Rorug04G0280800
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000389
Physical Location & Seq
Reverse (-)
45456178 .. 45458085
1908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0280800.1

Sequence Viewer

Length: 699 bp
ATGGACGTGACACCCAAGCCCGGAGTTCCCTACCGCGGGATGACCGACACGTGGCTGAAGAAGCACACTTTGATCTACACCGGAGCCACCCGACACCCTTTTATCCTCGCCATTCGCGACGGCACCGTCGACATCTCCGCCTTCAAACGGTGGCTGAGCCAGGACTACATATTTGTGAGAGCTTTTGTGCCGTTTGTGGCGAGCTTGGTGGTGAAAGCTTGGAAGAAGTCTGATGATAGTCATGGTGATGTGGAAGTGATACTGAGTGGGCTTGCTGCTTTGAACGATGAGATTGACTGGTTCAAGAAACAAGCCTCCAAATGGGGTGTTGATCTCTCTGTTGTTGCTCCTCAAAAGCCTACCCAGGATTACTGCAGATTTCTGGAGAATTTAACTAGTCCTGAGGTTGATTACACAGTGGGCATGACGGCCTATTGGGCCATTGAAGCTGTGTACCAAGAGAGCTTTGCCCATTGCCTGGGGGAGGGCTCCAAAACCCCACCGGAACTAGAAGAGGTTTGTCAAAGATGGGGCAATGATGGCTTCGGTAACTACTGTTCTGCTCTCCGAAGCATTGCTGACCGGCGTTTGTTGAAGGCCACAGATGATGAGGTGAGTAAAGCTGAAGTGACATTCCTGCGTGTTCTTGAATATGAGGTTGAGTTCTGGAACATGAGCCGTGGGATTCCTGGGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

232

Amino Acids

26.32

Weight (kDa)

5.31

Isoelectric Point (pI)

32.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TENA_THI-4 PF03070 20 - 227 3.8e-40 TENA/THI-4/PQQC family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 125
AccB1I GGYRCC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 478
AccI GTMKAC 1 cut(s) 129
AccII CGCG 2 cut(s) 36, 117
AciI CCGC 3 cut(s) 34, 36, 138
AcsI RAATTY 1 cut(s) 388
AcuI CTGAAG 2 cut(s) 77, 645
AcvI CACGTG 1 cut(s) 51
AfaI GTAC 2 cut(s) 455, 695
AfiI CCNNNNNNNGG 8 cut(s) 20, 35, 36, 51, 147, 321, 478, 484
AflIII ACRYGT 1 cut(s) 48
AgsI TTSAA 6 cut(s) 145, 283, 304, 446, 595, 650
AhlI ACTAGT 1 cut(s) 395
AjiI CACGTC 1 cut(s) 7
AjnI CCWGG 4 cut(s) 159, 363, 477, 688
AluBI AGCT 6 cut(s) 182, 204, 218, 449, 465, 623
AluI AGCT 6 cut(s) 182, 204, 218, 449, 465, 623
AoxI GGCC 3 cut(s) 429, 438, 597
ApeKI GCWGC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 388
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AspS9I GGNCC 1 cut(s) 438
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 3 cut(s) 223, 257, 625
AxyI CCTNAGG 1 cut(s) 402
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 491
BbrPI CACGTG 1 cut(s) 51
BbvI GCAGC 1 cut(s) 262
BccI CCATC 2 cut(s) 522, 533
BceAI ACGGC 4 cut(s) 136, 175, 444, 663
BciT130I CCWGG 4 cut(s) 161, 365, 479, 690
BcnI CCSGG 1 cut(s) 21
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 3 cut(s) 396, 509, 697
BfmI CTRYAG 1 cut(s) 373
BglI GCCNNNNNGGC 1 cut(s) 437
BisI GCNGC 1 cut(s) 276
BlpI GCTNAGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 277
Bme1390I CCNGG 5 cut(s) 21, 161, 365, 479, 690
BmgBI CACGTC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 438
BmiI GGNNCC 3 cut(s) 85, 124, 490
BmrFI CCNGG 5 cut(s) 21, 161, 365, 479, 690
BpmI CTGGAG 1 cut(s) 404
Bpu1102I GCTNAGC 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 21
BsaAI YACGTR 1 cut(s) 51
BsaJI CCNNGG 5 cut(s) 34, 363, 478, 679, 689
BsaWI WCCGGW 2 cut(s) 80, 502
Bsc4I CCNNNNNNNGG 8 cut(s) 20, 35, 36, 51, 147, 321, 478, 484
Bse118I RCCGGY 1 cut(s) 582
Bse1I ACTGG 1 cut(s) 302
Bse21I CCTNAGG 1 cut(s) 402
Bse3DI GCAATG 3 cut(s) 472, 541, 573
BseBI CCWGG 4 cut(s) 161, 365, 479, 690
BseDI CCNNGG 5 cut(s) 34, 363, 478, 679, 689
BseGI GGATG 1 cut(s) 45
BseLI CCNNNNNNNGG 8 cut(s) 20, 35, 36, 51, 147, 321, 478, 484
BseMI GCAATG 3 cut(s) 472, 541, 573
BseMII CTCAG 3 cut(s) 146, 254, 393
BseNI ACTGG 1 cut(s) 302
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 1 cut(s) 262
Bsh1236I CGCG 2 cut(s) 36, 117
BshFI GGCC 3 cut(s) 431, 440, 599
BshNI GGYRCC 1 cut(s) 122
BsiSI CCGG 4 cut(s) 21, 81, 503, 583
BslI CCNNNNNNNGG 8 cut(s) 20, 35, 36, 51, 147, 321, 478, 484
BsnI GGCC 3 cut(s) 431, 440, 599
Bsp1286I GDGCHC 1 cut(s) 491
Bsp143I GATC 2 cut(s) 72, 331
Bsp1720I GCTNAGC 1 cut(s) 155
Bsp68I TCGCGA 1 cut(s) 117
BspACI CCGC 3 cut(s) 34, 36, 138
BspANI GGCC 3 cut(s) 431, 440, 599
BspCNI CTCAG 3 cut(s) 147, 255, 394
BspFNI CGCG 2 cut(s) 36, 117
BspLI GGNNCC 3 cut(s) 85, 124, 490
BspMAI CTGCAG 1 cut(s) 377
BspT107I GGYRCC 1 cut(s) 122
BsrDI GCAATG 3 cut(s) 472, 541, 573
BsrFI RCCGGY 1 cut(s) 582
BsrI ACTGG 1 cut(s) 302
BssAI RCCGGY 1 cut(s) 582
BssECI CCNNGG 5 cut(s) 34, 363, 478, 679, 689
BssMI GATC 2 cut(s) 72, 331
Bst2UI CCWGG 4 cut(s) 161, 365, 479, 690
Bst4CI ACNGT 4 cut(s) 127, 150, 418, 557
Bst6I CTCTTC 1 cut(s) 507
BstBAI YACGTR 1 cut(s) 51
BstC8I GCNNGC 2 cut(s) 202, 273
BstDEI CTNAG 3 cut(s) 155, 263, 402
BstDSI CCRYGG 2 cut(s) 34, 679
BstENI CCTNNNNNAGG 1 cut(s) 482
BstF5I GGATG 1 cut(s) 45
BstFNI CGCG 2 cut(s) 36, 117
BstKTI GATC 2 cut(s) 75, 334
BstMBI GATC 2 cut(s) 72, 331
BstMWI GCNNNNNNNGC 4 cut(s) 61, 437, 446, 540
BstNI CCWGG 4 cut(s) 161, 365, 479, 690
BstSCI CCNGG 5 cut(s) 19, 159, 363, 477, 688
BstSFI CTRYAG 1 cut(s) 373
BstUI CGCG 2 cut(s) 36, 117
BstV1I GCAGC 1 cut(s) 262
Bsu36I CCTNAGG 1 cut(s) 402
BsuRI GGCC 3 cut(s) 431, 440, 599
BtgI CCRYGG 2 cut(s) 34, 679
BtrI CACGTC 1 cut(s) 7
BtsCI GGATG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 423
BtuMI TCGCGA 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 202, 273
Cfr10I RCCGGY 1 cut(s) 582
Cfr13I GGNCC 1 cut(s) 438
Cfr42I CCGCGG 1 cut(s) 37
Csp6I GTAC 2 cut(s) 454, 694
CviAII CATG 3 cut(s) 242, 424, 673
CviQI GTAC 2 cut(s) 454, 694
DdeI CTNAG 3 cut(s) 155, 263, 402
DpnI GATC 2 cut(s) 74, 333
DpnII GATC 2 cut(s) 72, 331
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
EciI GGCGGA 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 491
Eco57I CTGAAG 2 cut(s) 77, 645
Eco72I CACGTG 1 cut(s) 51
Eco81I CCTNAGG 1 cut(s) 402
EcoNI CCTNNNNNAGG 1 cut(s) 482
EcoRII CCWGG 4 cut(s) 159, 363, 477, 688
EcoT38I GRGCYC 1 cut(s) 491
FaeI CATG 3 cut(s) 245, 427, 676
FaiI YATR 5 cut(s) 170, 243, 425, 654, 674
FatI CATG 3 cut(s) 241, 423, 672
FauI CCCGC 1 cut(s) 29
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 1 cut(s) 52
FriOI GRGCYC 1 cut(s) 491
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 3 cut(s) 396, 509, 697
GluI GCNGC 1 cut(s) 276
GsuI CTGGAG 1 cut(s) 404
HaeIII GGCC 3 cut(s) 431, 440, 599
HapII CCGG 4 cut(s) 21, 81, 503, 583
Hin1II CATG 3 cut(s) 245, 427, 676
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 216
HinfI GANTC 1 cut(s) 685
HpaII CCGG 4 cut(s) 21, 81, 503, 583
HphI GGTGA 3 cut(s) 223, 257, 625
Hpy166II GTNNAC 2 cut(s) 130, 454
Hpy188I TCNGA 2 cut(s) 232, 569
Hpy188III TCNNGA 6 cut(s) 116, 304, 383, 401, 647, 667
Hpy8I GTNNAC 2 cut(s) 130, 454
Hpy99I CGWCG 2 cut(s) 122, 131
HpyAV CCTTC 2 cut(s) 151, 589
HpyCH4III ACNGT 4 cut(s) 127, 150, 418, 557
HpyCH4IV ACGT 2 cut(s) 6, 50
HpyCH4V TGCA 1 cut(s) 375
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 437, 446, 540
HpyF3I CTNAG 3 cut(s) 155, 263, 402
HpySE526I ACGT 2 cut(s) 6, 50
Hsp92II CATG 3 cut(s) 245, 427, 676
KspI CCGCGG 1 cut(s) 37
Kzo9I GATC 2 cut(s) 72, 331
LmnI GCTCC 3 cut(s) 83, 352, 494
Lsp1109I GCAGC 1 cut(s) 262
MaeI CTAG 3 cut(s) 396, 509, 697
MaeII ACGT 2 cut(s) 6, 50
MaeIII GTNAC 3 cut(s) 7, 548, 628
MalI GATC 2 cut(s) 74, 333
MboI GATC 2 cut(s) 72, 331
MboII GAAGA 3 cut(s) 70, 235, 524
MhlI GDGCHC 1 cut(s) 491
MluCI AATT 1 cut(s) 388
MnlI CCTC 8 cut(s) 116, 325, 360, 397, 478, 508, 604, 649
MseI TTAA 1 cut(s) 392
MslI CAYNNNNRTG 2 cut(s) 173, 246
MspA1I CMGCKG 1 cut(s) 36
MspI CCGG 4 cut(s) 21, 81, 503, 583
MspR9I CCNGG 5 cut(s) 21, 161, 365, 479, 690
MvaI CCWGG 4 cut(s) 161, 365, 479, 690
MvnI CGCG 2 cut(s) 36, 117
MwoI GCNNNNNNNGC 4 cut(s) 61, 437, 446, 540
NciI CCSGG 1 cut(s) 21
NdeII GATC 2 cut(s) 72, 331
NlaIII CATG 3 cut(s) 245, 427, 676
NlaIV GGNNCC 3 cut(s) 85, 124, 490
NmuCI GTSAC 2 cut(s) 7, 628
NruI TCGCGA 1 cut(s) 117
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 126
PfeI GAWTC 1 cut(s) 685
PflMI CCANNNNNTGG 1 cut(s) 478
PkrI GCNGC 1 cut(s) 277
PmaCI CACGTG 1 cut(s) 51
PmlI CACGTG 1 cut(s) 51
Ppu21I YACGTR 1 cut(s) 51
Psp6I CCWGG 4 cut(s) 159, 363, 477, 688
PspCI CACGTG 1 cut(s) 51
PspGI CCWGG 4 cut(s) 159, 363, 477, 688
PspN4I GGNNCC 3 cut(s) 85, 124, 490
PspPI GGNCC 1 cut(s) 438
PsrI GAACNNNNNNTAC 2 cut(s) 541, 573
PstI CTGCAG 1 cut(s) 377
RruI TCGCGA 1 cut(s) 117
RsaI GTAC 2 cut(s) 455, 695
RsaNI GTAC 2 cut(s) 454, 694
RseI CAYNNNNRTG 2 cut(s) 173, 246
SacII CCGCGG 1 cut(s) 37
SalI GTCGAC 1 cut(s) 128
SaqAI TTAA 1 cut(s) 392
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 2 cut(s) 72, 331
Sau96I GGNCC 1 cut(s) 438
ScrFI CCNGG 5 cut(s) 21, 161, 365, 479, 690
SduI GDGCHC 1 cut(s) 491
SfcI CTRYAG 1 cut(s) 373
SfiI GGCCNNNNNGGCC 1 cut(s) 437
Sfr303I CCGCGG 1 cut(s) 37
SgrBI CCGCGG 1 cut(s) 37
SmiMI CAYNNNNRTG 2 cut(s) 173, 246
SpeI ACTAGT 1 cut(s) 395
Sse9I AATT 1 cut(s) 388
SsiI CCGC 3 cut(s) 34, 36, 138
SspMI CTAG 3 cut(s) 396, 509, 697
StyD4I CCNGG 5 cut(s) 19, 159, 363, 477, 688
TaaI ACNGT 4 cut(s) 127, 150, 418, 557
TaiI ACGT 2 cut(s) 9, 53
TaqI TCGA 1 cut(s) 129
TaqII GACCGA 1 cut(s) 59
TasI AATT 1 cut(s) 388
TfiI GAWTC 1 cut(s) 685
Tru1I TTAA 1 cut(s) 392
Tru9I TTAA 1 cut(s) 392
TscAI CASTG 1 cut(s) 423
TseFI GTSAC 2 cut(s) 7, 628
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 2 cut(s) 7, 628
TspRI CASTG 1 cut(s) 423
Van91I CCANNNNNTGG 1 cut(s) 478
XagI CCTNNNNNAGG 1 cut(s) 482
XapI RAATTY 1 cut(s) 388
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 3 cut(s) 396, 509, 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.