Rmu_sc0005350.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005350.1
OG0000703
Physical Location & Seq
Reverse (-)
29913 .. 30206
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005350.1_g000007.1.cds

Sequence Viewer

Length: 294 bp
atgctggagctggatgttaggggtcaacagactttaaatctggatttgttggctaaaaatgagtcattgcaggatgagttaagatcgattcaagaaaagttcacaaaatttgaggtcagctctggcgctatgtctaaattacttgggtcaggaaaattccctcatgatacttgtggactgggatacattggaaaggattccaagggtacaaagttcgtaagagcatcaagaccacttgtggataaggaagaagcttccgttgatgatgacatcacagttttaaaggaagattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.73

Weight (kDa)

4.99

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 107, 155
AfaI GTAC 1 cut(s) 208
AgsI TTSAA 1 cut(s) 92
AluBI AGCT 3 cut(s) 10, 120, 254
AluI AGCT 3 cut(s) 10, 120, 254
ApoI RAATTY 2 cut(s) 107, 155
Asp700I GAANNNNTTC 1 cut(s) 196
AspLEI GCGC 1 cut(s) 128
BciVI GTATCC 1 cut(s) 176
BfoI RGCGCY 1 cut(s) 129
BfuI GTATCC 1 cut(s) 176
BmrI ACTGGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 233
BmuI ACTGGG 1 cut(s) 188
BplI GAGNNNNNCTC 2 cut(s) 104, 136
BpmI CTGGAG 1 cut(s) 26
Bsa29I ATCGAT 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 65
BseCI ATCGAT 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 2 cut(s) 19, 79
BseMI GCAATG 1 cut(s) 65
BseNI ACTGG 1 cut(s) 183
BshVI ATCGAT 1 cut(s) 86
Bsp143I GATC 1 cut(s) 83
BspDI ATCGAT 1 cut(s) 86
BspHI TCATGA 1 cut(s) 163
BsrDI GCAATG 1 cut(s) 65
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 201
Bst4CI ACNGT 1 cut(s) 277
BstF5I GGATG 2 cut(s) 19, 79
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 1 cut(s) 86
BstMBI GATC 1 cut(s) 83
Bsu15I ATCGAT 1 cut(s) 86
BsuI GTATCC 1 cut(s) 176
BsuTUI ATCGAT 1 cut(s) 86
BtsCI GGATG 2 cut(s) 19, 79
CciI TCATGA 1 cut(s) 163
CfoI GCGC 1 cut(s) 128
ClaI ATCGAT 1 cut(s) 86
Csp6I GTAC 1 cut(s) 207
CviAII CATG 1 cut(s) 164
CviJI RGCY 4 cut(s) 10, 53, 120, 254
CviKI_1 RGCY 4 cut(s) 10, 53, 120, 254
CviQI GTAC 1 cut(s) 207
DpnI GATC 1 cut(s) 85
DpnII GATC 1 cut(s) 83
DraI TTTAAA 2 cut(s) 36, 282
Eco130I CCWWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 1 cut(s) 167
FaiI YATR 2 cut(s) 131, 165
FatI CATG 1 cut(s) 163
FokI GGATG 2 cut(s) 26, 86
GlaI GCGC 1 cut(s) 127
GsuI CTGGAG 1 cut(s) 26
HaeII RGCGCY 1 cut(s) 129
HhaI GCGC 1 cut(s) 128
Hin1II CATG 1 cut(s) 167
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 1 cut(s) 26
HindII GTYRAC 1 cut(s) 26
HindIII AAGCTT 1 cut(s) 252
HinfI GANTC 3 cut(s) 62, 88, 197
Hpy166II GTNNAC 3 cut(s) 26, 102, 176
Hpy188III TCNNGA 5 cut(s) 41, 92, 150, 164, 228
Hpy8I GTNNAC 3 cut(s) 26, 102, 176
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 1 cut(s) 70
Hsp92II CATG 1 cut(s) 167
HspAI GCGC 1 cut(s) 126
Kzo9I GATC 1 cut(s) 83
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 5 cut(s) 26, 56, 108, 135, 164
LweI GCATC 1 cut(s) 233
MalI GATC 1 cut(s) 85
MboI GATC 1 cut(s) 83
MboII GAAGA 1 cut(s) 260
MluCI AATT 3 cut(s) 107, 137, 155
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 2 cut(s) 106, 171
MroXI GAANNNNTTC 1 cut(s) 196
MseI TTAA 3 cut(s) 35, 80, 281
NdeII GATC 1 cut(s) 83
NlaIII CATG 1 cut(s) 167
PagI TCATGA 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 196
PfeI GAWTC 2 cut(s) 88, 197
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SaqAI TTAA 3 cut(s) 35, 80, 281
Sau3AI GATC 1 cut(s) 83
SchI GAGTC 1 cut(s) 71
SetI ASST 4 cut(s) 12, 117, 122, 256
SfaNI GCATC 1 cut(s) 233
Sse9I AATT 3 cut(s) 107, 137, 155
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 1 cut(s) 86
TasI AATT 3 cut(s) 107, 137, 155
TfiI GAWTC 2 cut(s) 88, 197
Tru1I TTAA 3 cut(s) 35, 80, 281
Tru9I TTAA 3 cut(s) 35, 80, 281
TspGWI ACGGA 1 cut(s) 247
XapI RAATTY 2 cut(s) 107, 155
XmnI GAANNNNTTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.