Rh4AG336000
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000389
Physical Location & Seq
Reverse (-)
64523954 .. 64532162
8209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG336000.1

Sequence Viewer

Length: 555 bp
ATGTTTTCTGTCATCATCTTTTCTGCTACTGGCAAGCTATGTGAGTCCTCCAGCTCCAGTACGAAGGATGTCATTGCGAGGTATGAATCGCACATTGAAAATGTGGGAAAGTTGGACCGGCCATCTCTTGAGCTCGAGCATGACTGCATCAGGTTGAGTAAGGAACTTGCGAACAAGAGCCGCAACCTAAGGCAGATGAATGGAGAGGATCTAGAAGAGCTGAACATAGATGAGTTGCAGAGATTGGAGAAAGAGATTGAAGGATGTCTTAACCGTGTGAATCAAACTAAGGAAGAAAAGATTAGCAGTGAAGTTCTGGCACTTGAGGCAAAGGGAGCTGAGTTGATGGAAGCGAGTAACCAATTAAGGCAGGATATAGGGATGTTATCCAATGGAAGTGTCACCTTTGAGTCGGATATCTCGACTGCTGAAGAAGGTTGGTTATCGGAGTCTGCCACAAATGCCAGCAGCTGCCTTTCTACTGATTCTTCCCTAGATGATCACTCTGGCACCGACACTTTATCTCTCAAACTTGGGCTTCCTTACGGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

184

Amino Acids

20.16

Weight (kDa)

4.54

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K-box PF01486 45 - 126 4.8e-14 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 509
AciI CCGC 1 cut(s) 181
AclWI GGATC 1 cut(s) 216
AcoI YGGCCR 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 450
AfaI GTAC 1 cut(s) 61
AfiI CCNNNNNNNGG 1 cut(s) 548
AgsI TTSAA 2 cut(s) 98, 260
AluBI AGCT 6 cut(s) 37, 54, 133, 220, 338, 471
AluI AGCT 6 cut(s) 37, 54, 133, 220, 338, 471
Alw21I GWGCWC 1 cut(s) 135
AlwI GGATC 1 cut(s) 216
AlwNI CAGNNNCTG 1 cut(s) 471
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 468, 471
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 1 cut(s) 115
AxyI CCTNAGG 1 cut(s) 188
BanI GGYRCC 1 cut(s) 509
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 458, 480
BccI CCATC 2 cut(s) 130, 340
BclI TGATCA 1 cut(s) 499
BfaI CTAG 2 cut(s) 212, 494
BisI GCNGC 3 cut(s) 181, 469, 472
BlsI GCNGC 3 cut(s) 182, 470, 473
Bme18I GGWCC 1 cut(s) 115
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 511
BmsI GCATC 1 cut(s) 156
BpmI CTGGAG 2 cut(s) 34, 40
BpuEI CTTGAG 2 cut(s) 149, 344
Bsc4I CCNNNNNNNGG 1 cut(s) 548
Bse118I RCCGGY 1 cut(s) 117
Bse1I ACTGG 2 cut(s) 34, 57
Bse21I CCTNAGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 72
BseGI GGATG 3 cut(s) 73, 269, 387
BseLI CCNNNNNNNGG 1 cut(s) 548
BseMI GCAATG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 2 cut(s) 34, 57
BseXI GCAGC 2 cut(s) 458, 480
BshFI GGCC 1 cut(s) 121
BshNI GGYRCC 1 cut(s) 509
BsiHKAI GWGCWC 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 548
BsnI GGCC 1 cut(s) 121
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 2 cut(s) 208, 499
BspACI CCGC 1 cut(s) 181
BspANI GGCC 1 cut(s) 121
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 511
BspPI GGATC 1 cut(s) 216
BspQI GCTCTTC 1 cut(s) 210
BspT107I GGYRCC 1 cut(s) 509
BsrDI GCAATG 1 cut(s) 72
BsrFI RCCGGY 1 cut(s) 117
BsrI ACTGG 2 cut(s) 34, 57
BssAI RCCGGY 1 cut(s) 117
BssMI GATC 2 cut(s) 208, 499
Bst4CI ACNGT 2 cut(s) 275, 548
Bst6I CTCTTC 1 cut(s) 210
BstC8I GCNNGC 2 cut(s) 35, 466
BstDEI CTNAG 3 cut(s) 188, 288, 339
BstF5I GGATG 3 cut(s) 73, 269, 387
BstKTI GATC 2 cut(s) 211, 502
BstMBI GATC 2 cut(s) 208, 499
BstMWI GCNNNNNNNGC 3 cut(s) 326, 335, 461
BstV1I GCAGC 2 cut(s) 458, 480
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
Bsu36I CCTNAGG 1 cut(s) 188
BsuRI GGCC 1 cut(s) 121
BtsCI GGATG 3 cut(s) 73, 269, 387
BtsI GCAGTG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 2 cut(s) 35, 466
CaiI CAGNNNCTG 1 cut(s) 471
Cfr10I RCCGGY 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 60
CviAII CATG 1 cut(s) 140
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 3 cut(s) 188, 288, 339
DpnI GATC 2 cut(s) 210, 501
DpnII GATC 2 cut(s) 208, 499
EaeI YGGCCR 1 cut(s) 119
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 135
Eco32I GATATC 1 cut(s) 418
Eco47I GGWCC 1 cut(s) 115
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 450
Eco81I CCTNAGG 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 133
EcoRV GATATC 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 135
FaeI CATG 1 cut(s) 143
FaiI YATR 5 cut(s) 40, 84, 141, 227, 377
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FatI CATG 1 cut(s) 139
FbaI TGATCA 1 cut(s) 499
Fnu4HI GCNGC 3 cut(s) 181, 469, 472
FokI GGATG 3 cut(s) 80, 276, 394
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 3 cut(s) 181, 469, 472
FspBI CTAG 2 cut(s) 212, 494
GluI GCNGC 3 cut(s) 181, 469, 472
GsuI CTGGAG 2 cut(s) 34, 40
HaeIII GGCC 1 cut(s) 121
HapII CCGG 1 cut(s) 118
Hin1II CATG 1 cut(s) 143
HinfI GANTC 6 cut(s) 44, 86, 280, 410, 449, 485
HpaII CCGG 1 cut(s) 118
HphI GGTGA 1 cut(s) 394
Hpy188I TCNGA 2 cut(s) 415, 448
Hpy188III TCNNGA 3 cut(s) 128, 212, 421
HpyAV CCTTC 3 cut(s) 58, 254, 428
HpyCH4III ACNGT 2 cut(s) 275, 548
HpyCH4V TGCA 2 cut(s) 147, 238
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 335, 461
HpyF3I CTNAG 3 cut(s) 188, 288, 339
Hsp92II CATG 1 cut(s) 143
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 2 cut(s) 208, 499
LguI GCTCTTC 1 cut(s) 210
LmnI GCTCC 2 cut(s) 59, 335
LpnPI CCDG 9 cut(s) 15, 64, 70, 131, 136, 302, 356, 478, 492
Lsp1109I GCAGC 2 cut(s) 458, 480
LweI GCATC 1 cut(s) 156
MaeI CTAG 2 cut(s) 212, 494
MaeIII GTNAC 2 cut(s) 356, 400
MalI GATC 2 cut(s) 210, 501
MboI GATC 2 cut(s) 208, 499
MboII GAAGA 4 cut(s) 227, 305, 443, 480
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 1 cut(s) 362
MlyI GAGTC 3 cut(s) 53, 419, 458
MmeI TCCRAC 2 cut(s) 93, 393
MnlI CCTC 4 cut(s) 58, 72, 199, 319
MseI TTAA 2 cut(s) 270, 365
MspA1I CMGCKG 1 cut(s) 471
MspI CCGG 1 cut(s) 118
MwoI GCNNNNNNNGC 3 cut(s) 326, 335, 461
NdeII GATC 2 cut(s) 208, 499
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 1 cut(s) 511
NmuCI GTSAC 1 cut(s) 400
PaeR7I CTCGAG 1 cut(s) 134
PciSI GCTCTTC 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 419
PfeI GAWTC 3 cut(s) 86, 280, 485
PkrI GCNGC 3 cut(s) 182, 470, 473
PleI GAGTC 3 cut(s) 52, 418, 457
PpsI GAGTC 3 cut(s) 52, 418, 457
Psp124BI GAGCTC 1 cut(s) 135
PspN4I GGNNCC 1 cut(s) 511
PspPI GGNCC 1 cut(s) 115
PspXI VCTCGAGB 1 cut(s) 134
PstNI CAGNNNCTG 1 cut(s) 471
PsuI RGATCY 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 471
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SacI GAGCTC 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 210
SaqAI TTAA 2 cut(s) 270, 365
SatI GCNGC 3 cut(s) 181, 469, 472
Sau3AI GATC 2 cut(s) 208, 499
Sau96I GGNCC 1 cut(s) 115
SchI GAGTC 3 cut(s) 53, 419, 458
SduI GDGCHC 1 cut(s) 135
SfaNI GCATC 1 cut(s) 156
Sfr274I CTCGAG 1 cut(s) 134
SinI GGWCC 1 cut(s) 115
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 3 cut(s) 128, 134, 323
SmoI CTYRAG 3 cut(s) 128, 134, 323
Sse9I AATT 1 cut(s) 362
SsiI CCGC 1 cut(s) 181
SspMI CTAG 2 cut(s) 212, 494
SstI GAGCTC 1 cut(s) 135
TaaI ACNGT 2 cut(s) 275, 548
TaqI TCGA 2 cut(s) 135, 422
TasI AATT 1 cut(s) 362
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 3 cut(s) 86, 280, 485
Tru1I TTAA 2 cut(s) 270, 365
Tru9I TTAA 2 cut(s) 270, 365
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 2 cut(s) 468, 471
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 2 cut(s) 99, 212
TspRI CASTG 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 115
XbaI TCTAGA 1 cut(s) 211
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 2 cut(s) 212, 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.