Rmu_sc0008851.1_g000011
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008851.1
OG0000389
Physical Location & Seq
Forward (+)
44133 .. 56810
12678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008851.1_g000011.1.cds

Sequence Viewer

Length: 1233 bp
atgaataagatcaagattgagaagatagaaaacctgccggcgaggcaggtgacgttttcaaagaggagacaagggctgttcaagaaagccggagaattatcagttctctgcgacgctgaggttgctgtcatcgtcttttcttctactggcaagctctacgagtcctccagctccagtacgaaggatgtcattgcaaggtacaacctgcacactgaagatggggaagagggggaccagcagccacctcctgagctccagctggagaagaatgagtgcatgaggttgaataaggaacttgctgacaagatcctcaagctaaggcagatggaggggcaggatctagaagagctgactatagatgagttgcagagattggagaataggattgaaggaggactcagccgtgtacttcaagctaaggatgaaagtattatgagtcagattgtggcacttgaaacaaagggagctgagttgacagaagcaaacaaccaattaaggcagaggttagggatgccatccaatggagatggaaatagagctagtggtgttgctttggagtcggagatctcaactgatgaagaaggaggtatggcatcggaatttgccacaagttccaccggctactacggtactggttcttcgacttcttcccttgaggatgactcctctgacaacaccttatccctcaaacttggtacgaaggatgtcattgcaaggtacaacctgcacactgaagatggggaagagggggaccagcagccacctcctgagctccagctggagaataatgagtgcatgaggttgaataaggaacttgctgacaagatcctcaagctaaggcagatggaggggcaggatctagaagagctgactatagatgagttgcagagactggagaataggattgaaggaggactcagccgtgtacttcaagctaaggatgaaagtattatgagtcagattgtggcacttgaaacaaagggagccgagttgacagaagcaaacaaccaattaaggcagaggttagggatgctatccaatggagatggaaatagagctagtggtgttgctttggagtcggagatctcaactgatgaagaaggaggtatggcatcggaatttgccacaagttccaccggctactacggtactggttcttcgacttcttcccttgaggatgactcctctgacaacaccttatccctcaaacttgggcttcctcgctgtggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

410

Amino Acids

44.86

Weight (kDa)

4.52

Isoelectric Point (pI)

55.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 37
Acc36I ACCTGC 4 cut(s) 37, 42, 213, 732
AccB7I CCANNNNNTGG 1 cut(s) 521
AclWI GGATC 4 cut(s) 301, 345, 820, 864
AcsI RAATTY 2 cut(s) 599, 1118
AcuI CTGAAG 2 cut(s) 234, 753
AfaI GTAC 8 cut(s) 178, 200, 408, 631, 697, 719, 927, 1150
AfiI CCNNNNNNNGG 2 cut(s) 521, 1226
Alw21I GWGCWC 2 cut(s) 255, 774
Alw26I GTCTC 2 cut(s) 61, 883
AlwI GGATC 4 cut(s) 301, 345, 820, 864
AlwNI CAGNNNCTG 1 cut(s) 892
ApeKI GCWGC 2 cut(s) 238, 757
ApoI RAATTY 2 cut(s) 599, 1118
AspS9I GGNCC 2 cut(s) 232, 751
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 2 cut(s) 232, 751
BanII GRGCYC 2 cut(s) 255, 774
BarI GAAGNNNNNNTAC 4 cut(s) 622, 654, 1141, 1173
Bbv12I GWGCWC 2 cut(s) 255, 774
BbvCI CCTCAGC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 250, 769
BccI CCATC 7 cut(s) 212, 319, 521, 523, 731, 838, 1040
BceAI ACGGC 2 cut(s) 387, 906
BcoDI GTCTC 2 cut(s) 61, 883
BfaI CTAG 4 cut(s) 341, 540, 860, 1059
BfmI CTRYAG 2 cut(s) 354, 873
BfuAI ACCTGC 4 cut(s) 37, 42, 213, 732
BglI GCCNNNNNGGC 1 cut(s) 43
BglII AGATCT 2 cut(s) 564, 1083
BisI GCNGC 2 cut(s) 239, 758
BlsI GCNGC 2 cut(s) 240, 759
Bme18I GGWCC 2 cut(s) 232, 751
BmgT120I GGNCC 2 cut(s) 232, 751
BmiI GGNNCC 3 cut(s) 233, 752, 985
BmsI GCATC 4 cut(s) 501, 602, 1020, 1121
BplI GAGNNNNNCTC 4 cut(s) 647, 679, 1166, 1198
BpmI CTGGAG 7 cut(s) 151, 157, 239, 281, 758, 800, 914
Bpu10I CCTNAGC 7 cut(s) 117, 249, 317, 417, 768, 836, 936
BpuEI CTTGAG 4 cut(s) 296, 674, 815, 1193
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 2 cut(s) 521, 1226
Bse118I RCCGGY 3 cut(s) 37, 617, 1136
Bse1I ACTGG 5 cut(s) 151, 174, 637, 897, 1156
Bse3DI GCAATG 2 cut(s) 189, 708
BseGI GGATG 9 cut(s) 190, 427, 515, 516, 664, 709, 946, 1035, 1183
BseLI CCNNNNNNNGG 2 cut(s) 521, 1226
BseMI GCAATG 2 cut(s) 189, 708
BseMII CTCAG 6 cut(s) 108, 240, 412, 459, 759, 931
BseNI ACTGG 5 cut(s) 151, 174, 637, 897, 1156
BseRI GAGGAG 3 cut(s) 79, 655, 1174
BseXI GCAGC 2 cut(s) 250, 769
BsgI GTGCAG 2 cut(s) 191, 710
BsiHKAI GWGCWC 2 cut(s) 255, 774
BsiSI CCGG 4 cut(s) 38, 90, 618, 1137
BslFI GGGAC 2 cut(s) 245, 764
BslI CCNNNNNNNGG 2 cut(s) 521, 1226
BsmAI GTCTC 2 cut(s) 61, 883
BsmFI GGGAC 2 cut(s) 245, 764
Bsp1286I GDGCHC 2 cut(s) 255, 774
Bsp143I GATC 7 cut(s) 9, 306, 337, 564, 825, 856, 1083
BspCNI CTCAG 6 cut(s) 109, 241, 411, 460, 760, 930
BspLI GGNNCC 3 cut(s) 233, 752, 985
BspMI ACCTGC 4 cut(s) 37, 42, 213, 732
BspPI GGATC 4 cut(s) 301, 345, 820, 864
BspQI GCTCTTC 2 cut(s) 339, 858
BsrDI GCAATG 2 cut(s) 189, 708
BsrFI RCCGGY 3 cut(s) 37, 617, 1136
BsrI ACTGG 5 cut(s) 151, 174, 637, 897, 1156
BssAI RCCGGY 3 cut(s) 37, 617, 1136
BssMI GATC 7 cut(s) 9, 306, 337, 564, 825, 856, 1083
Bst4CI ACNGT 2 cut(s) 629, 1148
Bst6I CTCTTC 4 cut(s) 219, 339, 738, 858
BstC8I GCNNGC 2 cut(s) 39, 152
BstF5I GGATG 9 cut(s) 190, 427, 515, 516, 664, 709, 946, 1035, 1183
BstKTI GATC 7 cut(s) 12, 309, 340, 567, 828, 859, 1086
BstMAI GTCTC 2 cut(s) 61, 883
BstMBI GATC 7 cut(s) 9, 306, 337, 564, 825, 856, 1083
BstMWI GCNNNNNNNGC 2 cut(s) 43, 122
BstSFI CTRYAG 2 cut(s) 354, 873
BstV1I GCAGC 2 cut(s) 250, 769
BstX2I RGATCY 6 cut(s) 306, 337, 564, 825, 856, 1083
BstYI RGATCY 6 cut(s) 306, 337, 564, 825, 856, 1083
BtsCI GGATG 9 cut(s) 190, 427, 515, 516, 664, 709, 946, 1035, 1183
BtsIMutI CAGTG 2 cut(s) 210, 729
BveI ACCTGC 4 cut(s) 37, 42, 213, 732
Cac8I GCNNGC 2 cut(s) 39, 152
CaiI CAGNNNCTG 1 cut(s) 892
Cfr10I RCCGGY 3 cut(s) 37, 617, 1136
Cfr13I GGNCC 2 cut(s) 232, 751
CseI GACGC 1 cut(s) 122
Csp6I GTAC 8 cut(s) 177, 199, 407, 630, 696, 718, 926, 1149
CviAII CATG 2 cut(s) 277, 796
CviQI GTAC 8 cut(s) 177, 199, 407, 630, 696, 718, 926, 1149
DpnI GATC 7 cut(s) 11, 308, 339, 566, 827, 858, 1085
DpnII GATC 7 cut(s) 9, 306, 337, 564, 825, 856, 1083
Eam1104I CTCTTC 4 cut(s) 219, 339, 738, 858
EarI CTCTTC 4 cut(s) 219, 339, 738, 858
Ecl136II GAGCTC 2 cut(s) 253, 772
Eco24I GRGCYC 2 cut(s) 255, 774
Eco47I GGWCC 2 cut(s) 232, 751
Eco53kI GAGCTC 2 cut(s) 253, 772
Eco57I CTGAAG 2 cut(s) 234, 753
EcoICRI GAGCTC 2 cut(s) 253, 772
EcoT38I GRGCYC 2 cut(s) 255, 774
FaeI CATG 2 cut(s) 280, 799
FaiI YATR 8 cut(s) 278, 356, 434, 590, 797, 875, 953, 1109
FaqI GGGAC 2 cut(s) 245, 764
FatI CATG 2 cut(s) 276, 795
Fnu4HI GCNGC 2 cut(s) 239, 758
FokI GGATG 9 cut(s) 197, 434, 502, 523, 671, 716, 953, 1042, 1190
FriOI GRGCYC 2 cut(s) 255, 774
Fsp4HI GCNGC 2 cut(s) 239, 758
FspBI CTAG 4 cut(s) 341, 540, 860, 1059
GluI GCNGC 2 cut(s) 239, 758
GsuI CTGGAG 7 cut(s) 151, 157, 239, 281, 758, 800, 914
HapII CCGG 4 cut(s) 38, 90, 618, 1137
HgaI GACGC 1 cut(s) 122
Hin1II CATG 2 cut(s) 280, 799
HincII GTYRAC 2 cut(s) 474, 993
HindII GTYRAC 2 cut(s) 474, 993
HinfI GANTC 9 cut(s) 161, 396, 436, 557, 662, 915, 955, 1076, 1181
HpaII CCGG 4 cut(s) 38, 90, 618, 1137
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 4 cut(s) 407, 474, 926, 993
Hpy188I TCNGA 8 cut(s) 441, 562, 598, 670, 960, 1081, 1117, 1189
Hpy188III TCNNGA 6 cut(s) 13, 82, 248, 341, 767, 860
Hpy8I GTNNAC 4 cut(s) 407, 474, 926, 993
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 6 cut(s) 175, 383, 575, 694, 902, 1094
HpyCH4III ACNGT 2 cut(s) 629, 1148
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 8 cut(s) 194, 208, 276, 367, 713, 727, 795, 886
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 122
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 2 cut(s) 280, 799
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
Kzo9I GATC 7 cut(s) 9, 306, 337, 564, 825, 856, 1083
LguI GCTCTTC 2 cut(s) 339, 858
LmnI GCTCC 5 cut(s) 176, 258, 464, 777, 983
Lsp1109I GCAGC 2 cut(s) 250, 769
LweI GCATC 4 cut(s) 501, 602, 1020, 1121
MaeI CTAG 4 cut(s) 341, 540, 860, 1059
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 49
MalI GATC 7 cut(s) 11, 308, 339, 566, 827, 858, 1085
MboI GATC 7 cut(s) 9, 306, 337, 564, 825, 856, 1083
MflI RGATCY 6 cut(s) 306, 337, 564, 825, 856, 1083
MhlI GDGCHC 2 cut(s) 255, 774
MluCI AATT 5 cut(s) 95, 491, 599, 1010, 1118
MlyI GAGTC 9 cut(s) 170, 390, 445, 566, 656, 909, 964, 1085, 1175
MmeI TCCRAC 2 cut(s) 540, 1059
MroNI GCCGGC 1 cut(s) 37
MseI TTAA 2 cut(s) 494, 1013
MspA1I CMGCKG 2 cut(s) 259, 778
MspI CCGG 4 cut(s) 38, 90, 618, 1137
MwoI GCNNNNNNNGC 2 cut(s) 43, 122
NaeI GCCGGC 1 cut(s) 39
NdeII GATC 7 cut(s) 9, 306, 337, 564, 825, 856, 1083
NgoMIV GCCGGC 1 cut(s) 37
NlaIII CATG 2 cut(s) 280, 799
NlaIV GGNNCC 3 cut(s) 233, 752, 985
NmeAIII GCCGAG 1 cut(s) 1012
NmuCI GTSAC 1 cut(s) 49
PaqCI CACCTGC 1 cut(s) 37
PciSI GCTCTTC 2 cut(s) 339, 858
PdiI GCCGGC 1 cut(s) 39
PflMI CCANNNNNTGG 1 cut(s) 521
PkrI GCNGC 2 cut(s) 240, 759
PleI GAGTC 9 cut(s) 169, 390, 444, 565, 656, 909, 963, 1084, 1175
PpsI GAGTC 9 cut(s) 169, 390, 444, 565, 656, 909, 963, 1084, 1175
Psp124BI GAGCTC 2 cut(s) 255, 774
PspN4I GGNNCC 3 cut(s) 233, 752, 985
PspPI GGNCC 2 cut(s) 232, 751
PstNI CAGNNNCTG 1 cut(s) 892
PsuI RGATCY 6 cut(s) 306, 337, 564, 825, 856, 1083
PvuII CAGCTG 2 cut(s) 259, 778
RsaI GTAC 8 cut(s) 178, 200, 408, 631, 697, 719, 927, 1150
RsaNI GTAC 8 cut(s) 177, 199, 407, 630, 696, 718, 926, 1149
SacI GAGCTC 2 cut(s) 255, 774
SapI GCTCTTC 2 cut(s) 339, 858
SaqAI TTAA 2 cut(s) 494, 1013
SatI GCNGC 2 cut(s) 239, 758
Sau3AI GATC 7 cut(s) 9, 306, 337, 564, 825, 856, 1083
Sau96I GGNCC 2 cut(s) 232, 751
SchI GAGTC 9 cut(s) 170, 390, 445, 566, 656, 909, 964, 1085, 1175
SduI GDGCHC 2 cut(s) 255, 774
SfaNI GCATC 4 cut(s) 501, 602, 1020, 1121
SfcI CTRYAG 2 cut(s) 354, 873
SinI GGWCC 2 cut(s) 232, 751
SmlI CTYRAG 4 cut(s) 311, 653, 830, 1172
SmoI CTYRAG 4 cut(s) 311, 653, 830, 1172
Sse9I AATT 5 cut(s) 95, 491, 599, 1010, 1118
SspMI CTAG 4 cut(s) 341, 540, 860, 1059
SstI GAGCTC 2 cut(s) 255, 774
TaaI ACNGT 2 cut(s) 629, 1148
TaiI ACGT 1 cut(s) 56
TaqI TCGA 2 cut(s) 641, 1160
TasI AATT 5 cut(s) 95, 491, 599, 1010, 1118
TatI WGTACW 2 cut(s) 406, 925
Tru1I TTAA 2 cut(s) 494, 1013
Tru9I TTAA 2 cut(s) 494, 1013
TscAI CASTG 2 cut(s) 217, 736
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 2 cut(s) 238, 757
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 5 cut(s) 17, 438, 591, 957, 1110
TspRI CASTG 2 cut(s) 217, 736
Van91I CCANNNNNTGG 1 cut(s) 521
VpaK11BI GGWCC 2 cut(s) 232, 751
XapI RAATTY 2 cut(s) 599, 1118
XbaI TCTAGA 2 cut(s) 340, 859
XspI CTAG 4 cut(s) 341, 540, 860, 1059
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.