transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 48 - 176 | 2.2e-20 | gag-polypeptide of LTR copia-type |
| Pol_BBD | PF22936 | 630 - 703 | 2.8e-21 | Pol polyprotein, beta-barrel domain |
| SH3_retrovirus | PF25597 | 815 - 858 | 3.6e-12 | Retroviral polymerase SH3-like domain |
| RVT_2 | PF07727 | 990 - 1233 | 1.1e-75 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 2216, 3941 |
| AccI | GTMKAC | 3 cut(s) | 146, 3098, 3796 |
| AciI | CCGC | 1 cut(s) | 4088 |
| AclI | AACGTT | 1 cut(s) | 1487 |
| AclWI | GGATC | 8 cut(s) | 12, 368, 1017, 1732, 2637, 2681, 2736, 3716 |
| AcsI | RAATTY | 8 cut(s) | 404, 626, 671, 1231, 1753, 2192, 3438, 3908 |
| AcuI | CTGAAG | 5 cut(s) | 248, 657, 1020, 1398, 2724 |
| AcyI | GRCGYC | 1 cut(s) | 1156 |
| AfaI | GTAC | 9 cut(s) | 1171, 1892, 2239, 2519, 2637, 2697, 3901, 4117, 4314 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1575 |
| AflII | CTTAAG | 1 cut(s) | 3317 |
| AflIII | ACRYGT | 2 cut(s) | 1964, 2403 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 919 |
| AjnI | CCWGG | 3 cut(s) | 1572, 2032, 4032 |
| AleI | CACNNNNGTG | 2 cut(s) | 1518, 3527 |
| Alw21I | GWGCWC | 2 cut(s) | 3701, 3832 |
| Alw26I | GTCTC | 8 cut(s) | 1696, 2666, 2748, 2863, 3122, 3590, 3898, 3926 |
| AlwI | GGATC | 8 cut(s) | 12, 368, 1017, 1732, 2637, 2681, 2736, 3716 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2420, 3677 |
| AoxI | GGCC | 1 cut(s) | 891 |
| ApeKI | GCWGC | 4 cut(s) | 848, 968, 2789, 4100 |
| ApoI | RAATTY | 8 cut(s) | 404, 626, 671, 1231, 1753, 2192, 3438, 3908 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3470, 3502 |
| AseI | ATTAAT | 2 cut(s) | 2850, 2931 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 3159, 3518 |
| AspA2I | CCTAGG | 3 cut(s) | 367, 1544, 3350 |
| AspLEI | GCGC | 1 cut(s) | 3879 |
| AspS9I | GGNCC | 3 cut(s) | 211, 414, 460 |
| AsuC2I | CCSGG | 1 cut(s) | 3140 |
| AsuHPI | GGTGA | 6 cut(s) | 383, 1043, 1937, 2666, 2696, 3661 |
| AsuII | TTCGAA | 1 cut(s) | 1823 |
| AvaII | GGWCC | 3 cut(s) | 211, 414, 460 |
| AvrII | CCTAGG | 3 cut(s) | 367, 1544, 3350 |
| AxyI | CCTNAGG | 1 cut(s) | 410 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3495, 3528 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4099, 4131 |
| Bbv12I | GWGCWC | 2 cut(s) | 3701, 3832 |
| BbvI | GCAGC | 4 cut(s) | 860, 955, 2801, 4112 |
| BccI | CCATC | 9 cut(s) | 47, 1010, 1445, 1982, 2156, 2318, 3526, 3658, 4211 |
| BceAI | ACGGC | 1 cut(s) | 165 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3939, 3973 |
| BciT130I | CCWGG | 3 cut(s) | 1574, 2034, 4034 |
| BclI | TGATCA | 2 cut(s) | 1033, 2088 |
| BcnI | CCSGG | 1 cut(s) | 3140 |
| BcoDI | GTCTC | 8 cut(s) | 1696, 2666, 2748, 2863, 3122, 3590, 3898, 3926 |
| BfmI | CTRYAG | 3 cut(s) | 1407, 3678, 4389 |
| BfrI | CTTAAG | 1 cut(s) | 3317 |
| BfuAI | ACCTGC | 2 cut(s) | 2216, 3941 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 3353 |
| BisI | GCNGC | 4 cut(s) | 849, 969, 2790, 4101 |
| BlnI | CCTAGG | 3 cut(s) | 367, 1544, 3350 |
| BlpI | GCTNAGC | 2 cut(s) | 1662, 3386 |
| BlsI | GCNGC | 4 cut(s) | 850, 970, 2791, 4102 |
| Bme1390I | CCNGG | 4 cut(s) | 1574, 2034, 3140, 4034 |
| Bme18I | GGWCC | 3 cut(s) | 211, 414, 460 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 919 |
| BmgT120I | GGNCC | 3 cut(s) | 211, 414, 460 |
| BmiI | GGNNCC | 1 cut(s) | 212 |
| BmrFI | CCNGG | 4 cut(s) | 1574, 2034, 3140, 4034 |
| BmrI | ACTGGG | 1 cut(s) | 1189 |
| BmsI | GCATC | 8 cut(s) | 75, 691, 985, 2046, 2264, 2446, 3888, 4131 |
| BmuI | ACTGGG | 1 cut(s) | 1189 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 911, 943, 2180, 2212 |
| BpmI | CTGGAG | 2 cut(s) | 2412, 2676 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1662, 3386 |
| Bpu14I | TTCGAA | 1 cut(s) | 1823 |
| BpuEI | CTTGAG | 5 cut(s) | 973, 2861, 3075, 3447, 3884 |
| BpuMI | CCSGG | 1 cut(s) | 3140 |
| BsaHI | GRCGYC | 1 cut(s) | 1156 |
| BsaI | GGTCTC | 1 cut(s) | 3590 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1575 |
| Bse1I | ACTGG | 4 cut(s) | 142, 1184, 2693, 4223 |
| Bse21I | CCTNAGG | 1 cut(s) | 410 |
| Bse3DI | GCAATG | 3 cut(s) | 552, 2943, 3013 |
| BseBI | CCWGG | 3 cut(s) | 1574, 2034, 4034 |
| BseGI | GGATG | 8 cut(s) | 586, 979, 2037, 3220, 3481, 3669, 3991, 4137 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1575 |
| BseMI | GCAATG | 3 cut(s) | 552, 2943, 3013 |
| BseNI | ACTGG | 4 cut(s) | 142, 1184, 2693, 4223 |
| BseRI | GAGGAG | 1 cut(s) | 703 |
| BseXI | GCAGC | 4 cut(s) | 860, 955, 2801, 4112 |
| BseYI | CCCAGC | 1 cut(s) | 1151 |
| BsgI | GTGCAG | 2 cut(s) | 1087, 2289 |
| BshFI | GGCC | 1 cut(s) | 893 |
| BsiHKAI | GWGCWC | 2 cut(s) | 3701, 3832 |
| BsiSI | CCGG | 1 cut(s) | 3140 |
| BslFI | GGGAC | 4 cut(s) | 224, 1397, 3421, 3668 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1575 |
| BsmAI | GTCTC | 8 cut(s) | 1696, 2666, 2748, 2863, 3122, 3590, 3898, 3926 |
| BsmFI | GGGAC | 4 cut(s) | 224, 1397, 3421, 3668 |
| BsmI | GAATGC | 2 cut(s) | 100, 2077 |
| BsnI | GGCC | 1 cut(s) | 893 |
| Bso31I | GGTCTC | 1 cut(s) | 3590 |
| Bsp119I | TTCGAA | 1 cut(s) | 1823 |
| Bsp1286I | GDGCHC | 2 cut(s) | 3701, 3832 |
| Bsp1407I | TGTACA | 2 cut(s) | 2517, 4115 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1662, 3386 |
| Bsp19I | CCATGG | 1 cut(s) | 297 |
| BspACI | CCGC | 1 cut(s) | 4088 |
| BspANI | GGCC | 1 cut(s) | 893 |
| BspLI | GGNNCC | 1 cut(s) | 212 |
| BspMAI | CTGCAG | 2 cut(s) | 1411, 3682 |
| BspMI | ACCTGC | 2 cut(s) | 2216, 3941 |
| BspPI | GGATC | 8 cut(s) | 12, 368, 1017, 1732, 2637, 2681, 2736, 3716 |
| BspT104I | TTCGAA | 1 cut(s) | 1823 |
| BspTI | CTTAAG | 1 cut(s) | 3317 |
| BspTNI | GGTCTC | 1 cut(s) | 3590 |
| BsrDI | GCAATG | 3 cut(s) | 552, 2943, 3013 |
| BsrGI | TGTACA | 2 cut(s) | 2517, 4115 |
| BsrI | ACTGG | 4 cut(s) | 142, 1184, 2693, 4223 |
| BssNAI | GTATAC | 2 cut(s) | 147, 3099 |
| BssNI | GRCGYC | 1 cut(s) | 1156 |
| BssT1I | CCWWGG | 8 cut(s) | 297, 367, 1041, 1544, 2814, 3350, 3849, 4165 |
| Bst1107I | GTATAC | 2 cut(s) | 147, 3099 |
| Bst2UI | CCWGG | 3 cut(s) | 1574, 2034, 4034 |
| Bst4CI | ACNGT | 6 cut(s) | 663, 1520, 1570, 1861, 2450, 3412 |
| Bst6I | CTCTTC | 2 cut(s) | 450, 2203 |
| BstACI | GRCGYC | 1 cut(s) | 1156 |
| BstAFI | CTTAAG | 1 cut(s) | 3317 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2261 |
| BstAUI | TGTACA | 2 cut(s) | 2517, 4115 |
| BstBI | TTCGAA | 1 cut(s) | 1823 |
| BstC8I | GCNNGC | 6 cut(s) | 90, 1411, 1796, 2434, 3174, 4176 |
| BstDSI | CCRYGG | 1 cut(s) | 297 |
| BstF5I | GGATG | 8 cut(s) | 586, 979, 2037, 3220, 3481, 3669, 3991, 4137 |
| BstHHI | GCGC | 1 cut(s) | 3879 |
| BstMAI | GTCTC | 8 cut(s) | 1696, 2666, 2748, 2863, 3122, 3590, 3898, 3926 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 203, 965, 1877, 2034, 2261, 2947, 3143, 3353 |
| BstNI | CCWGG | 3 cut(s) | 1574, 2034, 4034 |
| BstNSI | RCATGY | 3 cut(s) | 1968, 2407, 3559 |
| BstSCI | CCNGG | 4 cut(s) | 1572, 2032, 3138, 4032 |
| BstSFI | CTRYAG | 3 cut(s) | 1407, 3678, 4389 |
| BstV1I | GCAGC | 4 cut(s) | 860, 955, 2801, 4112 |
| BstX2I | RGATCY | 2 cut(s) | 1009, 3721 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 298 |
| BstYI | RGATCY | 2 cut(s) | 1009, 3721 |
| BstZ17I | GTATAC | 2 cut(s) | 147, 3099 |
| Bsu36I | CCTNAGG | 1 cut(s) | 410 |
| BsuRI | GGCC | 1 cut(s) | 893 |
| BtgI | CCRYGG | 1 cut(s) | 297 |
| BtsCI | GGATG | 8 cut(s) | 586, 979, 2037, 3220, 3481, 3669, 3991, 4137 |
| BtsI | GCAGTG | 2 cut(s) | 2427, 4077 |
| BtsIMutI | CAGTG | 9 cut(s) | 77, 276, 1470, 2098, 2427, 2592, 3820, 4077, 4317 |
| BveI | ACCTGC | 2 cut(s) | 2216, 3941 |
| Cac8I | GCNNGC | 6 cut(s) | 90, 1411, 1796, 2434, 3174, 4176 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2420, 3677 |
| CfoI | GCGC | 1 cut(s) | 3879 |
| Cfr13I | GGNCC | 3 cut(s) | 211, 414, 460 |
| CseI | GACGC | 2 cut(s) | 1145, 4362 |
| CsiI | ACCWGGT | 1 cut(s) | 4032 |
| Csp6I | GTAC | 9 cut(s) | 1170, 1891, 2238, 2518, 2636, 2696, 3900, 4116, 4313 |
| CviQI | GTAC | 9 cut(s) | 1170, 1891, 2238, 2518, 2636, 2696, 3900, 4116, 4313 |
| DraI | TTTAAA | 2 cut(s) | 2248, 3234 |
| DriI | GACNNNNNGTC | 1 cut(s) | 919 |
| Eam1104I | CTCTTC | 2 cut(s) | 450, 2203 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 919 |
| EarI | CTCTTC | 2 cut(s) | 450, 2203 |
| Eco130I | CCWWGG | 8 cut(s) | 297, 367, 1041, 1544, 2814, 3350, 3849, 4165 |
| Eco31I | GGTCTC | 1 cut(s) | 3590 |
| Eco32I | GATATC | 1 cut(s) | 4262 |
| Eco47I | GGWCC | 3 cut(s) | 211, 414, 460 |
| Eco57I | CTGAAG | 5 cut(s) | 248, 657, 1020, 1398, 2724 |
| Eco81I | CCTNAGG | 1 cut(s) | 410 |
| EcoO109I | RGGNCCY | 2 cut(s) | 211, 414 |
| EcoRI | GAATTC | 1 cut(s) | 3438 |
| EcoRII | CCWGG | 3 cut(s) | 1572, 2032, 4032 |
| EcoRV | GATATC | 1 cut(s) | 4262 |
| EcoT14I | CCWWGG | 8 cut(s) | 297, 367, 1041, 1544, 2814, 3350, 3849, 4165 |
| EcoT22I | ATGCAT | 3 cut(s) | 2257, 2295, 2943 |
| ErhI | CCWWGG | 8 cut(s) | 297, 367, 1041, 1544, 2814, 3350, 3849, 4165 |
| FaqI | GGGAC | 4 cut(s) | 224, 1397, 3421, 3668 |
| FauNDI | CATATG | 1 cut(s) | 1917 |
| FbaI | TGATCA | 2 cut(s) | 1033, 2088 |
| FblI | GTMKAC | 3 cut(s) | 146, 3098, 3796 |
| Fnu4HI | GCNGC | 4 cut(s) | 849, 969, 2790, 4101 |
| FokI | GGATG | 8 cut(s) | 593, 966, 2024, 3227, 3488, 3676, 3998, 4144 |
| Fsp4HI | GCNGC | 4 cut(s) | 849, 969, 2790, 4101 |
| GlaI | GCGC | 1 cut(s) | 3878 |
| GluI | GCNGC | 4 cut(s) | 849, 969, 2790, 4101 |
| GsaI | CCCAGC | 1 cut(s) | 1155 |
| GsuI | CTGGAG | 2 cut(s) | 2412, 2676 |
| HaeIII | GGCC | 1 cut(s) | 893 |
| HapII | CCGG | 1 cut(s) | 3140 |
| HgaI | GACGC | 2 cut(s) | 1145, 4362 |
| HhaI | GCGC | 1 cut(s) | 3879 |
| Hin1I | GRCGYC | 1 cut(s) | 1156 |
| Hin6I | GCGC | 1 cut(s) | 3877 |
| HinP1I | GCGC | 1 cut(s) | 3877 |
| HincII | GTYRAC | 4 cut(s) | 1258, 1651, 2425, 3742 |
| HindII | GTYRAC | 4 cut(s) | 1258, 1651, 2425, 3742 |
| HindIII | AAGCTT | 3 cut(s) | 1664, 3324, 4172 |
| HpaI | GTTAAC | 2 cut(s) | 1258, 1651 |
| HpaII | CCGG | 1 cut(s) | 3140 |
| HphI | GGTGA | 6 cut(s) | 383, 1043, 1937, 2666, 2696, 3661 |
| Hpy99I | CGWCG | 1 cut(s) | 3996 |
| HpyCH4III | ACNGT | 6 cut(s) | 663, 1520, 1570, 1861, 2450, 3412 |
| HpyCH4IV | ACGT | 5 cut(s) | 175, 1487, 3902, 3994, 4095 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 203, 965, 1877, 2034, 2261, 2947, 3143, 3353 |
| HpySE526I | ACGT | 5 cut(s) | 175, 1487, 3902, 3994, 4095 |
| Hsp92I | GRCGYC | 1 cut(s) | 1156 |
| HspAI | GCGC | 1 cut(s) | 3877 |
| Ksp22I | TGATCA | 2 cut(s) | 1033, 2088 |
| KspAI | GTTAAC | 2 cut(s) | 1258, 1651 |
| Lsp1109I | GCAGC | 4 cut(s) | 860, 955, 2801, 4112 |
| LweI | GCATC | 8 cut(s) | 75, 691, 985, 2046, 2264, 2446, 3888, 4131 |
| MabI | ACCWGGT | 1 cut(s) | 4032 |
| MaeII | ACGT | 5 cut(s) | 175, 1487, 3902, 3994, 4095 |
| MfeI | CAATTG | 2 cut(s) | 1773, 3599 |
| MflI | RGATCY | 2 cut(s) | 1009, 3721 |
| MhlI | GDGCHC | 2 cut(s) | 3701, 3832 |
| Mph1103I | ATGCAT | 3 cut(s) | 2257, 2295, 2943 |
| MroXI | GAANNNNTTC | 2 cut(s) | 3159, 3518 |
| MslI | CAYNNNNRTG | 5 cut(s) | 296, 344, 1518, 3527, 3692 |
| MspA1I | CMGCKG | 2 cut(s) | 851, 4103 |
| MspCI | CTTAAG | 1 cut(s) | 3317 |
| MspI | CCGG | 1 cut(s) | 3140 |
| MspR9I | CCNGG | 4 cut(s) | 1574, 2034, 3140, 4034 |
| MunI | CAATTG | 2 cut(s) | 1773, 3599 |
| Mva1269I | GAATGC | 2 cut(s) | 100, 2077 |
| MvaI | CCWGG | 3 cut(s) | 1574, 2034, 4034 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 203, 965, 1877, 2034, 2261, 2947, 3143, 3353 |
| NciI | CCSGG | 1 cut(s) | 3140 |
| NcoI | CCATGG | 1 cut(s) | 297 |
| NdeI | CATATG | 1 cut(s) | 1917 |
| NlaIV | GGNNCC | 1 cut(s) | 212 |
| NsiI | ATGCAT | 3 cut(s) | 2257, 2295, 2943 |
| NspI | RCATGY | 3 cut(s) | 1968, 2407, 3559 |
| NspV | TTCGAA | 1 cut(s) | 1823 |
| OliI | CACNNNNGTG | 2 cut(s) | 1518, 3527 |
| PciI | ACATGT | 2 cut(s) | 1964, 2403 |
| PctI | GAATGC | 2 cut(s) | 100, 2077 |
| PdmI | GAANNNNTTC | 2 cut(s) | 3159, 3518 |
| PkrI | GCNGC | 4 cut(s) | 850, 970, 2791, 4102 |
| PpuMI | RGGWCCY | 2 cut(s) | 211, 414 |
| PscI | ACATGT | 2 cut(s) | 1964, 2403 |
| PshBI | ATTAAT | 2 cut(s) | 2850, 2931 |
| Psp1406I | AACGTT | 1 cut(s) | 1487 |
| Psp5II | RGGWCCY | 2 cut(s) | 211, 414 |
| Psp6I | CCWGG | 3 cut(s) | 1572, 2032, 4032 |
| PspFI | CCCAGC | 1 cut(s) | 1151 |
| PspGI | CCWGG | 3 cut(s) | 1572, 2032, 4032 |
| PspN4I | GGNNCC | 1 cut(s) | 212 |
| PspPI | GGNCC | 3 cut(s) | 211, 414, 460 |
| PspPPI | RGGWCCY | 2 cut(s) | 211, 414 |
| PstI | CTGCAG | 2 cut(s) | 1411, 3682 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2420, 3677 |
| PsuI | RGATCY | 2 cut(s) | 1009, 3721 |
| PvuII | CAGCTG | 2 cut(s) | 851, 4103 |
| RsaI | GTAC | 9 cut(s) | 1171, 1892, 2239, 2519, 2637, 2697, 3901, 4117, 4314 |
| RsaNI | GTAC | 9 cut(s) | 1170, 1891, 2238, 2518, 2636, 2696, 3900, 4116, 4313 |
| RseI | CAYNNNNRTG | 5 cut(s) | 296, 344, 1518, 3527, 3692 |
| SatI | GCNGC | 4 cut(s) | 849, 969, 2790, 4101 |
| Sau96I | GGNCC | 3 cut(s) | 211, 414, 460 |
| ScrFI | CCNGG | 4 cut(s) | 1574, 2034, 3140, 4034 |
| SduI | GDGCHC | 2 cut(s) | 3701, 3832 |
| SexAI | ACCWGGT | 1 cut(s) | 4032 |
| SfaNI | GCATC | 8 cut(s) | 75, 691, 985, 2046, 2264, 2446, 3888, 4131 |
| SfcI | CTRYAG | 3 cut(s) | 1407, 3678, 4389 |
| SfuI | TTCGAA | 1 cut(s) | 1823 |
| SinI | GGWCC | 3 cut(s) | 211, 414, 460 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 296, 344, 1518, 3527, 3692 |
| SmlI | CTYRAG | 6 cut(s) | 988, 2840, 3090, 3317, 3462, 3863 |
| SmoI | CTYRAG | 6 cut(s) | 988, 2840, 3090, 3317, 3462, 3863 |
| SsiI | CCGC | 1 cut(s) | 4088 |
| SspI | AATATT | 4 cut(s) | 565, 1240, 2300, 3486 |
| StyD4I | CCNGG | 4 cut(s) | 1572, 2032, 3138, 4032 |
| StyI | CCWWGG | 8 cut(s) | 297, 367, 1041, 1544, 2814, 3350, 3849, 4165 |
| TaaI | ACNGT | 6 cut(s) | 663, 1520, 1570, 1861, 2450, 3412 |
| TaiI | ACGT | 5 cut(s) | 178, 1490, 3905, 3997, 4098 |
| TaqII | GACCGA | 2 cut(s) | 827, 870 |
| TatI | WGTACW | 4 cut(s) | 1169, 2517, 2695, 4115 |
| TscAI | CASTG | 9 cut(s) | 77, 283, 1477, 2098, 2434, 2592, 3820, 4084, 4324 |
| TseI | GCWGC | 4 cut(s) | 848, 968, 2789, 4100 |
| TspGWI | ACGGA | 1 cut(s) | 2781 |
| TspRI | CASTG | 9 cut(s) | 77, 283, 1477, 2098, 2434, 2592, 3820, 4084, 4324 |
| Vha464I | CTTAAG | 1 cut(s) | 3317 |
| VpaK11BI | GGWCC | 3 cut(s) | 211, 414, 460 |
| VspI | ATTAAT | 2 cut(s) | 2850, 2931 |
| XapI | RAATTY | 8 cut(s) | 404, 626, 671, 1231, 1753, 2192, 3438, 3908 |
| XbaI | TCTAGA | 4 cut(s) | 469, 656, 1285, 1910 |
| XceI | RCATGY | 3 cut(s) | 1968, 2407, 3559 |
| XmaJI | CCTAGG | 3 cut(s) | 367, 1544, 3350 |
| XmiI | GTMKAC | 3 cut(s) | 146, 3098, 3796 |
| XmnI | GAANNNNTTC | 2 cut(s) | 3159, 3518 |
| Zsp2I | ATGCAT | 3 cut(s) | 2257, 2295, 2943 |