transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 18 - 191 | 4.9e-22 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 603 - 677 | 2.1e-19 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 709 - 779 | 3e-15 | GAG-pre-integrase domain |
| rve | PF00665 | 793 - 897 | 2.1e-14 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1491, 2975 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2242 |
| AccI | GTMKAC | 2 cut(s) | 1523, 2372 |
| AciI | CCGC | 2 cut(s) | 1887, 2792 |
| AclWI | GGATC | 7 cut(s) | 401, 1148, 1291, 1537, 2106, 2412, 2995 |
| AcuI | CTGAAG | 1 cut(s) | 2208 |
| AcyI | GRCGYC | 1 cut(s) | 2215 |
| AfaI | GTAC | 2 cut(s) | 1061, 2450 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 955, 1374, 2242, 3010 |
| AflII | CTTAAG | 1 cut(s) | 881 |
| AjnI | CCWGG | 2 cut(s) | 1951, 2836 |
| AleI | CACNNNNGTG | 3 cut(s) | 150, 1461, 2489 |
| Alw21I | GWGCWC | 3 cut(s) | 451, 1023, 1829 |
| Alw26I | GTCTC | 2 cut(s) | 696, 891 |
| AlwI | GGATC | 7 cut(s) | 401, 1148, 1291, 1537, 2106, 2412, 2995 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2843 |
| AoxI | GGCC | 1 cut(s) | 1376 |
| ApeKI | GCWGC | 4 cut(s) | 182, 857, 2319, 2910 |
| AseI | ATTAAT | 2 cut(s) | 1203, 2361 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 249, 715, 1419 |
| AspS9I | GGNCC | 2 cut(s) | 1511, 2414 |
| AsuHPI | GGTGA | 8 cut(s) | 128, 292, 416, 1856, 1916, 2503, 3025, 3070 |
| AvaII | GGWCC | 2 cut(s) | 1511, 2414 |
| BanII | GRGCYC | 1 cut(s) | 451 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1786, 1818 |
| BbsI | GAAGAC | 1 cut(s) | 621 |
| Bbv12I | GWGCWC | 3 cut(s) | 451, 1023, 1829 |
| BbvCI | CCTCAGC | 1 cut(s) | 2182 |
| BbvI | GCAGC | 4 cut(s) | 169, 844, 2306, 2922 |
| BccI | CCATC | 3 cut(s) | 1901, 2309, 2822 |
| BciT130I | CCWGG | 2 cut(s) | 1953, 2838 |
| BciVI | GTATCC | 1 cut(s) | 1967 |
| BclI | TGATCA | 3 cut(s) | 142, 2602, 3060 |
| BcoDI | GTCTC | 2 cut(s) | 696, 891 |
| BfmI | CTRYAG | 1 cut(s) | 2926 |
| BfrI | CTTAAG | 1 cut(s) | 881 |
| BfuI | GTATCC | 1 cut(s) | 1967 |
| BglII | AGATCT | 1 cut(s) | 499 |
| BisI | GCNGC | 4 cut(s) | 183, 858, 2320, 2911 |
| BlpI | GCTNAGC | 2 cut(s) | 132, 471 |
| BlsI | GCNGC | 4 cut(s) | 184, 859, 2321, 2912 |
| Bme1390I | CCNGG | 2 cut(s) | 1953, 2838 |
| Bme18I | GGWCC | 2 cut(s) | 1511, 2414 |
| BmgT120I | GGNCC | 2 cut(s) | 1511, 2414 |
| BmiI | GGNNCC | 1 cut(s) | 1512 |
| BmrFI | CCNGG | 2 cut(s) | 1953, 2838 |
| BmrI | ACTGGG | 1 cut(s) | 3064 |
| BmsI | GCATC | 3 cut(s) | 2506, 2570, 2947 |
| BmuI | ACTGGG | 1 cut(s) | 3064 |
| BpiI | GAAGAC | 1 cut(s) | 621 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1022, 1054 |
| BpmI | CTGGAG | 1 cut(s) | 1377 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2182, 2434 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 132, 471 |
| BpuEI | CTTGAG | 4 cut(s) | 6, 480, 1239, 2521 |
| BsaBI | GATNNNNATC | 1 cut(s) | 630 |
| BsaHI | GRCGYC | 1 cut(s) | 2215 |
| BsaI | GGTCTC | 1 cut(s) | 696 |
| BsaJI | CCNNGG | 1 cut(s) | 1487 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 553, 583, 910, 940 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 955, 1374, 2242, 3010 |
| Bse1I | ACTGG | 3 cut(s) | 1531, 1859, 3059 |
| Bse3DI | GCAATG | 2 cut(s) | 1752, 2806 |
| Bse8I | GATNNNNATC | 1 cut(s) | 630 |
| BseBI | CCWGG | 2 cut(s) | 1953, 2838 |
| BseDI | CCNNGG | 1 cut(s) | 1487 |
| BseGI | GGATG | 4 cut(s) | 346, 967, 1430, 1666 |
| BseJI | GATNNNNATC | 1 cut(s) | 630 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 955, 1374, 2242, 3010 |
| BseMI | GCAATG | 2 cut(s) | 1752, 2806 |
| BseMII | CTCAG | 7 cut(s) | 123, 1011, 1017, 2051, 2174, 2196, 3060 |
| BseNI | ACTGG | 3 cut(s) | 1531, 1859, 3059 |
| BseRI | GAGGAG | 5 cut(s) | 971, 1043, 1357, 2170, 2679 |
| BseXI | GCAGC | 4 cut(s) | 169, 844, 2306, 2922 |
| BshFI | GGCC | 1 cut(s) | 1378 |
| BsiHKAI | GWGCWC | 3 cut(s) | 451, 1023, 1829 |
| BslFI | GGGAC | 1 cut(s) | 2755 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 955, 1374, 2242, 3010 |
| BsmAI | GTCTC | 2 cut(s) | 696, 891 |
| BsmFI | GGGAC | 1 cut(s) | 2755 |
| BsnI | GGCC | 1 cut(s) | 1378 |
| Bso31I | GGTCTC | 1 cut(s) | 696 |
| Bsp1286I | GDGCHC | 3 cut(s) | 451, 1023, 1829 |
| Bsp1407I | TGTACA | 1 cut(s) | 1059 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 132, 471 |
| BspACI | CCGC | 2 cut(s) | 1887, 2792 |
| BspANI | GGCC | 1 cut(s) | 1378 |
| BspCNI | CTCAG | 7 cut(s) | 124, 1010, 1018, 2052, 2173, 2195, 3061 |
| BspHI | TCATGA | 2 cut(s) | 262, 1534 |
| BspLI | GGNNCC | 1 cut(s) | 1512 |
| BspPI | GGATC | 7 cut(s) | 401, 1148, 1291, 1537, 2106, 2412, 2995 |
| BspQI | GCTCTTC | 2 cut(s) | 456, 654 |
| BspTI | CTTAAG | 1 cut(s) | 881 |
| BspTNI | GGTCTC | 1 cut(s) | 696 |
| BsrDI | GCAATG | 2 cut(s) | 1752, 2806 |
| BsrGI | TGTACA | 1 cut(s) | 1059 |
| BsrI | ACTGG | 3 cut(s) | 1531, 1859, 3059 |
| BssECI | CCNNGG | 1 cut(s) | 1487 |
| BssNI | GRCGYC | 1 cut(s) | 2215 |
| BssT1I | CCWWGG | 1 cut(s) | 1487 |
| Bst2UI | CCWGG | 2 cut(s) | 1953, 2838 |
| Bst4CI | ACNGT | 7 cut(s) | 127, 663, 1059, 1420, 1563, 1639, 2746 |
| Bst6I | CTCTTC | 6 cut(s) | 456, 654, 703, 948, 1789, 2034 |
| BstACI | GRCGYC | 1 cut(s) | 2215 |
| BstAFI | CTTAAG | 1 cut(s) | 881 |
| BstAUI | TGTACA | 1 cut(s) | 1059 |
| BstC8I | GCNNGC | 1 cut(s) | 2324 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1372 |
| BstF5I | GGATG | 4 cut(s) | 346, 967, 1430, 1666 |
| BstMAI | GTCTC | 2 cut(s) | 696, 891 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 866, 974, 1778, 2332, 2768 |
| BstNI | CCWGG | 2 cut(s) | 1953, 2838 |
| BstNSI | RCATGY | 2 cut(s) | 1764, 2455 |
| BstSCI | CCNGG | 2 cut(s) | 1951, 2836 |
| BstSFI | CTRYAG | 1 cut(s) | 2926 |
| BstV1I | GCAGC | 4 cut(s) | 169, 844, 2306, 2922 |
| BstV2I | GAAGAC | 1 cut(s) | 621 |
| BstX2I | RGATCY | 5 cut(s) | 499, 1283, 1529, 2404, 3000 |
| BstYI | RGATCY | 5 cut(s) | 499, 1283, 1529, 2404, 3000 |
| BsuI | GTATCC | 1 cut(s) | 1967 |
| BsuRI | GGCC | 1 cut(s) | 1378 |
| BtsCI | GGATG | 4 cut(s) | 346, 967, 1430, 1666 |
| Cac8I | GCNNGC | 1 cut(s) | 2324 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2843 |
| CciI | TCATGA | 2 cut(s) | 262, 1534 |
| Cfr13I | GGNCC | 2 cut(s) | 1511, 2414 |
| CseI | GACGC | 1 cut(s) | 2223 |
| Csp6I | GTAC | 2 cut(s) | 1060, 2449 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1908, 1943 |
| CviQI | GTAC | 2 cut(s) | 1060, 2449 |
| DraI | TTTAAA | 3 cut(s) | 907, 1968, 2556 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1491, 2975 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1491, 2975 |
| Eam1104I | CTCTTC | 6 cut(s) | 456, 654, 703, 948, 1789, 2034 |
| EarI | CTCTTC | 6 cut(s) | 456, 654, 703, 948, 1789, 2034 |
| Ecl136II | GAGCTC | 1 cut(s) | 449 |
| Eco130I | CCWWGG | 1 cut(s) | 1487 |
| Eco24I | GRGCYC | 1 cut(s) | 451 |
| Eco31I | GGTCTC | 1 cut(s) | 696 |
| Eco47I | GGWCC | 2 cut(s) | 1511, 2414 |
| Eco53kI | GAGCTC | 1 cut(s) | 449 |
| Eco57I | CTGAAG | 1 cut(s) | 2208 |
| EcoICRI | GAGCTC | 1 cut(s) | 449 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1372 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1511 |
| EcoRII | CCWGG | 2 cut(s) | 1951, 2836 |
| EcoT14I | CCWWGG | 1 cut(s) | 1487 |
| EcoT22I | ATGCAT | 3 cut(s) | 1195, 2400, 2585 |
| EcoT38I | GRGCYC | 1 cut(s) | 451 |
| ErhI | CCWWGG | 1 cut(s) | 1487 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1989, 2021 |
| FaqI | GGGAC | 1 cut(s) | 2755 |
| FauNDI | CATATG | 1 cut(s) | 2400 |
| FbaI | TGATCA | 3 cut(s) | 142, 2602, 3060 |
| FblI | GTMKAC | 2 cut(s) | 1523, 2372 |
| Fnu4HI | GCNGC | 4 cut(s) | 183, 858, 2320, 2911 |
| FokI | GGATG | 4 cut(s) | 353, 974, 1417, 1653 |
| FriOI | GRGCYC | 1 cut(s) | 451 |
| Fsp4HI | GCNGC | 4 cut(s) | 183, 858, 2320, 2911 |
| GluI | GCNGC | 4 cut(s) | 183, 858, 2320, 2911 |
| GsuI | CTGGAG | 1 cut(s) | 1377 |
| HaeIII | GGCC | 1 cut(s) | 1378 |
| HgaI | GACGC | 1 cut(s) | 2223 |
| Hin1I | GRCGYC | 1 cut(s) | 2215 |
| HindIII | AAGCTT | 4 cut(s) | 234, 2324, 2431, 2536 |
| HphI | GGTGA | 8 cut(s) | 128, 292, 416, 1856, 1916, 2503, 3025, 3070 |
| Hpy166II | GTNNAC | 6 cut(s) | 123, 1524, 2105, 2230, 2373, 2484 |
| Hpy8I | GTNNAC | 6 cut(s) | 123, 1524, 2105, 2230, 2373, 2484 |
| HpyAV | CCTTC | 5 cut(s) | 630, 1590, 1982, 2258, 3002 |
| HpyCH4III | ACNGT | 7 cut(s) | 127, 663, 1059, 1420, 1563, 1639, 2746 |
| HpyCH4IV | ACGT | 3 cut(s) | 1214, 2275, 2777 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 866, 974, 1778, 2332, 2768 |
| HpySE526I | ACGT | 3 cut(s) | 1214, 2275, 2777 |
| Hsp92I | GRCGYC | 1 cut(s) | 2215 |
| Ksp22I | TGATCA | 3 cut(s) | 142, 2602, 3060 |
| LguI | GCTCTTC | 2 cut(s) | 456, 654 |
| LmnI | GCTCC | 3 cut(s) | 1370, 1954, 2683 |
| Lsp1109I | GCAGC | 4 cut(s) | 169, 844, 2306, 2922 |
| LweI | GCATC | 3 cut(s) | 2506, 2570, 2947 |
| MaeII | ACGT | 3 cut(s) | 1214, 2275, 2777 |
| MaeIII | GTNAC | 8 cut(s) | 269, 379, 1454, 1894, 1942, 2918, 2966, 2987 |
| MfeI | CAATTG | 3 cut(s) | 585, 1278, 2021 |
| MflI | RGATCY | 5 cut(s) | 499, 1283, 1529, 2404, 3000 |
| MhlI | GDGCHC | 3 cut(s) | 451, 1023, 1829 |
| MlyI | GAGTC | 8 cut(s) | 560, 1001, 1494, 1986, 2026, 2832, 2985, 3015 |
| MmeI | TCCRAC | 5 cut(s) | 38, 171, 248, 969, 2392 |
| Mph1103I | ATGCAT | 3 cut(s) | 1195, 2400, 2585 |
| MroXI | GAANNNNTTC | 3 cut(s) | 249, 715, 1419 |
| MslI | CAYNNNNRTG | 3 cut(s) | 150, 1461, 2489 |
| MspA1I | CMGCKG | 2 cut(s) | 1887, 2186 |
| MspCI | CTTAAG | 1 cut(s) | 881 |
| MspR9I | CCNGG | 2 cut(s) | 1953, 2838 |
| MunI | CAATTG | 3 cut(s) | 585, 1278, 2021 |
| MvaI | CCWGG | 2 cut(s) | 1953, 2838 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 866, 974, 1778, 2332, 2768 |
| NdeI | CATATG | 1 cut(s) | 2400 |
| NlaIV | GGNNCC | 1 cut(s) | 1512 |
| NmuCI | GTSAC | 3 cut(s) | 1454, 1894, 2966 |
| NsiI | ATGCAT | 3 cut(s) | 1195, 2400, 2585 |
| NspI | RCATGY | 2 cut(s) | 1764, 2455 |
| OliI | CACNNNNGTG | 3 cut(s) | 150, 1461, 2489 |
| PagI | TCATGA | 2 cut(s) | 262, 1534 |
| PciSI | GCTCTTC | 2 cut(s) | 456, 654 |
| PdmI | GAANNNNTTC | 3 cut(s) | 249, 715, 1419 |
| PflFI | GACNNNGTC | 1 cut(s) | 2243 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2242 |
| PkrI | GCNGC | 4 cut(s) | 184, 859, 2321, 2912 |
| PleI | GAGTC | 8 cut(s) | 559, 1000, 1494, 1986, 2025, 2831, 2984, 3015 |
| PpsI | GAGTC | 8 cut(s) | 559, 1000, 1494, 1986, 2025, 2831, 2984, 3015 |
| PpuMI | RGGWCCY | 1 cut(s) | 1511 |
| PshBI | ATTAAT | 2 cut(s) | 1203, 2361 |
| Psp124BI | GAGCTC | 1 cut(s) | 451 |
| Psp5II | RGGWCCY | 1 cut(s) | 1511 |
| Psp6I | CCWGG | 2 cut(s) | 1951, 2836 |
| PspGI | CCWGG | 2 cut(s) | 1951, 2836 |
| PspN4I | GGNNCC | 1 cut(s) | 1512 |
| PspPI | GGNCC | 2 cut(s) | 1511, 2414 |
| PspPPI | RGGWCCY | 1 cut(s) | 1511 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2843 |
| PsuI | RGATCY | 5 cut(s) | 499, 1283, 1529, 2404, 3000 |
| PsyI | GACNNNGTC | 1 cut(s) | 2243 |
| PvuII | CAGCTG | 1 cut(s) | 2186 |
| RsaI | GTAC | 2 cut(s) | 1061, 2450 |
| RsaNI | GTAC | 2 cut(s) | 1060, 2449 |
| RseI | CAYNNNNRTG | 3 cut(s) | 150, 1461, 2489 |
| SacI | GAGCTC | 1 cut(s) | 451 |
| SapI | GCTCTTC | 2 cut(s) | 456, 654 |
| SatI | GCNGC | 4 cut(s) | 183, 858, 2320, 2911 |
| Sau96I | GGNCC | 2 cut(s) | 1511, 2414 |
| SchI | GAGTC | 8 cut(s) | 560, 1001, 1494, 1986, 2026, 2832, 2985, 3015 |
| ScrFI | CCNGG | 2 cut(s) | 1953, 2838 |
| SduI | GDGCHC | 3 cut(s) | 451, 1023, 1829 |
| SfaNI | GCATC | 3 cut(s) | 2506, 2570, 2947 |
| SfcI | CTRYAG | 1 cut(s) | 2926 |
| SinI | GGWCC | 2 cut(s) | 1511, 2414 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 150, 1461, 2489 |
| SmlI | CTYRAG | 5 cut(s) | 21, 495, 881, 1254, 2500 |
| SmoI | CTYRAG | 5 cut(s) | 21, 495, 881, 1254, 2500 |
| SsiI | CCGC | 2 cut(s) | 1887, 2792 |
| SspI | AATATT | 1 cut(s) | 2567 |
| SstI | GAGCTC | 1 cut(s) | 451 |
| StyD4I | CCNGG | 2 cut(s) | 1951, 2836 |
| StyI | CCWWGG | 1 cut(s) | 1487 |
| TaaI | ACNGT | 7 cut(s) | 127, 663, 1059, 1420, 1563, 1639, 2746 |
| TaiI | ACGT | 3 cut(s) | 1217, 2278, 2780 |
| TaqI | TCGA | 3 cut(s) | 445, 1498, 2466 |
| TatI | WGTACW | 2 cut(s) | 1059, 2448 |
| TseFI | GTSAC | 3 cut(s) | 1454, 1894, 2966 |
| TseI | GCWGC | 4 cut(s) | 182, 857, 2319, 2910 |
| Tsp45I | GTSAC | 3 cut(s) | 1454, 1894, 2966 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2243 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2242 |
| Vha464I | CTTAAG | 1 cut(s) | 881 |
| VpaK11BI | GGWCC | 2 cut(s) | 1511, 2414 |
| VspI | ATTAAT | 2 cut(s) | 1203, 2361 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1372 |
| XbaI | TCTAGA | 3 cut(s) | 634, 707, 1790 |
| XceI | RCATGY | 2 cut(s) | 1764, 2455 |
| XmiI | GTMKAC | 2 cut(s) | 1523, 2372 |
| XmnI | GAANNNNTTC | 3 cut(s) | 249, 715, 1419 |
| Zsp2I | ATGCAT | 3 cut(s) | 1195, 2400, 2585 |