 2807, 3019, 3286 |
| HpyCH4IV | ACGT | 1 cut(s) | 549 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 475, 947, 1233, 1532, 2249, 2846, 3056, 3605, 3650 |
| HpySE526I | ACGT | 1 cut(s) | 549 |
| Ksp22I | TGATCA | 2 cut(s) | 304, 3205 |
| KspAI | GTTAAC | 1 cut(s) | 3879 |
| LguI | GCTCTTC | 2 cut(s) | 109, 578 |
| LmnI | GCTCC | 3 cut(s) | 450, 2845, 3238 |
| Lsp1109I | GCAGC | 6 cut(s) | 44, 2286, 3486, 3665, 3803, 3815 |
| LweI | GCATC | 6 cut(s) | 1075, 1911, 2128, 2230, 3655, 3834 |
| MabI | ACCWGGT | 2 cut(s) | 2005, 2511 |
| MaeII | ACGT | 1 cut(s) | 549 |
| MfeI | CAATTG | 1 cut(s) | 1291 |
| MflI | RGATCY | 3 cut(s) | 1766, 3979, 4105 |
| MhlI | GDGCHC | 5 cut(s) | 590, 1285, 1395, 3404, 3704 |
| MlyI | GAGTC | 6 cut(s) | 110, 260, 554, 914, 2615, 3566 |
| MmeI | TCCRAC | 2 cut(s) | 532, 2835 |
| Mph1103I | ATGCAT | 1 cut(s) | 1926 |
| MslI | CAYNNNNRTG | 2 cut(s) | 723, 3824 |
| MspA1I | CMGCKG | 2 cut(s) | 2267, 3806 |
| MspR9I | CCNGG | 6 cut(s) | 346, 1122, 1657, 2007, 2513, 2979 |
| MunI | CAATTG | 1 cut(s) | 1291 |
| Mva1269I | GAATGC | 4 cut(s) | 80, 1131, 1924, 4098 |
| MvaI | CCWGG | 6 cut(s) | 346, 1122, 1657, 2007, 2513, 2979 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 475, 947, 1233, 1532, 2249, 2846, 3056, 3605, 3650 |
| NcoI | CCATGG | 1 cut(s) | 603 |
| NdeI | CATATG | 3 cut(s) | 501, 1005, 1829 |
| NlaIV | GGNNCC | 6 cut(s) | 197, 1235, 1515, 1584, 2722, 3051 |
| NmeAIII | GCCGAG | 1 cut(s) | 3817 |
| NmuCI | GTSAC | 3 cut(s) | 2580, 3075, 3406 |
| NsiI | ATGCAT | 1 cut(s) | 1926 |
| NspI | RCATGY | 5 cut(s) | 1328, 1977, 2889, 3319, 3633 |
| NspV | TTCGAA | 1 cut(s) | 3249 |
| PaeR7I | CTCGAG | 1 cut(s) | 248 |
| PagI | TCATGA | 1 cut(s) | 1834 |
| PaqCI | CACCTGC | 1 cut(s) | 1221 |
| PceI | AGGCCT | 1 cut(s) | 748 |
| PciI | ACATGT | 1 cut(s) | 3629 |
| PciSI | GCTCTTC | 2 cut(s) | 109, 578 |
| PctI | GAATGC | 4 cut(s) | 80, 1131, 1924, 4098 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 205 |
| PfoI | TCCNGGA | 2 cut(s) | 344, 1120 |
| PkrI | GCNGC | 7 cut(s) | 34, 1229, 2276, 3476, 3655, 3805, 3818 |
| PleI | GAGTC | 6 cut(s) | 110, 259, 554, 914, 2615, 3565 |
| PpsI | GAGTC | 6 cut(s) | 110, 259, 554, 914, 2615, 3565 |
| PpuMI | RGGWCCY | 1 cut(s) | 1583 |
| PscI | ACATGT | 1 cut(s) | 3629 |
| PshBI | ATTAAT | 1 cut(s) | 2634 |
| Psp124BI | GAGCTC | 1 cut(s) | 1285 |
| Psp5II | RGGWCCY | 1 cut(s) | 1583 |
| Psp6I | CCWGG | 6 cut(s) | 344, 1120, 1655, 2005, 2511, 2977 |
| PspGI | CCWGG | 6 cut(s) | 344, 1120, 1655, 2005, 2511, 2977 |
| PspN4I | GGNNCC | 6 cut(s) | 197, 1235, 1515, 1584, 2722, 3051 |
| PspPI | GGNCC | 3 cut(s) | 1583, 3028, 3462 |
| PspPPI | RGGWCCY | 1 cut(s) | 1583 |
| PstI | CTGCAG | 4 cut(s) | 327, 1933, 2434, 2952 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2012, 3605 |
| PsuI | RGATCY | 3 cut(s) | 1766, 3979, 4105 |
| PvuII | CAGCTG | 1 cut(s) | 3806 |
| RsaI | GTAC | 9 cut(s) | 695, 834, 2011, 2388, 2491, 3101, 3458, 3797, 3930 |
| RsaNI | GTAC | 9 cut(s) | 694, 833, 2010, 2387, 2490, 3100, 3457, 3796, 3929 |
| RseI | CAYNNNNRTG | 2 cut(s) | 723, 3824 |
| SacI | GAGCTC | 1 cut(s) | 1285 |
| SapI | GCTCTTC | 2 cut(s) | 109, 578 |
| SatI | GCNGC | 7 cut(s) | 33, 1228, 2275, 3475, 3654, 3804, 3817 |
| Sau96I | GGNCC | 3 cut(s) | 1583, 3028, 3462 |
| ScaI | AGTACT | 1 cut(s) | 3930 |
| SchI | GAGTC | 6 cut(s) | 110, 260, 554, 914, 2615, 3566 |
| ScrFI | CCNGG | 6 cut(s) | 346, 1122, 1657, 2007, 2513, 2979 |
| SduI | GDGCHC | 5 cut(s) | 590, 1285, 1395, 3404, 3704 |
| SexAI | ACCWGGT | 2 cut(s) | 2005, 2511 |
| SfaNI | GCATC | 6 cut(s) | 1075, 1911, 2128, 2230, 3655, 3834 |
| SfcI | CTRYAG | 8 cut(s) | 296, 323, 431, 1342, 1929, 2430, 2948, 3441 |
| Sfr274I | CTCGAG | 1 cut(s) | 248 |
| SfuI | TTCGAA | 1 cut(s) | 3249 |
| SinI | GGWCC | 2 cut(s) | 1583, 3462 |
| SlaI | CTCGAG | 1 cut(s) | 248 |
| SmiI | ATTTAAAT | 1 cut(s) | 2902 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 723, 3824 |
| SmlI | CTYRAG | 5 cut(s) | 227, 248, 1284, 1999, 2793 |
| SmoI | CTYRAG | 5 cut(s) | 227, 248, 1284, 1999, 2793 |
| SpeI | ACTAGT | 1 cut(s) | 2584 |
| SseBI | AGGCCT | 1 cut(s) | 748 |
| SsiI | CCGC | 4 cut(s) | 1088, 1228, 2197, 2267 |
| SspI | AATATT | 1 cut(s) | 331 |
| SstI | GAGCTC | 1 cut(s) | 1285 |
| StuI | AGGCCT | 1 cut(s) | 748 |
| StyD4I | CCNGG | 6 cut(s) | 344, 1120, 1655, 2005, 2511, 2977 |
| StyI | CCWWGG | 3 cut(s) | 603, 1509, 3868 |
| SwaI | ATTTAAAT | 1 cut(s) | 2902 |
| TaiI | ACGT | 1 cut(s) | 552 |
| TaqI | TCGA | 9 cut(s) | 249, 354, 465, 1279, 1557, 2452, 2668, 3249, 3589 |
| TatI | WGTACW | 6 cut(s) | 693, 832, 2489, 3456, 3795, 3928 |
| TauI | GCSGC | 1 cut(s) | 1230 |
| TscAI | CASTG | 9 cut(s) | 158, 627, 994, 1060, 2302, 2409, 3409, 3780, 4069 |
| TseFI | GTSAC | 3 cut(s) | 2580, 3075, 3406 |
| TseI | GCWGC | 6 cut(s) | 32, 2274, 3474, 3653, 3803, 3816 |
| Tsp45I | GTSAC | 3 cut(s) | 2580, 3075, 3406 |
| TspRI | CASTG | 9 cut(s) | 158, 627, 994, 1060, 2302, 2409, 3409, 3780, 4069 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 205 |
| VpaK11BI | GGWCC | 2 cut(s) | 1583, 3462 |
| VspI | ATTAAT | 1 cut(s) | 2634 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3457 |
| XbaI | TCTAGA | 2 cut(s) | 1646, 3104 |
| XceI | RCATGY | 5 cut(s) | 1328, 1977, 2889, 3319, 3633 |
| XhoI | CTCGAG | 1 cut(s) | 248 |
| XmiI | GTMKAC | 2 cut(s) | 3197, 3779 |
| ZrmI | AGTACT | 1 cut(s) | 3930 |
| Zsp2I | ATGCAT | 1 cut(s) | 1926 |