MADS-box protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| EF-hand_7 | PF13499 | 54 - 116 | 2.5e-14 | EF-hand domain pair |
| EF-hand_5 | PF13202 | 56 - 80 | 6.7e-07 | EF hand |
| EF-hand_8 | PF13833 | 68 - 117 | 5.9e-10 | EF-hand domain pair |
| EF-hand_7 | PF13499 | 128 - 190 | 1.8e-10 | EF-hand domain pair |
| EF-hand_8 | PF13833 | 142 - 190 | 2.8e-10 | EF-hand domain pair |
| EF-hand_1 | PF00036 | 165 - 190 | 1.2e-07 | EF hand domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 9, 74 |
| AciI | CCGC | 2 cut(s) | 281, 481 |
| AcoI | YGGCCR | 1 cut(s) | 282 |
| AcuI | CTGAAG | 1 cut(s) | 212 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 240 |
| AgsI | TTSAA | 2 cut(s) | 329, 451 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 522, 554 |
| AluBI | AGCT | 5 cut(s) | 35, 150, 166, 388, 447 |
| AluI | AGCT | 5 cut(s) | 35, 150, 166, 388, 447 |
| Alw21I | GWGCWC | 2 cut(s) | 168, 390 |
| Alw26I | GTCTC | 1 cut(s) | 357 |
| Ama87I | CYCGRG | 2 cut(s) | 167, 424 |
| AoxI | GGCC | 1 cut(s) | 282 |
| ApeKI | GCWGC | 5 cut(s) | 32, 52, 147, 156, 159 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 176 |
| AspLEI | GCGC | 3 cut(s) | 52, 126, 277 |
| AsuC2I | CCSGG | 1 cut(s) | 218 |
| AsuHPI | GGTGA | 1 cut(s) | 212 |
| AvaI | CYCGRG | 2 cut(s) | 167, 424 |
| BanII | GRGCYC | 3 cut(s) | 168, 390, 425 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 88, 120 |
| Bbv12I | GWGCWC | 2 cut(s) | 168, 390 |
| BbvI | GCAGC | 5 cut(s) | 44, 64, 159, 168, 171 |
| BccI | CCATC | 5 cut(s) | 299, 305, 340, 527, 562 |
| BceAI | ACGGC | 2 cut(s) | 78, 269 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 148, 182 |
| BcnI | CCSGG | 1 cut(s) | 218 |
| BcoDI | GTCTC | 1 cut(s) | 357 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 290 |
| BisI | GCNGC | 6 cut(s) | 33, 53, 148, 157, 160, 282 |
| BlsI | GCNGC | 6 cut(s) | 34, 54, 149, 158, 161, 283 |
| Bme1390I | CCNGG | 1 cut(s) | 218 |
| BmeT110I | CYCGRG | 2 cut(s) | 167, 424 |
| BmrFI | CCNGG | 1 cut(s) | 218 |
| BmsI | GCATC | 4 cut(s) | 306, 385, 419, 447 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 112, 144 |
| BpmI | CTGGAG | 1 cut(s) | 12 |
| BpuMI | CCSGG | 1 cut(s) | 218 |
| BsaJI | CCNNGG | 4 cut(s) | 78, 216, 264, 285 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 522, 552 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 240 |
| BseDI | CCNNGG | 4 cut(s) | 78, 216, 264, 285 |
| BseGI | GGATG | 6 cut(s) | 310, 316, 321, 411, 434, 462 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 240 |
| BseMII | CTCAG | 1 cut(s) | 403 |
| BseRI | GAGGAG | 2 cut(s) | 281, 383 |
| BseX3I | CGGCCG | 1 cut(s) | 282 |
| BseXI | GCAGC | 5 cut(s) | 44, 64, 159, 168, 171 |
| BseYI | CCCAGC | 2 cut(s) | 319, 460 |
| Bsh1285I | CGRYCG | 1 cut(s) | 285 |
| BshFI | GGCC | 1 cut(s) | 284 |
| BsiEI | CGRYCG | 1 cut(s) | 285 |
| BsiHKAI | GWGCWC | 2 cut(s) | 168, 390 |
| BsiHKCI | CYCGRG | 2 cut(s) | 167, 424 |
| BsiSI | CCGG | 1 cut(s) | 218 |
| BslFI | GGGAC | 1 cut(s) | 463 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 240 |
| BsmAI | GTCTC | 1 cut(s) | 357 |
| BsmBI | CGTCTC | 1 cut(s) | 357 |
| BsmFI | GGGAC | 1 cut(s) | 463 |
| BsmI | GAATGC | 1 cut(s) | 61 |
| BsnI | GGCC | 1 cut(s) | 284 |
| BsoBI | CYCGRG | 2 cut(s) | 167, 424 |
| Bsp1286I | GDGCHC | 3 cut(s) | 168, 390, 425 |
| BspACI | CCGC | 2 cut(s) | 281, 481 |
| BspANI | GGCC | 1 cut(s) | 284 |
| BspCNI | CTCAG | 1 cut(s) | 402 |
| BspHI | TCATGA | 1 cut(s) | 564 |
| BssECI | CCNNGG | 4 cut(s) | 78, 216, 264, 285 |
| BssT1I | CCWWGG | 1 cut(s) | 78 |
| Bst4CI | ACNGT | 4 cut(s) | 7, 200, 206, 247 |
| Bst6I | CTCTTC | 2 cut(s) | 324, 446 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 153 |
| BstC8I | GCNNGC | 3 cut(s) | 164, 279, 445 |
| BstDEI | CTNAG | 2 cut(s) | 69, 389 |
| BstDSI | CCRYGG | 1 cut(s) | 285 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 238 |
| BstF5I | GGATG | 6 cut(s) | 310, 316, 321, 411, 434, 462 |
| BstHHI | GCGC | 3 cut(s) | 52, 126, 277 |
| BstMAI | GTCTC | 1 cut(s) | 357 |
| BstMCI | CGRYCG | 1 cut(s) | 285 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 58, 153, 156, 281, 290, 429, 480 |
| BstNSI | RCATGY | 1 cut(s) | 517 |
| BstSCI | CCNGG | 1 cut(s) | 216 |
| BstV1I | GCAGC | 5 cut(s) | 44, 64, 159, 168, 171 |
| BstZI | CGGCCG | 1 cut(s) | 282 |
| BsuRI | GGCC | 1 cut(s) | 284 |
| BtgI | CCRYGG | 1 cut(s) | 285 |
| BtsCI | GGATG | 6 cut(s) | 310, 316, 321, 411, 434, 462 |
| Cac8I | GCNNGC | 3 cut(s) | 164, 279, 445 |
| CciI | TCATGA | 1 cut(s) | 564 |
| CfoI | GCGC | 3 cut(s) | 52, 126, 277 |
| CseI | GACGC | 1 cut(s) | 20 |
| CviAII | CATG | 4 cut(s) | 153, 514, 565, 573 |
| CviJI | RGCY | 9 cut(s) | 35, 150, 166, 284, 293, 353, 388, 423, 447 |
| CviKI_1 | RGCY | 9 cut(s) | 35, 150, 166, 284, 293, 353, 388, 423, 447 |
| DdeI | CTNAG | 2 cut(s) | 69, 389 |
| EaeI | YGGCCR | 1 cut(s) | 282 |
| EagI | CGGCCG | 1 cut(s) | 282 |
| Eam1104I | CTCTTC | 2 cut(s) | 324, 446 |
| EarI | CTCTTC | 2 cut(s) | 324, 446 |
| Ecl136II | GAGCTC | 2 cut(s) | 166, 388 |
| EclXI | CGGCCG | 1 cut(s) | 282 |
| Eco130I | CCWWGG | 1 cut(s) | 78 |
| Eco24I | GRGCYC | 3 cut(s) | 168, 390, 425 |
| Eco32I | GATATC | 1 cut(s) | 213 |
| Eco52I | CGGCCG | 1 cut(s) | 282 |
| Eco53kI | GAGCTC | 2 cut(s) | 166, 388 |
| Eco57I | CTGAAG | 1 cut(s) | 212 |
| Eco88I | CYCGRG | 2 cut(s) | 167, 424 |
| EcoICRI | GAGCTC | 2 cut(s) | 166, 388 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 238 |
| EcoRV | GATATC | 1 cut(s) | 213 |
| EcoT14I | CCWWGG | 1 cut(s) | 78 |
| EcoT22I | ATGCAT | 1 cut(s) | 434 |
| EcoT38I | GRGCYC | 3 cut(s) | 168, 390, 425 |
| ErhI | CCWWGG | 1 cut(s) | 78 |
| Esp3I | CGTCTC | 1 cut(s) | 357 |
| FaeI | CATG | 4 cut(s) | 156, 517, 568, 576 |
| FaiI | YATR | 8 cut(s) | 41, 154, 411, 434, 506, 515, 566, 574 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 62, 94 |
| FaqI | GGGAC | 1 cut(s) | 463 |
| FatI | CATG | 4 cut(s) | 152, 513, 564, 572 |
| FauI | CCCGC | 1 cut(s) | 488 |
| FblI | GTMKAC | 2 cut(s) | 9, 74 |
| Fnu4HI | GCNGC | 6 cut(s) | 33, 53, 148, 157, 160, 282 |
| FokI | GGATG | 6 cut(s) | 317, 323, 328, 418, 441, 469 |
| FriOI | GRGCYC | 3 cut(s) | 168, 390, 425 |
| Fsp4HI | GCNGC | 6 cut(s) | 33, 53, 148, 157, 160, 282 |
| GlaI | GCGC | 3 cut(s) | 51, 125, 276 |
| GluI | GCNGC | 6 cut(s) | 33, 53, 148, 157, 160, 282 |
| GsaI | CCCAGC | 2 cut(s) | 323, 464 |
| GsuI | CTGGAG | 1 cut(s) | 12 |
| HaeIII | GGCC | 1 cut(s) | 284 |
| HapII | CCGG | 1 cut(s) | 218 |
| HgaI | GACGC | 1 cut(s) | 20 |
| HhaI | GCGC | 3 cut(s) | 52, 126, 277 |
| Hin1II | CATG | 4 cut(s) | 156, 517, 568, 576 |
| Hin6I | GCGC | 3 cut(s) | 50, 124, 275 |
| HinP1I | GCGC | 3 cut(s) | 50, 124, 275 |
| HincII | GTYRAC | 2 cut(s) | 10, 75 |
| HindII | GTYRAC | 2 cut(s) | 10, 75 |
| HindIII | AAGCTT | 1 cut(s) | 445 |
| HinfI | GANTC | 5 cut(s) | 25, 136, 476, 508, 561 |
| HpaII | CCGG | 1 cut(s) | 218 |
| HphI | GGTGA | 1 cut(s) | 212 |
| Hpy166II | GTNNAC | 2 cut(s) | 10, 75 |
| Hpy188I | TCNGA | 6 cut(s) | 231, 251, 265, 298, 392, 560 |
| Hpy188III | TCNNGA | 5 cut(s) | 108, 169, 337, 426, 565 |
| Hpy8I | GTNNAC | 2 cut(s) | 10, 75 |
| Hpy99I | CGWCG | 1 cut(s) | 14 |
| HpyAV | CCTTC | 2 cut(s) | 40, 166 |
| HpyCH4III | ACNGT | 4 cut(s) | 7, 200, 206, 247 |
| HpyCH4V | TGCA | 3 cut(s) | 156, 432, 498 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 58, 153, 156, 281, 290, 429, 480 |
| HpyF3I | CTNAG | 2 cut(s) | 69, 389 |
| Hsp92II | CATG | 4 cut(s) | 156, 517, 568, 576 |
| HspAI | GCGC | 3 cut(s) | 50, 124, 275 |
| LpnPI | CCDG | 7 cut(s) | 42, 231, 247, 305, 350, 446, 453 |
| Lsp1109I | GCAGC | 5 cut(s) | 44, 64, 159, 168, 171 |
| LweI | GCATC | 4 cut(s) | 306, 385, 419, 447 |
| MaeIII | GTNAC | 1 cut(s) | 200 |
| MboII | GAAGA | 3 cut(s) | 96, 341, 463 |
| MhlI | GDGCHC | 3 cut(s) | 168, 390, 425 |
| MluCI | AATT | 2 cut(s) | 98, 257 |
| MlyI | GAGTC | 3 cut(s) | 19, 145, 485 |
| MmeI | TCCRAC | 2 cut(s) | 164, 229 |
| Mph1103I | ATGCAT | 1 cut(s) | 434 |
| MroXI | GAANNNNTTC | 1 cut(s) | 176 |
| MspI | CCGG | 1 cut(s) | 218 |
| MspR9I | CCNGG | 1 cut(s) | 218 |
| Mva1269I | GAATGC | 1 cut(s) | 61 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 58, 153, 156, 281, 290, 429, 480 |
| NciI | CCSGG | 1 cut(s) | 218 |
| NlaIII | CATG | 4 cut(s) | 156, 517, 568, 576 |
| NmuCI | GTSAC | 1 cut(s) | 200 |
| NsiI | ATGCAT | 1 cut(s) | 434 |
| NspI | RCATGY | 1 cut(s) | 517 |
| PaeR7I | CTCGAG | 1 cut(s) | 167 |
| PagI | TCATGA | 1 cut(s) | 564 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 140 |
| PctI | GAATGC | 1 cut(s) | 61 |
| PdmI | GAANNNNTTC | 1 cut(s) | 176 |
| PfeI | GAWTC | 2 cut(s) | 508, 561 |
| PkrI | GCNGC | 6 cut(s) | 34, 54, 149, 158, 161, 283 |
| PleI | GAGTC | 3 cut(s) | 19, 144, 484 |
| PpsI | GAGTC | 3 cut(s) | 19, 144, 484 |
| Psp124BI | GAGCTC | 2 cut(s) | 168, 390 |
| PspFI | CCCAGC | 2 cut(s) | 319, 460 |
| SacI | GAGCTC | 2 cut(s) | 168, 390 |
| SalI | GTCGAC | 2 cut(s) | 8, 73 |
| SatI | GCNGC | 6 cut(s) | 33, 53, 148, 157, 160, 282 |
| SchI | GAGTC | 3 cut(s) | 19, 145, 485 |
| ScrFI | CCNGG | 1 cut(s) | 218 |
| SduI | GDGCHC | 3 cut(s) | 168, 390, 425 |
| SfaNI | GCATC | 4 cut(s) | 306, 385, 419, 447 |
| Sfr274I | CTCGAG | 1 cut(s) | 167 |
| SlaI | CTCGAG | 1 cut(s) | 167 |
| SmlI | CTYRAG | 1 cut(s) | 167 |
| SmoI | CTYRAG | 1 cut(s) | 167 |
| Sse9I | AATT | 2 cut(s) | 98, 257 |
| SsiI | CCGC | 2 cut(s) | 281, 481 |
| SstI | GAGCTC | 2 cut(s) | 168, 390 |
| StyD4I | CCNGG | 1 cut(s) | 216 |
| StyI | CCWWGG | 1 cut(s) | 78 |
| TaaI | ACNGT | 4 cut(s) | 7, 200, 206, 247 |
| TaqI | TCGA | 6 cut(s) | 9, 74, 107, 134, 168, 519 |
| TasI | AATT | 2 cut(s) | 98, 257 |
| TauI | GCSGC | 1 cut(s) | 284 |
| TfiI | GAWTC | 2 cut(s) | 508, 561 |
| TseFI | GTSAC | 1 cut(s) | 200 |
| TseI | GCWGC | 5 cut(s) | 32, 52, 147, 156, 159 |
| Tsp45I | GTSAC | 1 cut(s) | 200 |
| TspDTI | ATGAA | 1 cut(s) | 426 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 238 |
| XceI | RCATGY | 1 cut(s) | 517 |
| XhoI | CTCGAG | 1 cut(s) | 167 |
| XmiI | GTMKAC | 2 cut(s) | 9, 74 |
| XmnI | GAANNNNTTC | 1 cut(s) | 176 |
| Zsp2I | ATGCAT | 1 cut(s) | 434 |