Rorug07G0087200
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000389
Physical Location & Seq
Reverse (-)
6837613 .. 6840821
3209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0087200.1

Sequence Viewer

Length: 1551 bp
ATGACTACGATGTCAACCAACCCCAACACCAGTTCCAGTCCCAAAGACCAGACCAATTCCCGATCACCCAAAAGCCGGCGGTGGCGGCAGAGCCAGGTGGCGACGGCCGTGATAGCCATAGCGGCGCTCTTGATCTCCACGGCCGCGTGGCTCTCTCTGGTGTTCTCCGGCAGTCCTCCGTCGCTCACCGTCGCCCGCTTGCAGAACAAGGCACCGGCTCCGTCTTTTGCTCAGTACCGAAACGACAGCGTTGCGGTTTCCGAAGACGAAGAGTGGAGCGACGAGGAGGAGCTGAGCCTAGACGACGTCGTTTTCGGGATTGCCGGGTCGTCCGGGCTCTGGAAGCAGCGGAAGGAGTACGTCAGGCTGTGGTGGCGTCCGGACGACATGCGCGGCCACGTCTGGATGGACGAGAAAGTCCCTGAAGAAGAAAACGACGAGTCGTTGCCTCCGATCATGGTGTCCGAGGACATCTCGAGGTTCCGGTACACAAACCCGACGGGTCACCCGTCGGGGCTCCGAATCTCCCGCATAATTTCCGAGTGCTTCCGCCTCCTCCTGCCCAAAGTCCGGTGGTTCGTGCTGGCGGACGACGACACCATCATCAACGCCGATAACCTCGTCGCAGTTCTGAGCAAATACGACGCGTCGGAGATGGTTTATGTGGGGAGTCCATCGGAGAGTCACTCTGCCAATACTTATTTCAGTCATTCCATGGCTTTTGGCGGTGGGGGTATTGCGATTAGCTATCCTCTGGCGAAGGCTCTCTCTGAAATTCAAGATGAGTGTCTCGAGAGGTACCCGAAACTCTATGGAAGCGATGATCGACTCCATGCCTGCATTACTGAGCTTGGGGTTCCTTTAAGTAGAGAGCCCGGCTTTCACCAGTACGATATCAGAGGTAACGCACACGGTCTTCTATCTTCTCATCCGATAGCACCATTTGTGTCGATTCACCATGTTGAAGCTGTGGATCCTTTTTATCCTGGTTTAAACTCTCTACAAAGTTTGAAGCTGTTTACACATGCTATGAGACTCCAACCCAGCAGCTTTTTGCAGCGATCCATTTGTTATGATCACCGATACCATCTCACATTTTCGGTTTCTCTTGGTTATGCGGTCCAAGTCTTCCCACAAATCGTGCTTCCTCGTGACCTCGAGCGATCAGAGCAGACTTACTCTGCTTGGAATGGAATCACCACGAGGAATGAATTTGATATGGACACCAAAGACGTGTACAGGTCTGTTTGTAAGAAGCCCATTCTGTTCTTCTTGAAAGATATTAGGTCACAGGGTAATGCTACTTTGGGTTCATATGTGAGGAGTAGAGCAAAAGATGATTTCAAAAGAACAGTTCTATGCTTTCCCCGATCCCGGCATTTGCGCCATCTGCGAAAAATTCAGGTTTTGGTTCATCCACTCACCAAGAAATGGCATTTGGTACCGCGCCGGCTATGTTGCCAACTGAACCAAAAGAGTGACGAATTCCTTAGATTAGAAGTTGGACAATGTGCTAAGGGAGCTTCTGGTTCTATTACTAATTTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

516

Amino Acids

58.45

Weight (kDa)

8.45

Isoelectric Point (pI)

55.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fringe PF02434 186 - 296 1.5e-17 Fringe-like
DUF604 PF04646 232 - 487 3.4e-101 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 10, 416
AatII GACGTC 1 cut(s) 309
Acc65I GGTACC 2 cut(s) 798, 1441
AccB1I GGYRCC 3 cut(s) 211, 798, 1441
AccB7I CCANNNNNTGG 1 cut(s) 1431
AccII CGCG 4 cut(s) 146, 393, 647, 1447
AccIII TCCGGA 1 cut(s) 379
AclWI GGATC 4 cut(s) 968, 981, 1056, 1365
AcoI YGGCCR 3 cut(s) 105, 141, 394
AcsI RAATTY 4 cut(s) 774, 1211, 1398, 1484
AcuI CTGAAG 1 cut(s) 444
AcyI GRCGYC 2 cut(s) 306, 376
AfaI GTAC 7 cut(s) 236, 359, 488, 800, 890, 1238, 1443
AfiI CCNNNNNNNGG 5 cut(s) 75, 339, 570, 1374, 1431
AflIII ACRYGT 2 cut(s) 645, 1233
AgsI TTSAA 5 cut(s) 779, 965, 1012, 1276, 1345
AjiI CACGTC 2 cut(s) 400, 1234
AjnI CCWGG 2 cut(s) 93, 985
AjuI GAANNNNNNNTTGG 4 cut(s) 686, 718, 1421, 1453
AluBI AGCT 7 cut(s) 292, 747, 850, 968, 1015, 1050, 1523
AluI AGCT 7 cut(s) 292, 747, 850, 968, 1015, 1050, 1523
Alw26I GTCTC 2 cut(s) 794, 1027
AlwI GGATC 4 cut(s) 968, 981, 1056, 1365
Ama87I CYCGRG 3 cut(s) 475, 791, 1157
Aor13HI TCCGGA 1 cut(s) 379
AoxI GGCC 3 cut(s) 105, 141, 394
ApeKI GCWGC 3 cut(s) 346, 1047, 1057
ApoI RAATTY 4 cut(s) 774, 1211, 1398, 1484
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
Asp718I GGTACC 2 cut(s) 798, 1441
AspLEI GCGC 4 cut(s) 127, 393, 1386, 1449
AspS9I GGNCC 1 cut(s) 1120
AsuC2I CCSGG 4 cut(s) 325, 334, 876, 1375
AsuHPI GGTGA 8 cut(s) 57, 178, 497, 875, 947, 1070, 1189, 1414
AvaI CYCGRG 3 cut(s) 475, 791, 1157
AvaII GGWCC 1 cut(s) 1120
BamHI GGATCC 1 cut(s) 973
BanI GGYRCC 3 cut(s) 211, 798, 1441
BanII GRGCYC 3 cut(s) 339, 519, 876
BauI CACGAG 2 cut(s) 1149, 1201
BbsI GAAGAC 3 cut(s) 270, 908, 1120
BbvI GCAGC 3 cut(s) 358, 1059, 1069
BccI CCATC 6 cut(s) 400, 608, 649, 682, 1095, 1395
BceAI ACGGC 3 cut(s) 92, 120, 156
BcgI CGANNNNNNTGC 2 cut(s) 233, 267
BciT130I CCWGG 2 cut(s) 95, 987
BclI TGATCA 1 cut(s) 1075
BcnI CCSGG 4 cut(s) 325, 334, 876, 1375
BcoDI GTCTC 2 cut(s) 794, 1027
BfaI CTAG 1 cut(s) 299
BfoI RGCGCY 1 cut(s) 128
BglI GCCNNNNNGGC 1 cut(s) 122
BisI GCNGC 7 cut(s) 86, 123, 144, 347, 394, 1048, 1058
BlpI GCTNAGC 1 cut(s) 293
BlsI GCNGC 7 cut(s) 87, 124, 145, 348, 395, 1049, 1059
Bme1390I CCNGG 6 cut(s) 95, 325, 334, 876, 987, 1375
Bme18I GGWCC 1 cut(s) 1120
BmeT110I CYCGRG 3 cut(s) 475, 791, 1157
BmgBI CACGTC 2 cut(s) 400, 1234
BmgT120I GGNCC 1 cut(s) 1120
BmiI GGNNCC 8 cut(s) 213, 219, 482, 518, 800, 858, 975, 1443
BmrFI CCNGG 6 cut(s) 95, 325, 334, 876, 987, 1375
BpiI GAAGAC 3 cut(s) 270, 908, 1120
BplI GAGNNNNNCTC 4 cut(s) 458, 490, 671, 703
Bpu10I CCTNAGC 1 cut(s) 1515
Bpu1102I GCTNAGC 1 cut(s) 293
BpuMI CCSGG 4 cut(s) 325, 334, 876, 1375
BsaHI GRCGYC 2 cut(s) 306, 376
BsaJI CCNNGG 3 cut(s) 138, 465, 714
BsaWI WCCGGW 3 cut(s) 379, 483, 570
Bsc4I CCNNNNNNNGG 5 cut(s) 75, 339, 570, 1374, 1431
Bse118I RCCGGY 3 cut(s) 75, 214, 1449
Bse1I ACTGG 3 cut(s) 30, 36, 886
BseAI TCCGGA 1 cut(s) 379
BseBI CCWGG 2 cut(s) 95, 987
BseDI CCNNGG 3 cut(s) 138, 465, 714
BseGI GGATG 3 cut(s) 411, 928, 1414
BseLI CCNNNNNNNGG 5 cut(s) 75, 339, 570, 1374, 1431
BseMII CTCAG 4 cut(s) 245, 284, 623, 837
BseNI ACTGG 3 cut(s) 30, 36, 886
BseRI GAGGAG 4 cut(s) 299, 302, 545, 1336
BseX3I CGGCCG 2 cut(s) 105, 141
BseXI GCAGC 3 cut(s) 358, 1059, 1069
BseYI CCCAGC 1 cut(s) 1043
Bsh1236I CGCG 4 cut(s) 146, 393, 647, 1447
Bsh1285I CGRYCG 2 cut(s) 108, 144
BshFI GGCC 3 cut(s) 107, 143, 396
BshNI GGYRCC 3 cut(s) 211, 798, 1441
BsiEI CGRYCG 2 cut(s) 108, 144
BsiHKCI CYCGRG 3 cut(s) 475, 791, 1157
BslFI GGGAC 2 cut(s) 24, 404
BslI CCNNNNNNNGG 5 cut(s) 75, 339, 570, 1374, 1431
BsmAI GTCTC 2 cut(s) 794, 1027
BsmFI GGGAC 2 cut(s) 24, 404
BsnI GGCC 3 cut(s) 107, 143, 396
BsoBI CYCGRG 3 cut(s) 475, 791, 1157
Bsp1286I GDGCHC 3 cut(s) 339, 519, 876
Bsp13I TCCGGA 1 cut(s) 379
Bsp1407I TGTACA 1 cut(s) 1236
Bsp143I GATC 9 cut(s) 62, 132, 453, 823, 973, 1061, 1075, 1163, 1370
Bsp1720I GCTNAGC 1 cut(s) 293
Bsp19I CCATGG 1 cut(s) 714
BspANI GGCC 3 cut(s) 107, 143, 396
BspCNI CTCAG 4 cut(s) 244, 285, 624, 838
BspEI TCCGGA 1 cut(s) 379
BspFNI CGCG 4 cut(s) 146, 393, 647, 1447
BspLI GGNNCC 8 cut(s) 213, 219, 482, 518, 800, 858, 975, 1443
BspPI GGATC 4 cut(s) 968, 981, 1056, 1365
BspT107I GGYRCC 3 cut(s) 211, 798, 1441
BsrFI RCCGGY 3 cut(s) 75, 214, 1449
BsrGI TGTACA 1 cut(s) 1236
BsrI ACTGG 3 cut(s) 30, 36, 886
BssAI RCCGGY 3 cut(s) 75, 214, 1449
BssECI CCNNGG 3 cut(s) 138, 465, 714
BssMI GATC 9 cut(s) 62, 132, 453, 823, 973, 1061, 1075, 1163, 1370
BssNI GRCGYC 2 cut(s) 306, 376
BssSI CACGAG 2 cut(s) 1149, 1201
BssT1I CCWWGG 1 cut(s) 714
Bst2BI CACGAG 2 cut(s) 1149, 1201
Bst2UI CCWGG 2 cut(s) 95, 987
Bst4CI ACNGT 3 cut(s) 190, 914, 1354
Bst6I CTCTTC 1 cut(s) 264
BstACI GRCGYC 2 cut(s) 306, 376
BstAUI TGTACA 1 cut(s) 1236
BstC8I GCNNGC 6 cut(s) 77, 196, 200, 585, 838, 1451
BstDEI CTNAG 6 cut(s) 231, 293, 632, 846, 1490, 1515
BstDSI CCRYGG 2 cut(s) 138, 714
BstEII GGTNACC 1 cut(s) 503
BstF5I GGATG 3 cut(s) 411, 928, 1414
BstFNI CGCG 4 cut(s) 146, 393, 647, 1447
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 4 cut(s) 127, 393, 1386, 1449
BstKTI GATC 9 cut(s) 65, 135, 456, 826, 976, 1064, 1078, 1166, 1373
BstMAI GTCTC 2 cut(s) 794, 1027
BstMBI GATC 9 cut(s) 62, 132, 453, 823, 973, 1061, 1075, 1163, 1370
BstMCI CGRYCG 2 cut(s) 108, 144
BstMWI GCNNNNNNNGC 8 cut(s) 85, 113, 122, 343, 373, 1168, 1390, 1520
BstNI CCWGG 2 cut(s) 95, 987
BstNSI RCATGY 2 cut(s) 391, 1028
BstPI GGTNACC 1 cut(s) 503
BstSCI CCNGG 6 cut(s) 93, 323, 332, 874, 985, 1373
BstUI CGCG 4 cut(s) 146, 393, 647, 1447
BstV1I GCAGC 3 cut(s) 358, 1059, 1069
BstV2I GAAGAC 3 cut(s) 270, 908, 1120
BstX2I RGATCY 1 cut(s) 973
BstYI RGATCY 1 cut(s) 973
BstZI CGGCCG 2 cut(s) 105, 141
BsuRI GGCC 3 cut(s) 107, 143, 396
BtgI CCRYGG 2 cut(s) 138, 714
BtgZI GCGATG 1 cut(s) 834
BtrI CACGTC 2 cut(s) 400, 1234
BtsCI GGATG 3 cut(s) 411, 928, 1414
Cac8I GCNNGC 6 cut(s) 77, 196, 200, 585, 838, 1451
CfoI GCGC 4 cut(s) 127, 393, 1386, 1449
Cfr10I RCCGGY 3 cut(s) 75, 214, 1449
Cfr13I GGNCC 1 cut(s) 1120
CseI GACGC 3 cut(s) 365, 636, 653
Csp6I GTAC 7 cut(s) 235, 358, 487, 799, 889, 1237, 1442
CviAII CATG 6 cut(s) 388, 457, 715, 833, 959, 1025
CviQI GTAC 7 cut(s) 235, 358, 487, 799, 889, 1237, 1442
DdeI CTNAG 6 cut(s) 231, 293, 632, 846, 1490, 1515
DpnI GATC 9 cut(s) 64, 134, 455, 825, 975, 1063, 1077, 1165, 1372
DpnII GATC 9 cut(s) 62, 132, 453, 823, 973, 1061, 1075, 1163, 1370
DraI TTTAAA 2 cut(s) 993, 1546
DrdI GACNNNNNNGTC 2 cut(s) 10, 416
DseDI GACNNNNNNGTC 2 cut(s) 10, 416
EaeI YGGCCR 3 cut(s) 105, 141, 394
EagI CGGCCG 2 cut(s) 105, 141
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
EciI GGCGGA 2 cut(s) 539, 602
EclXI CGGCCG 2 cut(s) 105, 141
Eco130I CCWWGG 1 cut(s) 714
Eco24I GRGCYC 3 cut(s) 339, 519, 876
Eco32I GATATC 1 cut(s) 895
Eco47I GGWCC 1 cut(s) 1120
Eco52I CGGCCG 2 cut(s) 105, 141
Eco57I CTGAAG 1 cut(s) 444
Eco88I CYCGRG 3 cut(s) 475, 791, 1157
Eco91I GGTNACC 1 cut(s) 503
EcoO65I GGTNACC 1 cut(s) 503
EcoRI GAATTC 1 cut(s) 1484
EcoRII CCWGG 2 cut(s) 93, 985
EcoRV GATATC 1 cut(s) 895
EcoT14I CCWWGG 1 cut(s) 714
EcoT38I GRGCYC 3 cut(s) 339, 519, 876
ErhI CCWWGG 1 cut(s) 714
FaeI CATG 6 cut(s) 391, 460, 718, 836, 962, 1028
FaqI GGGAC 2 cut(s) 24, 404
FatI CATG 6 cut(s) 387, 456, 714, 832, 958, 1024
FauI CCCGC 2 cut(s) 203, 536
FauNDI CATATG 1 cut(s) 1315
FbaI TGATCA 1 cut(s) 1075
Fnu4HI GCNGC 7 cut(s) 86, 123, 144, 347, 394, 1048, 1058
FokI GGATG 3 cut(s) 418, 915, 1401
FriOI GRGCYC 3 cut(s) 339, 519, 876
Fsp4HI GCNGC 7 cut(s) 86, 123, 144, 347, 394, 1048, 1058
FspBI CTAG 1 cut(s) 299
GlaI GCGC 4 cut(s) 126, 392, 1385, 1448
GluI GCNGC 7 cut(s) 86, 123, 144, 347, 394, 1048, 1058
GsaI CCCAGC 1 cut(s) 1047
HaeII RGCGCY 1 cut(s) 128
HaeIII GGCC 3 cut(s) 107, 143, 396
HgaI GACGC 3 cut(s) 365, 636, 653
HhaI GCGC 4 cut(s) 127, 393, 1386, 1449
Hin1I GRCGYC 2 cut(s) 306, 376
Hin1II CATG 6 cut(s) 391, 460, 718, 836, 962, 1028
Hin6I GCGC 4 cut(s) 125, 391, 1384, 1447
HinP1I GCGC 4 cut(s) 125, 391, 1384, 1447
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 8 cut(s) 440, 522, 670, 682, 828, 952, 1035, 1194
HphI GGTGA 8 cut(s) 57, 178, 497, 875, 947, 1070, 1189, 1414
Hpy166II GTNNAC 4 cut(s) 15, 489, 1020, 1237
Hpy8I GTNNAC 4 cut(s) 15, 489, 1020, 1237
HpyAV CCTTC 2 cut(s) 346, 754
HpyCH4III ACNGT 3 cut(s) 190, 914, 1354
HpyCH4IV ACGT 4 cut(s) 306, 360, 399, 1233
HpyCH4V TGCA 3 cut(s) 202, 840, 1057
HpyF10VI GCNNNNNNNGC 8 cut(s) 85, 113, 122, 343, 373, 1168, 1390, 1520
HpyF3I CTNAG 6 cut(s) 231, 293, 632, 846, 1490, 1515
HpySE526I ACGT 4 cut(s) 306, 360, 399, 1233
Hsp92I GRCGYC 2 cut(s) 306, 376
Hsp92II CATG 6 cut(s) 391, 460, 718, 836, 962, 1028
HspAI GCGC 4 cut(s) 125, 391, 1384, 1447
Kpn2I TCCGGA 1 cut(s) 379
KpnI GGTACC 2 cut(s) 802, 1445
KroI GCCGGC 2 cut(s) 75, 1449
KroNI GCCGGC 2 cut(s) 77, 1451
Ksp22I TGATCA 1 cut(s) 1075
Kzo9I GATC 9 cut(s) 62, 132, 453, 823, 973, 1061, 1075, 1163, 1370
LmnI GCTCC 5 cut(s) 223, 276, 289, 522, 1520
Lsp1109I GCAGC 3 cut(s) 358, 1059, 1069
MaeI CTAG 1 cut(s) 299
MaeII ACGT 4 cut(s) 306, 360, 399, 1233
MaeIII GTNAC 6 cut(s) 503, 683, 902, 1151, 1287, 1478
MalI GATC 9 cut(s) 64, 134, 455, 825, 975, 1063, 1077, 1165, 1372
MboI GATC 9 cut(s) 62, 132, 453, 823, 973, 1061, 1075, 1163, 1370
MboII GAAGA 8 cut(s) 275, 281, 437, 440, 908, 915, 1120, 1261
MflI RGATCY 1 cut(s) 973
MhlI GDGCHC 3 cut(s) 339, 519, 876
MluCI AATT 7 cut(s) 55, 534, 774, 1211, 1398, 1484, 1540
MluI ACGCGT 1 cut(s) 645
MlyI GAGTC 5 cut(s) 449, 679, 691, 822, 1029
MmeI TCCRAC 3 cut(s) 630, 1063, 1483
MroI TCCGGA 1 cut(s) 379
MroNI GCCGGC 2 cut(s) 75, 1449
MseI TTAA 3 cut(s) 863, 992, 1545
MspA1I CMGCKG 1 cut(s) 349
MspR9I CCNGG 6 cut(s) 95, 325, 334, 876, 987, 1375
MssI GTTTAAAC 1 cut(s) 993
MvaI CCWGG 2 cut(s) 95, 987
MvnI CGCG 4 cut(s) 146, 393, 647, 1447
MwoI GCNNNNNNNGC 8 cut(s) 85, 113, 122, 343, 373, 1168, 1390, 1520
NaeI GCCGGC 2 cut(s) 77, 1451
NciI CCSGG 4 cut(s) 325, 334, 876, 1375
NcoI CCATGG 1 cut(s) 714
NdeI CATATG 1 cut(s) 1315
NdeII GATC 9 cut(s) 62, 132, 453, 823, 973, 1061, 1075, 1163, 1370
NgoMIV GCCGGC 2 cut(s) 75, 1449
NlaIII CATG 6 cut(s) 391, 460, 718, 836, 962, 1028
NlaIV GGNNCC 8 cut(s) 213, 219, 482, 518, 800, 858, 975, 1443
NmuCI GTSAC 5 cut(s) 503, 683, 1151, 1287, 1478
NspI RCATGY 2 cut(s) 391, 1028
PaeR7I CTCGAG 3 cut(s) 475, 791, 1157
PcsI WCGNNNNNNNCGW 2 cut(s) 449, 506
PdiI GCCGGC 2 cut(s) 77, 1451
PfeI GAWTC 3 cut(s) 522, 952, 1194
PflFI GACNNNGTC 1 cut(s) 305
PflMI CCANNNNNTGG 1 cut(s) 1431
PkrI GCNGC 7 cut(s) 87, 124, 145, 348, 395, 1049, 1059
PleI GAGTC 5 cut(s) 448, 678, 690, 822, 1029
PmeI GTTTAAAC 1 cut(s) 993
PpsI GAGTC 5 cut(s) 448, 678, 690, 822, 1029
Psp6I CCWGG 2 cut(s) 93, 985
PspEI GGTNACC 1 cut(s) 503
PspFI CCCAGC 1 cut(s) 1043
PspGI CCWGG 2 cut(s) 93, 985
PspN4I GGNNCC 8 cut(s) 213, 219, 482, 518, 800, 858, 975, 1443
PspPI GGNCC 1 cut(s) 1120
PspXI VCTCGAGB 1 cut(s) 1157
PsuI RGATCY 1 cut(s) 973
PsyI GACNNNGTC 1 cut(s) 305
RsaI GTAC 7 cut(s) 236, 359, 488, 800, 890, 1238, 1443
RsaNI GTAC 7 cut(s) 235, 358, 487, 799, 889, 1237, 1442
SaqAI TTAA 3 cut(s) 863, 992, 1545
SatI GCNGC 7 cut(s) 86, 123, 144, 347, 394, 1048, 1058
Sau3AI GATC 9 cut(s) 62, 132, 453, 823, 973, 1061, 1075, 1163, 1370
Sau96I GGNCC 1 cut(s) 1120
SchI GAGTC 5 cut(s) 449, 679, 691, 822, 1029
ScrFI CCNGG 6 cut(s) 95, 325, 334, 876, 987, 1375
SduI GDGCHC 3 cut(s) 339, 519, 876
Sfr274I CTCGAG 3 cut(s) 475, 791, 1157
SinI GGWCC 1 cut(s) 1120
SlaI CTCGAG 3 cut(s) 475, 791, 1157
SmlI CTYRAG 3 cut(s) 475, 791, 1157
SmoI CTYRAG 3 cut(s) 475, 791, 1157
Sse9I AATT 7 cut(s) 55, 534, 774, 1211, 1398, 1484, 1540
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 6 cut(s) 93, 323, 332, 874, 985, 1373
StyI CCWWGG 1 cut(s) 714
TaaI ACNGT 3 cut(s) 190, 914, 1354
TaiI ACGT 4 cut(s) 309, 363, 402, 1236
TaqI TCGA 5 cut(s) 476, 792, 826, 950, 1158
TasI AATT 7 cut(s) 55, 534, 774, 1211, 1398, 1484, 1540
TatI WGTACW 1 cut(s) 1236
TauI GCSGC 4 cut(s) 88, 125, 146, 396
TfiI GAWTC 3 cut(s) 522, 952, 1194
Tru1I TTAA 3 cut(s) 863, 992, 1545
Tru9I TTAA 3 cut(s) 863, 992, 1545
TseFI GTSAC 5 cut(s) 503, 683, 1151, 1287, 1478
TseI GCWGC 3 cut(s) 346, 1047, 1057
Tsp45I GTSAC 5 cut(s) 503, 683, 1151, 1287, 1478
TspDTI ATGAA 3 cut(s) 1224, 1302, 1403
TspGWI ACGGA 2 cut(s) 168, 210
Tth111I GACNNNGTC 1 cut(s) 305
Van91I CCANNNNNTGG 1 cut(s) 1431
VpaK11BI GGWCC 1 cut(s) 1120
XapI RAATTY 4 cut(s) 774, 1211, 1398, 1484
XceI RCATGY 2 cut(s) 391, 1028
XhoI CTCGAG 3 cut(s) 475, 791, 1157
XspI CTAG 1 cut(s) 299
ZraI GACGTC 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.