gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 280 |
| AclWI | GGATC | 1 cut(s) | 409 |
| AcsI | RAATTY | 2 cut(s) | 185, 389 |
| AfaI | GTAC | 1 cut(s) | 259 |
| AflII | CTTAAG | 1 cut(s) | 152 |
| AgsI | TTSAA | 5 cut(s) | 173, 185, 227, 238, 296 |
| AluBI | AGCT | 2 cut(s) | 381, 440 |
| AluI | AGCT | 2 cut(s) | 381, 440 |
| Alw26I | GTCTC | 2 cut(s) | 330, 418 |
| AlwI | GGATC | 1 cut(s) | 409 |
| ApoI | RAATTY | 2 cut(s) | 185, 389 |
| AsuHPI | GGTGA | 3 cut(s) | 20, 209, 485 |
| BccI | CCATC | 1 cut(s) | 418 |
| BcoDI | GTCTC | 2 cut(s) | 330, 418 |
| BfrI | CTTAAG | 1 cut(s) | 152 |
| BfuAI | ACCTGC | 1 cut(s) | 280 |
| BpuEI | CTTGAG | 2 cut(s) | 124, 356 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 377, 407 |
| BsmAI | GTCTC | 2 cut(s) | 330, 418 |
| Bsp143I | GATC | 1 cut(s) | 401 |
| BspMI | ACCTGC | 1 cut(s) | 280 |
| BspPI | GGATC | 1 cut(s) | 409 |
| BspTI | CTTAAG | 1 cut(s) | 152 |
| BssMI | GATC | 1 cut(s) | 401 |
| Bst6I | CTCTTC | 2 cut(s) | 15, 168 |
| BstAFI | CTTAAG | 1 cut(s) | 152 |
| BstC8I | GCNNGC | 1 cut(s) | 122 |
| BstDEI | CTNAG | 2 cut(s) | 273, 417 |
| BstKTI | GATC | 1 cut(s) | 404 |
| BstMAI | GTCTC | 2 cut(s) | 330, 418 |
| BstMBI | GATC | 1 cut(s) | 401 |
| BstX2I | RGATCY | 1 cut(s) | 401 |
| BstYI | RGATCY | 1 cut(s) | 401 |
| BveI | ACCTGC | 1 cut(s) | 280 |
| Cac8I | GCNNGC | 1 cut(s) | 122 |
| Csp6I | GTAC | 1 cut(s) | 258 |
| CviAII | CATG | 2 cut(s) | 443, 482 |
| CviJI | RGCY | 4 cut(s) | 305, 381, 440, 496 |
| CviKI_1 | RGCY | 4 cut(s) | 305, 381, 440, 496 |
| CviQI | GTAC | 1 cut(s) | 258 |
| DdeI | CTNAG | 2 cut(s) | 273, 417 |
| DpnI | GATC | 1 cut(s) | 403 |
| DpnII | GATC | 1 cut(s) | 401 |
| Eam1104I | CTCTTC | 2 cut(s) | 15, 168 |
| EarI | CTCTTC | 2 cut(s) | 15, 168 |
| EcoRI | GAATTC | 1 cut(s) | 185 |
| FaeI | CATG | 2 cut(s) | 446, 485 |
| FaiI | YATR | 4 cut(s) | 132, 444, 468, 483 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 365, 397 |
| FatI | CATG | 2 cut(s) | 442, 481 |
| Hin1II | CATG | 2 cut(s) | 446, 485 |
| HindIII | AAGCTT | 1 cut(s) | 379 |
| HinfI | GANTC | 1 cut(s) | 476 |
| HphI | GGTGA | 3 cut(s) | 20, 209, 485 |
| Hpy188I | TCNGA | 5 cut(s) | 58, 67, 76, 97, 406 |
| Hpy188III | TCNNGA | 1 cut(s) | 141 |
| HpyAV | CCTTC | 1 cut(s) | 449 |
| HpyCH4V | TGCA | 4 cut(s) | 120, 289, 352, 485 |
| HpyF3I | CTNAG | 2 cut(s) | 273, 417 |
| Hsp92II | CATG | 2 cut(s) | 446, 485 |
| Kzo9I | GATC | 1 cut(s) | 401 |
| LpnPI | CCDG | 2 cut(s) | 275, 338 |
| MalI | GATC | 1 cut(s) | 403 |
| MboI | GATC | 1 cut(s) | 401 |
| MboII | GAAGA | 7 cut(s) | 32, 95, 113, 185, 260, 303, 368 |
| MfeI | CAATTG | 1 cut(s) | 125 |
| MflI | RGATCY | 1 cut(s) | 401 |
| MluCI | AATT | 9 cut(s) | 52, 125, 144, 180, 185, 347, 359, 389, 429 |
| MnlI | CCTC | 4 cut(s) | 16, 55, 148, 169 |
| MseI | TTAA | 6 cut(s) | 51, 153, 300, 317, 365, 384 |
| MspCI | CTTAAG | 1 cut(s) | 152 |
| MunI | CAATTG | 1 cut(s) | 125 |
| NdeII | GATC | 1 cut(s) | 401 |
| NlaIII | CATG | 2 cut(s) | 446, 485 |
| PfeI | GAWTC | 1 cut(s) | 476 |
| PsuI | RGATCY | 1 cut(s) | 401 |
| RsaI | GTAC | 1 cut(s) | 259 |
| RsaNI | GTAC | 1 cut(s) | 258 |
| SaqAI | TTAA | 6 cut(s) | 51, 153, 300, 317, 365, 384 |
| Sau3AI | GATC | 1 cut(s) | 401 |
| SetI | ASST | 5 cut(s) | 27, 267, 294, 383, 442 |
| SmlI | CTYRAG | 3 cut(s) | 139, 152, 335 |
| SmoI | CTYRAG | 3 cut(s) | 139, 152, 335 |
| Sse9I | AATT | 9 cut(s) | 52, 125, 144, 180, 185, 347, 359, 389, 429 |
| TasI | AATT | 9 cut(s) | 52, 125, 144, 180, 185, 347, 359, 389, 429 |
| TfiI | GAWTC | 1 cut(s) | 476 |
| Tru1I | TTAA | 6 cut(s) | 51, 153, 300, 317, 365, 384 |
| Tru9I | TTAA | 6 cut(s) | 51, 153, 300, 317, 365, 384 |
| TspDTI | ATGAA | 3 cut(s) | 33, 114, 126 |
| Vha464I | CTTAAG | 1 cut(s) | 152 |
| XapI | RAATTY | 2 cut(s) | 185, 389 |