gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 224, 634 |
| AclWI | GGATC | 2 cut(s) | 382, 731 |
| AcsI | RAATTY | 3 cut(s) | 319, 362, 541 |
| AfaI | GTAC | 2 cut(s) | 895, 1051 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 216, 217, 633 |
| AflIII | ACRYGT | 2 cut(s) | 66, 294 |
| AleI | CACNNNNGTG | 1 cut(s) | 629 |
| AluBI | AGCT | 8 cut(s) | 334, 412, 519, 612, 640, 791, 835, 1076 |
| AluI | AGCT | 8 cut(s) | 334, 412, 519, 612, 640, 791, 835, 1076 |
| Alw21I | GWGCWC | 1 cut(s) | 1025 |
| AlwI | GGATC | 2 cut(s) | 382, 731 |
| ApeKI | GCWGC | 3 cut(s) | 637, 784, 1076 |
| ApoI | RAATTY | 3 cut(s) | 319, 362, 541 |
| AseI | ATTAAT | 1 cut(s) | 36 |
| AspS9I | GGNCC | 1 cut(s) | 977 |
| AsuHPI | GGTGA | 4 cut(s) | 41, 278, 895, 959 |
| AvaII | GGWCC | 1 cut(s) | 977 |
| Bbv12I | GWGCWC | 1 cut(s) | 1025 |
| BbvI | GCAGC | 3 cut(s) | 649, 771, 1063 |
| BfaI | CTAG | 2 cut(s) | 915, 1047 |
| BglII | AGATCT | 1 cut(s) | 256 |
| BisI | GCNGC | 4 cut(s) | 635, 638, 785, 1077 |
| BlsI | GCNGC | 4 cut(s) | 636, 639, 786, 1078 |
| Bme18I | GGWCC | 1 cut(s) | 977 |
| BmgT120I | GGNCC | 1 cut(s) | 977 |
| BmsI | GCATC | 2 cut(s) | 211, 1017 |
| Bpu10I | CCTNAGC | 1 cut(s) | 641 |
| BsaJI | CCNNGG | 1 cut(s) | 531 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 100, 130 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 216, 217, 633 |
| Bse1I | ACTGG | 2 cut(s) | 949, 1069 |
| BseDI | CCNNGG | 1 cut(s) | 531 |
| BseGI | GGATG | 2 cut(s) | 226, 997 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 216, 217, 633 |
| BseMII | CTCAG | 3 cut(s) | 578, 655, 783 |
| BseNI | ACTGG | 2 cut(s) | 949, 1069 |
| BseXI | GCAGC | 3 cut(s) | 649, 771, 1063 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1025 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 216, 217, 633 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1025 |
| Bsp143I | GATC | 3 cut(s) | 256, 374, 736 |
| BspACI | CCGC | 2 cut(s) | 224, 634 |
| BspCNI | CTCAG | 3 cut(s) | 577, 654, 784 |
| BspPI | GGATC | 2 cut(s) | 382, 731 |
| BspQI | GCTCTTC | 1 cut(s) | 162 |
| BsrI | ACTGG | 2 cut(s) | 949, 1069 |
| BssECI | CCNNGG | 1 cut(s) | 531 |
| BssMI | GATC | 3 cut(s) | 256, 374, 736 |
| BssT1I | CCWWGG | 1 cut(s) | 531 |
| Bst4CI | ACNGT | 1 cut(s) | 354 |
| Bst6I | CTCTTC | 1 cut(s) | 162 |
| BstC8I | GCNNGC | 2 cut(s) | 327, 789 |
| BstDEI | CTNAG | 5 cut(s) | 564, 641, 767, 792, 1001 |
| BstF5I | GGATG | 2 cut(s) | 226, 997 |
| BstKTI | GATC | 3 cut(s) | 259, 377, 739 |
| BstMBI | GATC | 3 cut(s) | 256, 374, 736 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 331 |
| BstNSI | RCATGY | 2 cut(s) | 70, 329 |
| BstV1I | GCAGC | 3 cut(s) | 649, 771, 1063 |
| BstX2I | RGATCY | 3 cut(s) | 256, 374, 736 |
| BstYI | RGATCY | 3 cut(s) | 256, 374, 736 |
| BtsCI | GGATG | 2 cut(s) | 226, 997 |
| BtsIMutI | CAGTG | 1 cut(s) | 507 |
| Cac8I | GCNNGC | 2 cut(s) | 327, 789 |
| Cfr13I | GGNCC | 1 cut(s) | 977 |
| Csp6I | GTAC | 2 cut(s) | 894, 1050 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 409, 444, 969, 1004 |
| CviAII | CATG | 4 cut(s) | 67, 80, 326, 1098 |
| CviQI | GTAC | 2 cut(s) | 894, 1050 |
| DdeI | CTNAG | 5 cut(s) | 564, 641, 767, 792, 1001 |
| DpnI | GATC | 3 cut(s) | 258, 376, 738 |
| DpnII | GATC | 3 cut(s) | 256, 374, 736 |
| DraI | TTTAAA | 3 cut(s) | 45, 291, 391 |
| Eam1104I | CTCTTC | 1 cut(s) | 162 |
| EarI | CTCTTC | 1 cut(s) | 162 |
| Eco130I | CCWWGG | 1 cut(s) | 531 |
| Eco47I | GGWCC | 1 cut(s) | 977 |
| EcoT14I | CCWWGG | 1 cut(s) | 531 |
| ErhI | CCWWGG | 1 cut(s) | 531 |
| FaeI | CATG | 4 cut(s) | 70, 83, 329, 1101 |
| FatI | CATG | 4 cut(s) | 66, 79, 325, 1097 |
| Fnu4HI | GCNGC | 4 cut(s) | 635, 638, 785, 1077 |
| FokI | GGATG | 2 cut(s) | 233, 1004 |
| Fsp4HI | GCNGC | 4 cut(s) | 635, 638, 785, 1077 |
| FspBI | CTAG | 2 cut(s) | 915, 1047 |
| GluI | GCNGC | 4 cut(s) | 635, 638, 785, 1077 |
| Hin1II | CATG | 4 cut(s) | 70, 83, 329, 1101 |
| HindIII | AAGCTT | 1 cut(s) | 833 |
| HinfI | GANTC | 5 cut(s) | 119, 500, 512, 763, 995 |
| HphI | GGTGA | 4 cut(s) | 41, 278, 895, 959 |
| Hpy188I | TCNGA | 7 cut(s) | 22, 124, 310, 379, 567, 580, 616 |
| Hpy188III | TCNNGA | 4 cut(s) | 94, 161, 260, 929 |
| Hpy99I | CGWCG | 1 cut(s) | 826 |
| HpyAV | CCTTC | 3 cut(s) | 257, 452, 486 |
| HpyCH4III | ACNGT | 1 cut(s) | 354 |
| HpyCH4IV | ACGT | 1 cut(s) | 294 |
| HpyCH4V | TGCA | 6 cut(s) | 193, 325, 329, 622, 787, 830 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 331 |
| HpyF3I | CTNAG | 5 cut(s) | 564, 641, 767, 792, 1001 |
| HpySE526I | ACGT | 1 cut(s) | 294 |
| Hsp92II | CATG | 4 cut(s) | 70, 83, 329, 1101 |
| Kzo9I | GATC | 3 cut(s) | 256, 374, 736 |
| LguI | GCTCTTC | 1 cut(s) | 162 |
| LmnI | GCTCC | 1 cut(s) | 1073 |
| LpnPI | CCDG | 6 cut(s) | 174, 465, 628, 865, 930, 1050 |
| Lsp1109I | GCAGC | 3 cut(s) | 649, 771, 1063 |
| LweI | GCATC | 2 cut(s) | 211, 1017 |
| MaeI | CTAG | 2 cut(s) | 915, 1047 |
| MaeII | ACGT | 1 cut(s) | 294 |
| MaeIII | GTNAC | 1 cut(s) | 297 |
| MalI | GATC | 3 cut(s) | 258, 376, 738 |
| MboI | GATC | 3 cut(s) | 256, 374, 736 |
| MboII | GAAGA | 1 cut(s) | 149 |
| MflI | RGATCY | 3 cut(s) | 256, 374, 736 |
| MhlI | GDGCHC | 1 cut(s) | 1025 |
| MluCI | AATT | 8 cut(s) | 200, 236, 312, 319, 362, 541, 695, 901 |
| MlyI | GAGTC | 2 cut(s) | 128, 494 |
| MmeI | TCCRAC | 1 cut(s) | 797 |
| MnlI | CCTC | 6 cut(s) | 262, 316, 436, 637, 667, 979 |
| MseI | TTAA | 6 cut(s) | 36, 44, 72, 290, 315, 390 |
| MslI | CAYNNNNRTG | 3 cut(s) | 629, 687, 1016 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 331 |
| NdeII | GATC | 3 cut(s) | 256, 374, 736 |
| NlaIII | CATG | 4 cut(s) | 70, 83, 329, 1101 |
| NspI | RCATGY | 2 cut(s) | 70, 329 |
| OliI | CACNNNNGTG | 1 cut(s) | 629 |
| PaeI | GCATGC | 1 cut(s) | 329 |
| PciI | ACATGT | 1 cut(s) | 66 |
| PciSI | GCTCTTC | 1 cut(s) | 162 |
| PfeI | GAWTC | 3 cut(s) | 512, 763, 995 |
| PflFI | GACNNNGTC | 1 cut(s) | 981 |
| PkrI | GCNGC | 4 cut(s) | 636, 639, 786, 1078 |
| PleI | GAGTC | 2 cut(s) | 127, 494 |
| PpsI | GAGTC | 2 cut(s) | 127, 494 |
| PscI | ACATGT | 1 cut(s) | 66 |
| PshBI | ATTAAT | 1 cut(s) | 36 |
| PspPI | GGNCC | 1 cut(s) | 977 |
| PsuI | RGATCY | 3 cut(s) | 256, 374, 736 |
| PsyI | GACNNNGTC | 1 cut(s) | 981 |
| RsaI | GTAC | 2 cut(s) | 895, 1051 |
| RsaNI | GTAC | 2 cut(s) | 894, 1050 |
| RseI | CAYNNNNRTG | 3 cut(s) | 629, 687, 1016 |
| SapI | GCTCTTC | 1 cut(s) | 162 |
| SaqAI | TTAA | 6 cut(s) | 36, 44, 72, 290, 315, 390 |
| SatI | GCNGC | 4 cut(s) | 635, 638, 785, 1077 |
| Sau3AI | GATC | 3 cut(s) | 256, 374, 736 |
| Sau96I | GGNCC | 1 cut(s) | 977 |
| SchI | GAGTC | 2 cut(s) | 128, 494 |
| SduI | GDGCHC | 1 cut(s) | 1025 |
| SfaNI | GCATC | 2 cut(s) | 211, 1017 |
| SinI | GGWCC | 1 cut(s) | 977 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 629, 687, 1016 |
| SphI | GCATGC | 1 cut(s) | 329 |
| Sse9I | AATT | 8 cut(s) | 200, 236, 312, 319, 362, 541, 695, 901 |
| SsiI | CCGC | 2 cut(s) | 224, 634 |
| SspI | AATATT | 1 cut(s) | 151 |
| SspMI | CTAG | 2 cut(s) | 915, 1047 |
| StyI | CCWWGG | 1 cut(s) | 531 |
| TaaI | ACNGT | 1 cut(s) | 354 |
| TaiI | ACGT | 1 cut(s) | 297 |
| TaqI | TCGA | 2 cut(s) | 11, 930 |
| TasI | AATT | 8 cut(s) | 200, 236, 312, 319, 362, 541, 695, 901 |
| TauI | GCSGC | 1 cut(s) | 637 |
| TfiI | GAWTC | 3 cut(s) | 512, 763, 995 |
| Tru1I | TTAA | 6 cut(s) | 36, 44, 72, 290, 315, 390 |
| Tru9I | TTAA | 6 cut(s) | 36, 44, 72, 290, 315, 390 |
| TscAI | CASTG | 1 cut(s) | 514 |
| TseI | GCWGC | 3 cut(s) | 637, 784, 1076 |
| TspDTI | ATGAA | 4 cut(s) | 213, 578, 611, 1008 |
| TspGWI | ACGGA | 1 cut(s) | 512 |
| TspRI | CASTG | 1 cut(s) | 514 |
| Tth111I | GACNNNGTC | 1 cut(s) | 981 |
| VpaK11BI | GGWCC | 1 cut(s) | 977 |
| VspI | ATTAAT | 1 cut(s) | 36 |
| XapI | RAATTY | 3 cut(s) | 319, 362, 541 |
| XceI | RCATGY | 2 cut(s) | 70, 329 |
| XspI | CTAG | 2 cut(s) | 915, 1047 |