RchiOBHm_Chr7g0205071
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000389
Physical Location & Seq
Forward (+)
22725340 .. 22739473
14134 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18352

Sequence Viewer

Length: 873 bp
ATGTATAACCGTGCCTGCATTATTGGCCGTCCGATTGCGGCCACGCCCGTTTCTTTTTTGGGGAAACAATTCTTTCCTTTTTTAGGCGTTTACTATTTCACCTCCATTTCCGCTTGCTGTCAACTCTGGCGAGACCCAAAGCTTCAGTTTCTGCACCACGAAGCAATAATTGAGCAGCTAGCTGCTATGAATAAGATAAAGATTGAGAAGATAGAGAACTTGCCGGCGAGGCAGGTGACGTTTTCAAAGAGGAGACAAGGGCTTTTCAAGAAAGCCGGAGAGTTATCAGTTCTCTGCGACGCTGAGGTTGCTGTCGTTGTCGTTTCTTCTACTGGCAAGCTCTATGAGTCCTCCAGCTCCAGTACGAAGGATGTCATTGCAAGGTACGAATTGCACACTGAAGAAGTGGAAAAGGGCGACCAGCAGCCACCTCCTGAGCTCCAGCTGGAGATTAATGAGTGGATGAGGTTGAATAAGGAACTTGCGGACAAGATCCTCGAGCTAAGGCGGATGGAGGGGCAGGATCTAGAAGAGCTGAATATAGATGAATTGCAAAGATTGGAGAATAGGATTGAAGGAGGACTCAGCAGTGTGCTTCAAACGAAGGATAAAAGGATTATGAGTCAGATTCTGGCACTTGAAACAAAGGTAGCAGAGTTGACAGAAGCAAACAACCAATTAAGGCAGAGGGTAAATAAGTTACGGATGCTATCCAATGGAAATGAAAATAGAACTGGTGGTGTTGCTTTGGAGTCGGAGATCTCAACTGATGAAGAAGAAAGTATGGCATCGGAATCTGCCACAGGTTCCACCGGCTGCTACAGTACTGGTTACCCCTTATCTCTCAAACTTGGGCTTTCTCGCTGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

290

Amino Acids

32.56

Weight (kDa)

5.52

Isoelectric Point (pI)

60.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 70 - 116 1.4e-24 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 152 - 231 1.1e-13 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 223
Acc36I ACCTGC 1 cut(s) 223
AciI CCGC 4 cut(s) 38, 111, 485, 508
AclWI GGATC 2 cut(s) 487, 531
AcoI YGGCCR 2 cut(s) 25, 39
AcuI CTGAAG 2 cut(s) 128, 420
AfaI GTAC 3 cut(s) 364, 386, 826
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 6 cut(s) 246, 268, 472, 575, 599, 641
AluBI AGCT 9 cut(s) 142, 178, 182, 340, 357, 439, 445, 502, 535
AluI AGCT 9 cut(s) 142, 178, 182, 340, 357, 439, 445, 502, 535
Alw21I GWGCWC 1 cut(s) 441
Alw26I GTCTC 2 cut(s) 126, 247
AlwI GGATC 2 cut(s) 487, 531
AlwNI CAGNNNCTG 2 cut(s) 151, 631
Ama87I CYCGRG 1 cut(s) 497
AoxI GGCC 2 cut(s) 25, 39
ApeKI GCWGC 4 cut(s) 175, 182, 424, 816
AseI ATTAAT 1 cut(s) 453
Asp700I GAANNNNTTC 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 91, 247
AsuNHI GCTAGC 1 cut(s) 178
AvaI CYCGRG 1 cut(s) 497
BanII GRGCYC 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 441
BbvCI CCTCAGC 1 cut(s) 303
BbvI GCAGC 4 cut(s) 169, 187, 436, 803
BccI CCATC 1 cut(s) 505
BceAI ACGGC 1 cut(s) 12
BcoDI GTCTC 2 cut(s) 126, 247
BfaI CTAG 2 cut(s) 179, 527
BfmI CTRYAG 1 cut(s) 820
BfuAI ACCTGC 1 cut(s) 223
BglI GCCNNNNNGGC 1 cut(s) 229
BglII AGATCT 1 cut(s) 759
BisI GCNGC 5 cut(s) 39, 176, 183, 425, 817
BlsI GCNGC 5 cut(s) 40, 177, 184, 426, 818
BmcAI AGTACT 1 cut(s) 826
BmeT110I CYCGRG 1 cut(s) 497
BmiI GGNNCC 1 cut(s) 808
BmsI GCATC 2 cut(s) 696, 797
BmtI GCTAGC 1 cut(s) 182
BpmI CTGGAG 4 cut(s) 337, 343, 425, 467
Bpu10I CCTNAGC 3 cut(s) 303, 435, 503
BsaI GGTCTC 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse118I RCCGGY 2 cut(s) 223, 812
Bse1I ACTGG 4 cut(s) 337, 360, 739, 832
Bse3DI GCAATG 1 cut(s) 375
BseGI GGATG 4 cut(s) 376, 468, 516, 711
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 3 cut(s) 294, 426, 598
BseNI ACTGG 4 cut(s) 337, 360, 739, 832
BseRI GAGGAG 1 cut(s) 265
BseXI GCAGC 4 cut(s) 169, 187, 436, 803
BsgI GTGCAG 1 cut(s) 137
BshFI GGCC 2 cut(s) 27, 41
BsiHKAI GWGCWC 1 cut(s) 441
BsiHKCI CYCGRG 1 cut(s) 497
BsiSI CCGG 3 cut(s) 224, 276, 813
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 2 cut(s) 126, 247
BsnI GGCC 2 cut(s) 27, 41
Bso31I GGTCTC 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 497
Bsp1286I GDGCHC 1 cut(s) 441
Bsp143I GATC 3 cut(s) 492, 523, 759
BspACI CCGC 4 cut(s) 38, 111, 485, 508
BspANI GGCC 2 cut(s) 27, 41
BspCNI CTCAG 3 cut(s) 295, 427, 597
BspLI GGNNCC 1 cut(s) 808
BspMI ACCTGC 1 cut(s) 223
BspOI GCTAGC 1 cut(s) 182
BspPI GGATC 2 cut(s) 487, 531
BspQI GCTCTTC 1 cut(s) 525
BspTNI GGTCTC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 375
BsrFI RCCGGY 2 cut(s) 223, 812
BsrI ACTGG 4 cut(s) 337, 360, 739, 832
BssAI RCCGGY 2 cut(s) 223, 812
BssMI GATC 3 cut(s) 492, 523, 759
Bst4CI ACNGT 2 cut(s) 11, 824
Bst6I CTCTTC 1 cut(s) 525
BstC8I GCNNGC 5 cut(s) 16, 115, 180, 225, 338
BstDEI CTNAG 4 cut(s) 303, 435, 503, 584
BstEII GGTNACC 1 cut(s) 830
BstENI CCTNNNNNAGG 1 cut(s) 81
BstF5I GGATG 4 cut(s) 376, 468, 516, 711
BstKTI GATC 3 cut(s) 495, 526, 762
BstMAI GTCTC 2 cut(s) 126, 247
BstMBI GATC 3 cut(s) 492, 523, 759
BstMWI GCNNNNNNNGC 3 cut(s) 24, 229, 308
BstPI GGTNACC 1 cut(s) 830
BstSFI CTRYAG 1 cut(s) 820
BstV1I GCAGC 4 cut(s) 169, 187, 436, 803
BstX2I RGATCY 3 cut(s) 492, 523, 759
BstYI RGATCY 3 cut(s) 492, 523, 759
BsuRI GGCC 2 cut(s) 27, 41
BtsCI GGATG 4 cut(s) 376, 468, 516, 711
BtsI GCAGTG 1 cut(s) 595
BtsIMutI CAGTG 2 cut(s) 396, 595
BveI ACCTGC 1 cut(s) 223
Cac8I GCNNGC 5 cut(s) 16, 115, 180, 225, 338
CaiI CAGNNNCTG 2 cut(s) 151, 631
Cfr10I RCCGGY 2 cut(s) 223, 812
CseI GACGC 1 cut(s) 308
Csp6I GTAC 3 cut(s) 363, 385, 825
CviQI GTAC 3 cut(s) 363, 385, 825
DdeI CTNAG 4 cut(s) 303, 435, 503, 584
DpnI GATC 3 cut(s) 494, 525, 761
DpnII GATC 3 cut(s) 492, 523, 759
EaeI YGGCCR 2 cut(s) 25, 39
Eam1104I CTCTTC 1 cut(s) 525
EarI CTCTTC 1 cut(s) 525
EciI GGCGGA 1 cut(s) 523
Ecl136II GAGCTC 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 441
Eco31I GGTCTC 1 cut(s) 126
Eco53kI GAGCTC 1 cut(s) 439
Eco57I CTGAAG 2 cut(s) 128, 420
Eco88I CYCGRG 1 cut(s) 497
Eco91I GGTNACC 1 cut(s) 830
EcoICRI GAGCTC 1 cut(s) 439
EcoNI CCTNNNNNAGG 1 cut(s) 81
EcoO65I GGTNACC 1 cut(s) 830
EcoT38I GRGCYC 1 cut(s) 441
FaiI YATR 6 cut(s) 6, 188, 345, 542, 620, 785
Fnu4HI GCNGC 5 cut(s) 39, 176, 183, 425, 817
FokI GGATG 4 cut(s) 383, 475, 523, 718
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 5 cut(s) 39, 176, 183, 425, 817
FspBI CTAG 2 cut(s) 179, 527
GluI GCNGC 5 cut(s) 39, 176, 183, 425, 817
GsuI CTGGAG 4 cut(s) 337, 343, 425, 467
HaeIII GGCC 2 cut(s) 27, 41
HapII CCGG 3 cut(s) 224, 276, 813
HgaI GACGC 1 cut(s) 308
HincII GTYRAC 2 cut(s) 122, 660
HindII GTYRAC 2 cut(s) 122, 660
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 6 cut(s) 347, 582, 622, 628, 752, 794
HpaII CCGG 3 cut(s) 224, 276, 813
HphI GGTGA 2 cut(s) 91, 247
Hpy166II GTNNAC 3 cut(s) 91, 122, 660
Hpy188I TCNGA 4 cut(s) 33, 627, 757, 793
Hpy188III TCNNGA 3 cut(s) 268, 434, 527
Hpy8I GTNNAC 3 cut(s) 91, 122, 660
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 3 cut(s) 361, 569, 598
HpyCH4III ACNGT 2 cut(s) 11, 824
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 5 cut(s) 18, 154, 380, 394, 553
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 229, 308
HpyF3I CTNAG 4 cut(s) 303, 435, 503, 584
HpySE526I ACGT 1 cut(s) 239
KroI GCCGGC 1 cut(s) 223
KroNI GCCGGC 1 cut(s) 225
Kzo9I GATC 3 cut(s) 492, 523, 759
LguI GCTCTTC 1 cut(s) 525
LmnI GCTCC 2 cut(s) 362, 444
Lsp1109I GCAGC 4 cut(s) 169, 187, 436, 803
LweI GCATC 2 cut(s) 696, 797
MaeI CTAG 2 cut(s) 179, 527
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 3 cut(s) 235, 699, 830
MalI GATC 3 cut(s) 494, 525, 761
MboI GATC 3 cut(s) 492, 523, 759
MboII GAAGA 6 cut(s) 220, 318, 413, 542, 785, 788
MflI RGATCY 3 cut(s) 492, 523, 759
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 5 cut(s) 68, 168, 389, 548, 677
MlyI GAGTC 4 cut(s) 356, 576, 631, 761
MmeI TCCRAC 1 cut(s) 735
MroNI GCCGGC 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 68
MseI TTAA 2 cut(s) 453, 680
MspA1I CMGCKG 1 cut(s) 445
MspI CCGG 3 cut(s) 224, 276, 813
MwoI GCNNNNNNNGC 3 cut(s) 24, 229, 308
NaeI GCCGGC 1 cut(s) 225
NdeII GATC 3 cut(s) 492, 523, 759
NgoMIV GCCGGC 1 cut(s) 223
NheI GCTAGC 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 808
NmuCI GTSAC 1 cut(s) 235
PaeR7I CTCGAG 1 cut(s) 497
PaqCI CACCTGC 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 525
PdiI GCCGGC 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 68
PfeI GAWTC 2 cut(s) 628, 794
PkrI GCNGC 5 cut(s) 40, 177, 184, 426, 818
PleI GAGTC 4 cut(s) 355, 576, 630, 760
PpsI GAGTC 4 cut(s) 355, 576, 630, 760
PshBI ATTAAT 1 cut(s) 453
Psp124BI GAGCTC 1 cut(s) 441
PspEI GGTNACC 1 cut(s) 830
PspN4I GGNNCC 1 cut(s) 808
PspXI VCTCGAGB 1 cut(s) 497
PstNI CAGNNNCTG 2 cut(s) 151, 631
PsuI RGATCY 3 cut(s) 492, 523, 759
PvuII CAGCTG 1 cut(s) 445
RsaI GTAC 3 cut(s) 364, 386, 826
RsaNI GTAC 3 cut(s) 363, 385, 825
SacI GAGCTC 1 cut(s) 441
SapI GCTCTTC 1 cut(s) 525
SaqAI TTAA 2 cut(s) 453, 680
SatI GCNGC 5 cut(s) 39, 176, 183, 425, 817
Sau3AI GATC 3 cut(s) 492, 523, 759
ScaI AGTACT 1 cut(s) 826
SchI GAGTC 4 cut(s) 356, 576, 631, 761
SduI GDGCHC 1 cut(s) 441
SfaNI GCATC 2 cut(s) 696, 797
SfcI CTRYAG 1 cut(s) 820
Sfr274I CTCGAG 1 cut(s) 497
SlaI CTCGAG 1 cut(s) 497
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
Sse9I AATT 5 cut(s) 68, 168, 389, 548, 677
SsiI CCGC 4 cut(s) 38, 111, 485, 508
SspMI CTAG 2 cut(s) 179, 527
SstI GAGCTC 1 cut(s) 441
TaaI ACNGT 2 cut(s) 11, 824
TaiI ACGT 1 cut(s) 242
TaqI TCGA 1 cut(s) 498
TasI AATT 5 cut(s) 68, 168, 389, 548, 677
TatI WGTACW 1 cut(s) 824
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 2 cut(s) 628, 794
Tru1I TTAA 2 cut(s) 453, 680
Tru9I TTAA 2 cut(s) 453, 680
TscAI CASTG 2 cut(s) 403, 595
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 4 cut(s) 175, 182, 424, 816
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 4 cut(s) 203, 561, 738, 786
TspGWI ACGGA 1 cut(s) 718
TspRI CASTG 2 cut(s) 403, 595
VspI ATTAAT 1 cut(s) 453
XagI CCTNNNNNAGG 1 cut(s) 81
XbaI TCTAGA 1 cut(s) 526
XhoI CTCGAG 1 cut(s) 497
XmnI GAANNNNTTC 1 cut(s) 68
XspI CTAG 2 cut(s) 179, 527
ZrmI AGTACT 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.