gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 684 |
| AccI | GTMKAC | 2 cut(s) | 11, 179 |
| AciI | CCGC | 1 cut(s) | 719 |
| AclWI | GGATC | 1 cut(s) | 576 |
| AcoI | YGGCCR | 1 cut(s) | 241 |
| AcsI | RAATTY | 3 cut(s) | 662, 839, 1034 |
| AcuI | CTGAAG | 1 cut(s) | 467 |
| AfaI | GTAC | 4 cut(s) | 86, 198, 296, 429 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 206, 643, 778 |
| AgsI | TTSAA | 8 cut(s) | 487, 494, 713, 742, 875, 975, 989, 1071 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 713, 745 |
| AluBI | AGCT | 1 cut(s) | 750 |
| AluI | AGCT | 1 cut(s) | 750 |
| Alw21I | GWGCWC | 1 cut(s) | 752 |
| Alw26I | GTCTC | 1 cut(s) | 28 |
| AlwI | GGATC | 1 cut(s) | 576 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 392 |
| AoxI | GGCC | 1 cut(s) | 241 |
| ApeKI | GCWGC | 3 cut(s) | 101, 104, 452 |
| ApoI | RAATTY | 3 cut(s) | 662, 839, 1034 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 257, 289 |
| AsuHPI | GGTGA | 1 cut(s) | 833 |
| AsuII | TTCGAA | 1 cut(s) | 934 |
| BalI | TGGCCA | 1 cut(s) | 243 |
| BanII | GRGCYC | 1 cut(s) | 752 |
| BbsI | GAAGAC | 2 cut(s) | 357, 729 |
| Bbv12I | GWGCWC | 1 cut(s) | 752 |
| BbvI | GCAGC | 3 cut(s) | 88, 91, 439 |
| BclI | TGATCA | 1 cut(s) | 70 |
| BcoDI | GTCTC | 1 cut(s) | 28 |
| BfaI | CTAG | 2 cut(s) | 149, 927 |
| BfmI | CTRYAG | 1 cut(s) | 453 |
| BglII | AGATCT | 1 cut(s) | 800 |
| BisI | GCNGC | 3 cut(s) | 102, 105, 453 |
| BlsI | GCNGC | 3 cut(s) | 103, 106, 454 |
| BmsI | GCATC | 1 cut(s) | 1087 |
| BpiI | GAAGAC | 2 cut(s) | 357, 729 |
| Bpu14I | TTCGAA | 1 cut(s) | 934 |
| BpuEI | CTTGAG | 2 cut(s) | 554, 563 |
| BsaJI | CCNNGG | 1 cut(s) | 942 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 206, 643, 778 |
| Bse1I | ACTGG | 2 cut(s) | 34, 465 |
| Bse3DI | GCAATG | 1 cut(s) | 246 |
| BseDI | CCNNGG | 1 cut(s) | 942 |
| BseGI | GGATG | 1 cut(s) | 71 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 206, 643, 778 |
| BseMI | GCAATG | 1 cut(s) | 246 |
| BseNI | ACTGG | 2 cut(s) | 34, 465 |
| BseRI | GAGGAG | 2 cut(s) | 578, 931 |
| BseXI | GCAGC | 3 cut(s) | 88, 91, 439 |
| BsgI | GTGCAG | 1 cut(s) | 90 |
| BshFI | GGCC | 1 cut(s) | 243 |
| BsiHKAI | GWGCWC | 1 cut(s) | 752 |
| BslFI | GGGAC | 2 cut(s) | 172, 811 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 206, 643, 778 |
| BsmAI | GTCTC | 1 cut(s) | 28 |
| BsmFI | GGGAC | 2 cut(s) | 172, 811 |
| BsmI | GAATGC | 1 cut(s) | 507 |
| BsnI | GGCC | 1 cut(s) | 243 |
| Bsp119I | TTCGAA | 1 cut(s) | 934 |
| Bsp1286I | GDGCHC | 1 cut(s) | 752 |
| Bsp143I | GATC | 3 cut(s) | 70, 568, 800 |
| BspACI | CCGC | 1 cut(s) | 719 |
| BspANI | GGCC | 1 cut(s) | 243 |
| BspMAI | CTGCAG | 1 cut(s) | 457 |
| BspPI | GGATC | 1 cut(s) | 576 |
| BspT104I | TTCGAA | 1 cut(s) | 934 |
| BsrDI | GCAATG | 1 cut(s) | 246 |
| BsrI | ACTGG | 2 cut(s) | 34, 465 |
| BssECI | CCNNGG | 1 cut(s) | 942 |
| BssMI | GATC | 3 cut(s) | 70, 568, 800 |
| BssNAI | GTATAC | 1 cut(s) | 180 |
| Bst1107I | GTATAC | 1 cut(s) | 180 |
| Bst4CI | ACNGT | 5 cut(s) | 172, 186, 260, 299, 985 |
| Bst6I | CTCTTC | 1 cut(s) | 636 |
| BstBI | TTCGAA | 1 cut(s) | 934 |
| BstDEI | CTNAG | 1 cut(s) | 773 |
| BstF5I | GGATG | 1 cut(s) | 71 |
| BstKTI | GATC | 3 cut(s) | 73, 571, 803 |
| BstMAI | GTCTC | 1 cut(s) | 28 |
| BstMBI | GATC | 3 cut(s) | 70, 568, 800 |
| BstSFI | CTRYAG | 1 cut(s) | 453 |
| BstV1I | GCAGC | 3 cut(s) | 88, 91, 439 |
| BstV2I | GAAGAC | 2 cut(s) | 357, 729 |
| BstX2I | RGATCY | 1 cut(s) | 800 |
| BstYI | RGATCY | 1 cut(s) | 800 |
| BstZ17I | GTATAC | 1 cut(s) | 180 |
| BsuRI | GGCC | 1 cut(s) | 243 |
| BtsCI | GGATG | 1 cut(s) | 71 |
| BtsIMutI | CAGTG | 1 cut(s) | 182 |
| CaiI | CAGNNNCTG | 1 cut(s) | 392 |
| Csp6I | GTAC | 4 cut(s) | 85, 197, 295, 428 |
| CviAII | CATG | 3 cut(s) | 74, 306, 577 |
| CviJI | RGCY | 7 cut(s) | 101, 237, 243, 452, 482, 750, 813 |
| CviKI_1 | RGCY | 7 cut(s) | 101, 237, 243, 452, 482, 750, 813 |
| CviQI | GTAC | 4 cut(s) | 85, 197, 295, 428 |
| DdeI | CTNAG | 1 cut(s) | 773 |
| DpnI | GATC | 3 cut(s) | 72, 570, 802 |
| DpnII | GATC | 3 cut(s) | 70, 568, 800 |
| DraI | TTTAAA | 1 cut(s) | 1081 |
| EaeI | YGGCCR | 1 cut(s) | 241 |
| Eam1104I | CTCTTC | 1 cut(s) | 636 |
| EarI | CTCTTC | 1 cut(s) | 636 |
| EciI | GGCGGA | 1 cut(s) | 734 |
| Ecl136II | GAGCTC | 1 cut(s) | 750 |
| Eco24I | GRGCYC | 1 cut(s) | 752 |
| Eco53kI | GAGCTC | 1 cut(s) | 750 |
| Eco57I | CTGAAG | 1 cut(s) | 467 |
| EcoICRI | GAGCTC | 1 cut(s) | 750 |
| EcoT38I | GRGCYC | 1 cut(s) | 752 |
| FaeI | CATG | 3 cut(s) | 77, 309, 580 |
| FaqI | GGGAC | 2 cut(s) | 172, 811 |
| FatI | CATG | 3 cut(s) | 73, 305, 576 |
| FbaI | TGATCA | 1 cut(s) | 70 |
| FblI | GTMKAC | 2 cut(s) | 11, 179 |
| Fnu4HI | GCNGC | 3 cut(s) | 102, 105, 453 |
| FokI | GGATG | 1 cut(s) | 78 |
| FriOI | GRGCYC | 1 cut(s) | 752 |
| Fsp4HI | GCNGC | 3 cut(s) | 102, 105, 453 |
| FspBI | CTAG | 2 cut(s) | 149, 927 |
| GluI | GCNGC | 3 cut(s) | 102, 105, 453 |
| HaeIII | GGCC | 1 cut(s) | 243 |
| Hin1II | CATG | 3 cut(s) | 77, 309, 580 |
| HincII | GTYRAC | 3 cut(s) | 12, 142, 981 |
| HindII | GTYRAC | 3 cut(s) | 12, 142, 981 |
| HinfI | GANTC | 8 cut(s) | 329, 389, 625, 704, 824, 875, 947, 971 |
| HpaI | GTTAAC | 1 cut(s) | 981 |
| HphI | GGTGA | 1 cut(s) | 833 |
| Hpy166II | GTNNAC | 4 cut(s) | 12, 142, 180, 981 |
| Hpy188I | TCNGA | 9 cut(s) | 277, 388, 394, 447, 469, 630, 766, 880, 946 |
| Hpy188III | TCNNGA | 4 cut(s) | 377, 710, 780, 1122 |
| Hpy8I | GTNNAC | 4 cut(s) | 12, 142, 180, 981 |
| Hpy99I | CGWCG | 1 cut(s) | 13 |
| HpyAV | CCTTC | 4 cut(s) | 433, 442, 623, 908 |
| HpyCH4III | ACNGT | 5 cut(s) | 172, 186, 260, 299, 985 |
| HpyCH4V | TGCA | 8 cut(s) | 107, 130, 263, 356, 455, 620, 673, 1042 |
| HpyF3I | CTNAG | 1 cut(s) | 773 |
| Hsp92II | CATG | 3 cut(s) | 77, 309, 580 |
| Ksp22I | TGATCA | 1 cut(s) | 70 |
| KspAI | GTTAAC | 1 cut(s) | 981 |
| Kzo9I | GATC | 3 cut(s) | 70, 568, 800 |
| LpnPI | CCDG | 7 cut(s) | 47, 267, 446, 686, 789, 804, 1107 |
| Lsp1109I | GCAGC | 3 cut(s) | 88, 91, 439 |
| LweI | GCATC | 1 cut(s) | 1087 |
| MaeI | CTAG | 2 cut(s) | 149, 927 |
| MalI | GATC | 3 cut(s) | 72, 570, 802 |
| MboI | GATC | 3 cut(s) | 70, 568, 800 |
| MboII | GAAGA | 8 cut(s) | 332, 335, 357, 422, 524, 599, 653, 734 |
| MflI | RGATCY | 1 cut(s) | 800 |
| MhlI | GDGCHC | 1 cut(s) | 752 |
| MlsI | TGGCCA | 1 cut(s) | 243 |
| MluCI | AATT | 8 cut(s) | 58, 662, 695, 839, 921, 996, 1016, 1034 |
| MluNI | TGGCCA | 1 cut(s) | 243 |
| MlyI | GAGTC | 1 cut(s) | 833 |
| Mox20I | TGGCCA | 1 cut(s) | 243 |
| MscI | TGGCCA | 1 cut(s) | 243 |
| MseI | TTAA | 5 cut(s) | 548, 792, 980, 1014, 1080 |
| MslI | CAYNNNNRTG | 1 cut(s) | 78 |
| Msp20I | TGGCCA | 1 cut(s) | 243 |
| Mva1269I | GAATGC | 1 cut(s) | 507 |
| NdeII | GATC | 3 cut(s) | 70, 568, 800 |
| NlaIII | CATG | 3 cut(s) | 77, 309, 580 |
| NspV | TTCGAA | 1 cut(s) | 934 |
| PctI | GAATGC | 1 cut(s) | 507 |
| PfeI | GAWTC | 7 cut(s) | 329, 389, 625, 704, 875, 947, 971 |
| PkrI | GCNGC | 3 cut(s) | 103, 106, 454 |
| PleI | GAGTC | 1 cut(s) | 832 |
| PpsI | GAGTC | 1 cut(s) | 832 |
| PsiI | TTATAA | 1 cut(s) | 684 |
| Psp124BI | GAGCTC | 1 cut(s) | 752 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 411, 443, 838, 870 |
| PstI | CTGCAG | 1 cut(s) | 457 |
| PstNI | CAGNNNCTG | 1 cut(s) | 392 |
| PsuI | RGATCY | 1 cut(s) | 800 |
| RsaI | GTAC | 4 cut(s) | 86, 198, 296, 429 |
| RsaNI | GTAC | 4 cut(s) | 85, 197, 295, 428 |
| RseI | CAYNNNNRTG | 1 cut(s) | 78 |
| SacI | GAGCTC | 1 cut(s) | 752 |
| SalI | GTCGAC | 1 cut(s) | 10 |
| SaqAI | TTAA | 5 cut(s) | 548, 792, 980, 1014, 1080 |
| SatI | GCNGC | 3 cut(s) | 102, 105, 453 |
| Sau3AI | GATC | 3 cut(s) | 70, 568, 800 |
| SchI | GAGTC | 1 cut(s) | 833 |
| SduI | GDGCHC | 1 cut(s) | 752 |
| SetI | ASST | 6 cut(s) | 211, 217, 444, 648, 752, 941 |
| SfaNI | GCATC | 1 cut(s) | 1087 |
| SfcI | CTRYAG | 1 cut(s) | 453 |
| SfuI | TTCGAA | 1 cut(s) | 934 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 78 |
| SmlI | CTYRAG | 2 cut(s) | 533, 542 |
| SmoI | CTYRAG | 2 cut(s) | 533, 542 |
| Sse9I | AATT | 8 cut(s) | 58, 662, 695, 839, 921, 996, 1016, 1034 |
| SsiI | CCGC | 1 cut(s) | 719 |
| SspMI | CTAG | 2 cut(s) | 149, 927 |
| SstI | GAGCTC | 1 cut(s) | 752 |
| TaaI | ACNGT | 5 cut(s) | 172, 186, 260, 299, 985 |
| TaqI | TCGA | 3 cut(s) | 11, 335, 934 |
| TasI | AATT | 8 cut(s) | 58, 662, 695, 839, 921, 996, 1016, 1034 |
| TfiI | GAWTC | 7 cut(s) | 329, 389, 625, 704, 875, 947, 971 |
| Tru1I | TTAA | 5 cut(s) | 548, 792, 980, 1014, 1080 |
| Tru9I | TTAA | 5 cut(s) | 548, 792, 980, 1014, 1080 |
| TscAI | CASTG | 1 cut(s) | 189 |
| TseI | GCWGC | 3 cut(s) | 101, 104, 452 |
| TspDTI | ATGAA | 6 cut(s) | 240, 432, 666, 881, 998, 1008 |
| TspRI | CASTG | 1 cut(s) | 189 |
| XapI | RAATTY | 3 cut(s) | 662, 839, 1034 |
| XmiI | GTMKAC | 2 cut(s) | 11, 179 |
| XspI | CTAG | 2 cut(s) | 149, 927 |