FvH4_5g17842

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000703
Physical Location & Seq
Reverse (-)
10237168 .. 10244328
7161 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17842.t1

Sequence Viewer

Length: 693 bp
ATGGGCATTGGGAGAGGGGTGATTAGAGCGACGTCTTGGAGCACGGTTCGGGTTTCGGGTTGCAAAGATTTAGGGGAGTCGGATTCGGCGAGGGAGAAACAAGTGGTGAGGTTTTTGAATGTGAAGGGTTTGGGTTTAAGGGAGGTGGAAGTGGGGACGTGGTGGGGATTTCGGAGAAAGAGGAGGGTACGTGGTGGAGGAAGAGAAGAGAAGCCATTTTTGGAAGTGTTGTATGATCATGCCGAAGCTTTGAACCCTCCACCCGAGCCCGACCTCATGCCCTATGGGCCGAGCCGAGATGGGCTTTTCTATTGCCCGGGCCACCCACGGGCTTTTAGGGCTGCAGGCCAAATGATGACCCCTAATTCTAACGTTGAATTGAAAGAAGCTCATAATCGATTCGACAAGTTTGAGATCAGCTCAAAGAAAGTTTCAAAAATGATTGGACTTGGAAGATGTCACAATAATCACGAAGGACTTCGTTTTGGAAGCGAATCAGGCAAACCAACTCATTCTGTGAAAGAAAGTCGCCAGCAGGATAGAACTGACGTTTCAATCCCGAGCAGGAAAGTCGATGTTGAAGACTCAAAAATAGAAATTGCACCTCAAAGGTTAATTCCACCTCATCTCAAGGCTGCTCAGGAACACTCAGAGGAAGAGGAAGTGGAAGGAGTCAAAGTTAAACCCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

25.86

Weight (kDa)

9.25

Isoelectric Point (pI)

49.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 35
AclI AACGTT 1 cut(s) 372
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 7 cut(s) 118, 253, 377, 382, 435, 555, 581
AjiI CACGTC 1 cut(s) 159
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 3 cut(s) 248, 389, 420
AluI AGCT 3 cut(s) 248, 389, 420
Alw21I GWGCWC 1 cut(s) 44
Ama87I CYCGRG 3 cut(s) 263, 316, 559
AoxI GGCC 3 cut(s) 287, 319, 346
ApeKI GCWGC 2 cut(s) 341, 635
Asp700I GAANNNNTTC 1 cut(s) 477
AspS9I GGNCC 2 cut(s) 287, 319
AsuC2I CCSGG 2 cut(s) 317, 318
AsuHPI GGTGA 2 cut(s) 31, 118
AvaI CYCGRG 3 cut(s) 263, 316, 559
BanII GRGCYC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 588
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 2 cut(s) 328, 622
BccI CCATC 1 cut(s) 293
BcgI CGANNNNNNTGC 2 cut(s) 553, 587
BclI TGATCA 1 cut(s) 235
BcnI CCSGG 2 cut(s) 317, 318
BfmI CTRYAG 1 cut(s) 342
BglI GCCNNNNNGGC 1 cut(s) 286
BisI GCNGC 2 cut(s) 342, 636
BlsI GCNGC 2 cut(s) 343, 637
Bme1390I CCNGG 2 cut(s) 317, 318
BmeT110I CYCGRG 3 cut(s) 263, 316, 559
BmgBI CACGTC 1 cut(s) 159
BmgT120I GGNCC 2 cut(s) 287, 319
BmrFI CCNGG 2 cut(s) 317, 318
BpiI GAAGAC 1 cut(s) 588
BplI GAGNNNNNCTC 2 cut(s) 404, 436
Bpu10I CCTNAGC 1 cut(s) 639
BpuEI CTTGAG 1 cut(s) 614
BpuMI CCSGG 2 cut(s) 317, 318
Bsa29I ATCGAT 1 cut(s) 397
BsaAI YACGTR 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 316, 326
BsaXI ACNNNNNCTCC 4 cut(s) 175, 205, 663, 693
Bsc4I CCNNNNNNNGG 1 cut(s) 328
BseCI ATCGAT 1 cut(s) 397
BseDI CCNNGG 2 cut(s) 316, 326
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMII CTCAG 2 cut(s) 653, 663
BseRI GAGGAG 1 cut(s) 196
BseXI GCAGC 2 cut(s) 328, 622
BshFI GGCC 3 cut(s) 289, 321, 348
BshVI ATCGAT 1 cut(s) 397
BsiHKAI GWGCWC 1 cut(s) 44
BsiHKCI CYCGRG 3 cut(s) 263, 316, 559
BsiSI CCGG 1 cut(s) 317
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 328
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 3 cut(s) 289, 321, 348
BsoBI CYCGRG 3 cut(s) 263, 316, 559
Bsp1286I GDGCHC 2 cut(s) 44, 270
Bsp143I GATC 2 cut(s) 235, 414
BspANI GGCC 3 cut(s) 289, 321, 348
BspCNI CTCAG 2 cut(s) 652, 662
BspDI ATCGAT 1 cut(s) 397
BspMAI CTGCAG 1 cut(s) 346
BssECI CCNNGG 2 cut(s) 316, 326
BssMI GATC 2 cut(s) 235, 414
BssNI GRCGYC 1 cut(s) 32
Bst4CI ACNGT 1 cut(s) 46
Bst6I CTCTTC 3 cut(s) 196, 201, 651
BstACI GRCGYC 1 cut(s) 32
BstBAI YACGTR 1 cut(s) 191
BstC8I GCNNGC 2 cut(s) 346, 533
BstDEI CTNAG 2 cut(s) 639, 649
BstDSI CCRYGG 1 cut(s) 326
BstKTI GATC 2 cut(s) 238, 417
BstMBI GATC 2 cut(s) 235, 414
BstMWI GCNNNNNNNGC 3 cut(s) 286, 338, 498
BstSCI CCNGG 2 cut(s) 315, 316
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 2 cut(s) 328, 622
BstV2I GAAGAC 1 cut(s) 588
Bsu15I ATCGAT 1 cut(s) 397
BsuRI GGCC 3 cut(s) 289, 321, 348
BsuTUI ATCGAT 1 cut(s) 397
BtgI CCRYGG 1 cut(s) 326
BtrI CACGTC 1 cut(s) 159
Cac8I GCNNGC 2 cut(s) 346, 533
Cfr13I GGNCC 2 cut(s) 287, 319
Cfr9I CCCGGG 1 cut(s) 316
ClaI ATCGAT 1 cut(s) 397
Csp6I GTAC 1 cut(s) 188
CviAII CATG 2 cut(s) 239, 277
CviQI GTAC 1 cut(s) 188
DdeI CTNAG 2 cut(s) 639, 649
DpnI GATC 2 cut(s) 237, 416
DpnII GATC 2 cut(s) 235, 414
Eam1104I CTCTTC 3 cut(s) 196, 201, 651
EarI CTCTTC 3 cut(s) 196, 201, 651
Eco24I GRGCYC 1 cut(s) 270
Eco88I CYCGRG 3 cut(s) 263, 316, 559
EcoT38I GRGCYC 1 cut(s) 270
FaeI CATG 2 cut(s) 242, 280
FaiI YATR 5 cut(s) 234, 240, 278, 285, 393
FaqI GGGAC 1 cut(s) 169
FatI CATG 2 cut(s) 238, 276
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 2 cut(s) 342, 636
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 2 cut(s) 342, 636
GluI GCNGC 2 cut(s) 342, 636
HaeIII GGCC 3 cut(s) 289, 321, 348
HapII CCGG 1 cut(s) 317
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 2 cut(s) 242, 280
HindIII AAGCTT 1 cut(s) 246
HinfI GANTC 6 cut(s) 77, 83, 399, 494, 584, 672
HpaII CCGG 1 cut(s) 317
HphI GGTGA 2 cut(s) 31, 118
Hpy188I TCNGA 3 cut(s) 82, 174, 652
Hpy188III TCNNGA 3 cut(s) 470, 559, 641
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 3 cut(s) 118, 467, 662
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 5 cut(s) 32, 158, 190, 372, 549
HpyCH4V TGCA 3 cut(s) 63, 344, 602
HpyF10VI GCNNNNNNNGC 3 cut(s) 286, 338, 498
HpyF3I CTNAG 2 cut(s) 639, 649
HpySE526I ACGT 5 cut(s) 32, 158, 190, 372, 549
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 2 cut(s) 242, 280
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 2 cut(s) 235, 414
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 7 cut(s) 330, 330, 483, 521, 545, 550, 626
Lsp1109I GCAGC 2 cut(s) 328, 622
MaeII ACGT 5 cut(s) 32, 158, 190, 372, 549
MaeIII GTNAC 1 cut(s) 458
MalI GATC 2 cut(s) 237, 416
MboI GATC 2 cut(s) 235, 414
MboII GAAGA 5 cut(s) 213, 218, 465, 593, 668
MhlI GDGCHC 2 cut(s) 44, 270
MluCI AATT 4 cut(s) 364, 377, 597, 615
MlyI GAGTC 3 cut(s) 86, 578, 681
MmeI TCCRAC 1 cut(s) 60
MroXI GAANNNNTTC 1 cut(s) 477
MseI TTAA 3 cut(s) 137, 614, 681
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 2 cut(s) 317, 318
MwoI GCNNNNNNNGC 3 cut(s) 286, 338, 498
NciI CCSGG 2 cut(s) 317, 318
NdeII GATC 2 cut(s) 235, 414
NlaIII CATG 2 cut(s) 242, 280
NmeAIII GCCGAG 2 cut(s) 315, 320
NmuCI GTSAC 1 cut(s) 458
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 3 cut(s) 83, 399, 494
PkrI GCNGC 2 cut(s) 343, 637
PleI GAGTC 3 cut(s) 85, 578, 680
PpsI GAGTC 3 cut(s) 85, 578, 680
Ppu21I YACGTR 1 cut(s) 191
Psp1406I AACGTT 1 cut(s) 372
PspPI GGNCC 2 cut(s) 287, 319
PstI CTGCAG 1 cut(s) 346
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
SaqAI TTAA 3 cut(s) 137, 614, 681
SatI GCNGC 2 cut(s) 342, 636
Sau3AI GATC 2 cut(s) 235, 414
Sau96I GGNCC 2 cut(s) 287, 319
SchI GAGTC 3 cut(s) 86, 578, 681
ScrFI CCNGG 2 cut(s) 317, 318
SduI GDGCHC 2 cut(s) 44, 270
SfcI CTRYAG 1 cut(s) 342
SmaI CCCGGG 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
SrfI GCCCGGGC 1 cut(s) 318
Sse9I AATT 4 cut(s) 364, 377, 597, 615
StyD4I CCNGG 2 cut(s) 315, 316
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 5 cut(s) 35, 161, 193, 375, 552
TaqI TCGA 3 cut(s) 397, 402, 573
TasI AATT 4 cut(s) 364, 377, 597, 615
TfiI GAWTC 3 cut(s) 83, 399, 494
Tru1I TTAA 3 cut(s) 137, 614, 681
Tru9I TTAA 3 cut(s) 137, 614, 681
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 2 cut(s) 341, 635
Tsp45I GTSAC 1 cut(s) 458
TspMI CCCGGG 1 cut(s) 316
XmaI CCCGGG 1 cut(s) 316
XmnI GAANNNNTTC 1 cut(s) 477
ZraI GACGTC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.