FvH4_3g03630
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000389
Physical Location & Seq
Forward (+)
2041916 .. 2043479
1564 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03630.t1

Sequence Viewer

Length: 669 bp
ATGAATAAGATAAAGATCGAGAAGATAGAGAGCCTGCCGGCGAGGCAGGTGACGTTTTCGAAGAGGAGAAAAGGGCTGTTCAAGAAAGCCGGAGAGTTATCAGTTCTTTGCGACGCTAAGGTTGCTGTCATTGTCTTCTCTTCTACTGACAAGCTCTATGAGTTATCCAGATCCAGCACGAAGGATATTATTGCAAGGTACAAACAGTGCACTAAAGATGATGGAGTAGAGGAGTCAGCTGATGAGTGCATGATGAGGTTGAATGTGGAGCTTGCGGAAAAGATCCGCGAGCTAAGGCATATGGAGGGGAAGGATCTAGAAGAGCTGGATATAGATGAGTTGCAGAGATTGGAGAAAATGATTGAAGGAGGACTTAGCCGAGTACTTGAAACTAAGGATCAGAGGATTAGGAGTCAGATTCGGGCACTTGAAACAAAAGGAGCAGAGTTGGCAGAAGAAAACAACCTGTTAATAAGGCAGAGCTTAAGAACGCTGCTATCTATGGAGTCGTCGGGGATCTCAACTGATGATGATGAACAAGGTATGGCATCAGAATCTTGCACAATTTCCACTAGCTGCTTCACTACTGGCTCTTCCACTTCGTCCACAGATGACTCCTCCTCCTCTGAGAACACCATGTCTCTCAAACTCGGGCTTCCTCGGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

223

Amino Acids

24.8

Weight (kDa)

5.16

Isoelectric Point (pI)

63.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 8 - 54 3.6e-24 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 81 - 160 1.9e-13 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 37
Acc36I ACCTGC 1 cut(s) 37
AccII CGCG 1 cut(s) 288
AciI CCGC 2 cut(s) 275, 286
AclWI GGATC 5 cut(s) 165, 277, 321, 405, 524
AfaI GTAC 2 cut(s) 200, 384
AflII CTTAAG 1 cut(s) 484
AgsI TTSAA 5 cut(s) 82, 262, 365, 389, 431
AluBI AGCT 8 cut(s) 154, 239, 271, 292, 325, 483, 576, 666
AluI AGCT 8 cut(s) 154, 239, 271, 292, 325, 483, 576, 666
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 645
Alw44I GTGCAC 1 cut(s) 208
AlwI GGATC 5 cut(s) 165, 277, 321, 405, 524
Ama87I CYCGRG 1 cut(s) 650
ApaLI GTGCAC 1 cut(s) 208
ApeKI GCWGC 2 cut(s) 493, 576
AsuHPI GGTGA 1 cut(s) 61
AsuII TTCGAA 1 cut(s) 59
AvaI CYCGRG 1 cut(s) 650
BaeGI GKGCMC 2 cut(s) 212, 427
BbsI GAAGAC 1 cut(s) 127
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 2 cut(s) 480, 563
BccI CCATC 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 645
BfaI CTAG 2 cut(s) 317, 573
BfrI CTTAAG 1 cut(s) 484
BfuAI ACCTGC 1 cut(s) 37
BglI GCCNNNNNGGC 1 cut(s) 43
BisI GCNGC 2 cut(s) 494, 577
BlsI GCNGC 2 cut(s) 495, 578
BmcAI AGTACT 1 cut(s) 384
BmeT110I CYCGRG 1 cut(s) 650
BmsI GCATC 1 cut(s) 557
BpiI GAAGAC 1 cut(s) 127
Bpu10I CCTNAGC 2 cut(s) 117, 293
Bpu14I TTCGAA 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 659
BsaXI ACNNNNNCTCC 2 cut(s) 605, 635
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 592
Bse8I GATNNNNATC 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 659
BseJI GATNNNNATC 1 cut(s) 14
BseMII CTCAG 1 cut(s) 618
BseNI ACTGG 1 cut(s) 592
BseRI GAGGAG 5 cut(s) 79, 245, 607, 610, 613
BseSI GKGCMC 2 cut(s) 212, 427
BseXI GCAGC 2 cut(s) 480, 563
Bsh1236I CGCG 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 212
BsiHKCI CYCGRG 1 cut(s) 650
BsiSI CCGG 2 cut(s) 38, 90
BsmAI GTCTC 1 cut(s) 645
BsoBI CYCGRG 1 cut(s) 650
Bsp119I TTCGAA 1 cut(s) 59
Bsp1286I GDGCHC 2 cut(s) 212, 427
Bsp143I GATC 6 cut(s) 15, 170, 282, 313, 397, 516
BspACI CCGC 2 cut(s) 275, 286
BspCNI CTCAG 1 cut(s) 619
BspFNI CGCG 1 cut(s) 288
BspMI ACCTGC 1 cut(s) 37
BspPI GGATC 5 cut(s) 165, 277, 321, 405, 524
BspQI GCTCTTC 2 cut(s) 315, 598
BspT104I TTCGAA 1 cut(s) 59
BspTI CTTAAG 1 cut(s) 484
BsrFI RCCGGY 1 cut(s) 37
BsrI ACTGG 1 cut(s) 592
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 659
BssMI GATC 6 cut(s) 15, 170, 282, 313, 397, 516
Bst4CI ACNGT 1 cut(s) 207
Bst6I CTCTTC 4 cut(s) 56, 145, 315, 598
BstAFI CTTAAG 1 cut(s) 484
BstBI TTCGAA 1 cut(s) 59
BstC8I GCNNGC 4 cut(s) 35, 39, 273, 290
BstDEI CTNAG 5 cut(s) 117, 293, 374, 393, 627
BstFNI CGCG 1 cut(s) 288
BstKTI GATC 6 cut(s) 18, 173, 285, 316, 400, 519
BstMAI GTCTC 1 cut(s) 645
BstMBI GATC 6 cut(s) 15, 170, 282, 313, 397, 516
BstMWI GCNNNNNNNGC 3 cut(s) 43, 122, 449
BstSLI GKGCMC 2 cut(s) 212, 427
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 480, 563
BstV2I GAAGAC 1 cut(s) 127
BstX2I RGATCY 4 cut(s) 170, 282, 313, 516
BstYI RGATCY 4 cut(s) 170, 282, 313, 516
BtsIMutI CAGTG 1 cut(s) 212
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 4 cut(s) 35, 39, 273, 290
Cfr10I RCCGGY 1 cut(s) 37
CseI GACGC 1 cut(s) 122
Csp6I GTAC 2 cut(s) 199, 383
CviAII CATG 2 cut(s) 250, 637
CviQI GTAC 2 cut(s) 199, 383
DdeI CTNAG 5 cut(s) 117, 293, 374, 393, 627
DpnI GATC 6 cut(s) 17, 172, 284, 315, 399, 518
DpnII GATC 6 cut(s) 15, 170, 282, 313, 397, 516
Eam1104I CTCTTC 4 cut(s) 56, 145, 315, 598
EarI CTCTTC 4 cut(s) 56, 145, 315, 598
Eco88I CYCGRG 1 cut(s) 650
FaeI CATG 2 cut(s) 253, 640
FaiI YATR 8 cut(s) 159, 251, 300, 302, 332, 503, 545, 638
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FatI CATG 2 cut(s) 249, 636
FauNDI CATATG 1 cut(s) 300
Fnu4HI GCNGC 2 cut(s) 494, 577
Fsp4HI GCNGC 2 cut(s) 494, 577
FspBI CTAG 2 cut(s) 317, 573
GluI GCNGC 2 cut(s) 494, 577
HapII CCGG 2 cut(s) 38, 90
HgaI GACGC 1 cut(s) 122
Hin1II CATG 2 cut(s) 253, 640
HinfI GANTC 6 cut(s) 233, 412, 418, 506, 554, 614
HpaII CCGG 2 cut(s) 38, 90
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 2 cut(s) 210, 606
Hpy188I TCNGA 5 cut(s) 402, 417, 553, 628, 663
Hpy188III TCNNGA 4 cut(s) 19, 82, 168, 317
Hpy8I GTNNAC 2 cut(s) 210, 606
Hpy99I CGWCG 2 cut(s) 116, 514
HpyAV CCTTC 3 cut(s) 175, 304, 359
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 5 cut(s) 194, 210, 249, 343, 561
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 122, 449
HpyF3I CTNAG 5 cut(s) 117, 293, 374, 393, 627
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 2 cut(s) 253, 640
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
Kzo9I GATC 6 cut(s) 15, 170, 282, 313, 397, 516
LguI GCTCTTC 2 cut(s) 315, 598
LmnI GCTCC 3 cut(s) 268, 440, 663
LpnPI CCDG 9 cut(s) 32, 47, 51, 103, 181, 187, 311, 479, 573
Lsp1109I GCAGC 2 cut(s) 480, 563
LweI GCATC 1 cut(s) 557
MaeI CTAG 2 cut(s) 317, 573
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 49
MalI GATC 6 cut(s) 17, 172, 284, 315, 399, 518
MboI GATC 6 cut(s) 15, 170, 282, 313, 397, 516
MboII GAAGA 7 cut(s) 34, 73, 127, 132, 332, 467, 585
MflI RGATCY 4 cut(s) 170, 282, 313, 516
MhlI GDGCHC 2 cut(s) 212, 427
MluCI AATT 1 cut(s) 564
MlyI GAGTC 4 cut(s) 242, 421, 515, 608
MroNI GCCGGC 1 cut(s) 37
MseI TTAA 2 cut(s) 470, 485
MspA1I CMGCKG 1 cut(s) 239
MspCI CTTAAG 1 cut(s) 484
MspI CCGG 2 cut(s) 38, 90
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 3 cut(s) 43, 122, 449
NaeI GCCGGC 1 cut(s) 39
NdeI CATATG 1 cut(s) 300
NdeII GATC 6 cut(s) 15, 170, 282, 313, 397, 516
NgoMIV GCCGGC 1 cut(s) 37
NlaIII CATG 2 cut(s) 253, 640
NmeAIII GCCGAG 1 cut(s) 404
NmuCI GTSAC 1 cut(s) 49
NspV TTCGAA 1 cut(s) 59
PaqCI CACCTGC 1 cut(s) 37
PciSI GCTCTTC 2 cut(s) 315, 598
PdiI GCCGGC 1 cut(s) 39
PfeI GAWTC 2 cut(s) 418, 554
PkrI GCNGC 2 cut(s) 495, 578
PleI GAGTC 4 cut(s) 241, 420, 514, 608
PpsI GAGTC 4 cut(s) 241, 420, 514, 608
PsuI RGATCY 4 cut(s) 170, 282, 313, 516
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 2 cut(s) 200, 384
RsaNI GTAC 2 cut(s) 199, 383
SapI GCTCTTC 2 cut(s) 315, 598
SaqAI TTAA 2 cut(s) 470, 485
SatI GCNGC 2 cut(s) 494, 577
Sau3AI GATC 6 cut(s) 15, 170, 282, 313, 397, 516
ScaI AGTACT 1 cut(s) 384
SchI GAGTC 4 cut(s) 242, 421, 515, 608
SduI GDGCHC 2 cut(s) 212, 427
SfaNI GCATC 1 cut(s) 557
SfuI TTCGAA 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
Sse9I AATT 1 cut(s) 564
SsiI CCGC 2 cut(s) 275, 286
SspMI CTAG 2 cut(s) 317, 573
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 1 cut(s) 56
TaqI TCGA 2 cut(s) 18, 59
TasI AATT 1 cut(s) 564
TatI WGTACW 1 cut(s) 382
TfiI GAWTC 2 cut(s) 418, 554
Tru1I TTAA 2 cut(s) 470, 485
Tru9I TTAA 2 cut(s) 470, 485
TscAI CASTG 1 cut(s) 212
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 2 cut(s) 493, 576
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 2 cut(s) 17, 549
TspRI CASTG 1 cut(s) 212
Vha464I CTTAAG 1 cut(s) 484
VneI GTGCAC 1 cut(s) 208
XbaI TCTAGA 1 cut(s) 316
XspI CTAG 2 cut(s) 317, 573
ZrmI AGTACT 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.