MD08G1196900.v1.1
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000389
Physical Location & Seq
Forward (+)
25398284 .. 25408886
10603 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1196900.v1.1.491

Sequence Viewer

Length: 453 bp
ATGCTTGATCAGCTGCAGTTGGAGAAAGAAAACACGATCAGGCTGAGTAAGGAACTTGAGGATAAGACCCGCAAGCTGAGGCACCTGAAGGGTGAGGAGCTTCAAGACTTGGACCTGGATGAACTGCAGAAGTTAGAAAAATTGGTGGAAGCAAGCCATGGCCGTGTGATGGAAACTAAGGAAAAAAAGATTATGAGTGAGATTATGGCACTTGCGAAAAAGGGAGATGAGCTTGTAGAAGCTAACAACCAGCTAAAGCAGAGGATGGTGATGTTATCCGCCCGAGGAGATATCGGACCGGCGGCGATCATGGAGTTGGAAAACCTGAATAATGGTGGAGAAGAAGGCGTGACATCTGAATCAGCTACAAATGTCACCACCAGCTCCAACAGTCCTCTTTCTCTTGAAGATGACTGCTCCGACATCTTGTCTCTCAAACTGGGGCTACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

151

Amino Acids

16.69

Weight (kDa)

4.77

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K-box PF01486 6 - 89 3.2e-13 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 81
AciI CCGC 3 cut(s) 70, 279, 302
AcoI YGGCCR 1 cut(s) 160
AcuI CTGAAG 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 2 cut(s) 104, 407
AhdI GACNNNNNGTC 1 cut(s) 427
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 8 cut(s) 13, 76, 100, 232, 242, 253, 365, 384
AluI AGCT 8 cut(s) 13, 76, 100, 232, 242, 253, 365, 384
Alw26I GTCTC 1 cut(s) 435
Ama87I CYCGRG 1 cut(s) 282
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 13
AspS9I GGNCC 2 cut(s) 112, 296
AsuHPI GGTGA 3 cut(s) 104, 280, 367
AvaI CYCGRG 1 cut(s) 282
AvaII GGWCC 2 cut(s) 112, 296
BanI GGYRCC 1 cut(s) 81
BbvCI CCTCAGC 1 cut(s) 77
BccI CCATC 2 cut(s) 163, 259
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 1 cut(s) 116
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 435
BfmI CTRYAG 2 cut(s) 14, 125
BisI GCNGC 2 cut(s) 14, 303
BlsI GCNGC 2 cut(s) 15, 304
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 2 cut(s) 112, 296
BmeRI GACNNNNNGTC 1 cut(s) 427
BmeT110I CYCGRG 1 cut(s) 282
BmgT120I GGNCC 2 cut(s) 112, 296
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 116
BmrI ACTGGG 1 cut(s) 449
BmuI ACTGGG 1 cut(s) 449
Bpu10I CCTNAGC 1 cut(s) 77
BpuEI CTTGAG 1 cut(s) 77
BsaJI CCNNGG 2 cut(s) 157, 283
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 444
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 157, 283
BseGI GGATG 2 cut(s) 124, 270
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMII CTCAG 2 cut(s) 35, 68
BseNI ACTGG 1 cut(s) 444
BseRI GAGGAG 2 cut(s) 110, 300
BshFI GGCC 1 cut(s) 162
BshNI GGYRCC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 282
BsiSI CCGG 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 435
BsnI GGCC 1 cut(s) 162
BsoBI CYCGRG 1 cut(s) 282
Bsp143I GATC 3 cut(s) 7, 36, 306
Bsp19I CCATGG 1 cut(s) 157
BspACI CCGC 3 cut(s) 70, 279, 302
BspANI GGCC 1 cut(s) 162
BspCNI CTCAG 2 cut(s) 36, 69
BspLI GGNNCC 1 cut(s) 83
BspMAI CTGCAG 2 cut(s) 18, 129
BspT107I GGYRCC 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 1 cut(s) 444
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 2 cut(s) 157, 283
BssMI GATC 3 cut(s) 7, 36, 306
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 392
BstC8I GCNNGC 2 cut(s) 74, 154
BstDEI CTNAG 4 cut(s) 44, 77, 177, 450
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 2 cut(s) 124, 270
BstKTI GATC 3 cut(s) 10, 39, 309
BstMAI GTCTC 1 cut(s) 435
BstMBI GATC 3 cut(s) 7, 36, 306
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 2 cut(s) 14, 125
BsuRI GGCC 1 cut(s) 162
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 2 cut(s) 124, 270
Cac8I GCNNGC 2 cut(s) 74, 154
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 112, 296
CpoI CGGWCCG 1 cut(s) 296
CspI CGGWCCG 1 cut(s) 296
CviAII CATG 2 cut(s) 158, 310
DdeI CTNAG 4 cut(s) 44, 77, 177, 450
DpnI GATC 3 cut(s) 9, 38, 308
DpnII GATC 3 cut(s) 7, 36, 306
DriI GACNNNNNGTC 1 cut(s) 427
EaeI YGGCCR 1 cut(s) 160
Eam1105I GACNNNNNGTC 1 cut(s) 427
EciI GGCGGA 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 157
Eco32I GATATC 1 cut(s) 292
Eco47I GGWCC 2 cut(s) 112, 296
Eco57I CTGAAG 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 282
EcoRII CCWGG 1 cut(s) 114
EcoRV GATATC 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 161, 313
FaiI YATR 4 cut(s) 159, 194, 206, 311
FatI CATG 2 cut(s) 157, 309
FauI CCCGC 1 cut(s) 77
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 2 cut(s) 14, 303
FokI GGATG 2 cut(s) 131, 277
Fsp4HI GCNGC 2 cut(s) 14, 303
GluI GCNGC 2 cut(s) 14, 303
HaeIII GGCC 1 cut(s) 162
HapII CCGG 1 cut(s) 299
Hin1II CATG 2 cut(s) 161, 313
HinfI GANTC 1 cut(s) 359
HpaII CCGG 1 cut(s) 299
HphI GGTGA 3 cut(s) 104, 280, 367
Hpy188I TCNGA 3 cut(s) 296, 358, 421
Hpy188III TCNNGA 2 cut(s) 104, 404
HpyAV CCTTC 2 cut(s) 82, 338
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4V TGCA 2 cut(s) 16, 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 4 cut(s) 44, 77, 177, 450
Hsp92II CATG 2 cut(s) 161, 313
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 3 cut(s) 7, 36, 306
LmnI GCTCC 3 cut(s) 97, 389, 422
LpnPI CCDG 9 cut(s) 25, 98, 101, 128, 263, 312, 338, 394, 425
MaeIII GTNAC 2 cut(s) 349, 373
MalI GATC 3 cut(s) 9, 38, 308
MboI GATC 3 cut(s) 7, 36, 306
MboII GAAGA 2 cut(s) 353, 419
MluCI AATT 1 cut(s) 140
MmeI TCCRAC 3 cut(s) 297, 411, 444
MnlI CCTC 6 cut(s) 52, 72, 88, 255, 278, 405
MslI CAYNNNNRTG 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 13
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 10
NcoI CCATGG 1 cut(s) 157
NdeII GATC 3 cut(s) 7, 36, 306
NlaIII CATG 2 cut(s) 161, 313
NlaIV GGNNCC 1 cut(s) 83
NmuCI GTSAC 2 cut(s) 349, 373
PfeI GAWTC 1 cut(s) 359
PkrI GCNGC 2 cut(s) 15, 304
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 83
PspPI GGNCC 2 cut(s) 112, 296
PstI CTGCAG 2 cut(s) 18, 129
PvuII CAGCTG 1 cut(s) 13
RseI CAYNNNNRTG 1 cut(s) 162
Rsr2I CGGWCCG 1 cut(s) 296
RsrII CGGWCCG 1 cut(s) 296
SatI GCNGC 2 cut(s) 14, 303
Sau3AI GATC 3 cut(s) 7, 36, 306
Sau96I GGNCC 2 cut(s) 112, 296
ScrFI CCNGG 1 cut(s) 116
SfcI CTRYAG 2 cut(s) 14, 125
SinI GGWCC 2 cut(s) 112, 296
SmiMI CAYNNNNRTG 1 cut(s) 162
SmlI CTYRAG 1 cut(s) 56
SmoI CTYRAG 1 cut(s) 56
Sse9I AATT 1 cut(s) 140
SsiI CCGC 3 cut(s) 70, 279, 302
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 392
TasI AATT 1 cut(s) 140
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 1 cut(s) 359
TseFI GTSAC 2 cut(s) 349, 373
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 2 cut(s) 349, 373
TspDTI ATGAA 1 cut(s) 135
VpaK11BI GGWCC 2 cut(s) 112, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.