MD08G1197000.v1.1
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000389
Physical Location & Seq
Forward (+)
25454425 .. 25455002
578 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1197000.v1.1.491

Sequence Viewer

Length: 255 bp
ATGAGTGAGATTATGGCACGTGCGAATAAGGGAGTTGAGCTTATAGAAGCTAACAACCAGCTAAAGCAGAGGATGGTGATGTTATCCGCTGGAGGAGATATCGGACCTGCGGCGATCATGGAGTTGGAAAACCTGAATAATGTTGGAGAAGAAGGCGTGACATCTGAATCAGCCACAAATGTCACCACCTGCTCCAGCAGTGCTTTTTCTCTCGAAGATGACTGCTCCGACATCTTGTCTCTCAAACTGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

85

Amino Acids

8.82

Weight (kDa)

4.15

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 197
Acc36I ACCTGC 2 cut(s) 115, 197
AciI CCGC 2 cut(s) 87, 110
AcvI CACGTG 1 cut(s) 20
AhdI GACNNNNNGTC 1 cut(s) 235
AluBI AGCT 3 cut(s) 40, 50, 61
AluI AGCT 3 cut(s) 40, 50, 61
Alw26I GTCTC 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 88, 175
AvaII GGWCC 1 cut(s) 104
BbrPI CACGTG 1 cut(s) 20
BccI CCATC 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 243
BfuAI ACCTGC 2 cut(s) 115, 197
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 104
BmeRI GACNNNNNGTC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 104
BpmI CTGGAG 2 cut(s) 111, 178
BsaAI YACGTR 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 252
BseRI GAGGAG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 243
Bsp143I GATC 1 cut(s) 114
BspACI CCGC 2 cut(s) 87, 110
BspMI ACCTGC 2 cut(s) 115, 197
BsrI ACTGG 1 cut(s) 252
BssMI GATC 1 cut(s) 114
BstBAI YACGTR 1 cut(s) 20
BstF5I GGATG 1 cut(s) 78
BstKTI GATC 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 1 cut(s) 114
BtsCI GGATG 1 cut(s) 78
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 205
BveI ACCTGC 2 cut(s) 115, 197
Cfr13I GGNCC 1 cut(s) 104
CviAII CATG 1 cut(s) 118
CviJI RGCY 4 cut(s) 40, 50, 61, 173
CviKI_1 RGCY 4 cut(s) 40, 50, 61, 173
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
DriI GACNNNNNGTC 1 cut(s) 235
Eam1105I GACNNNNNGTC 1 cut(s) 235
Eco32I GATATC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 104
Eco72I CACGTG 1 cut(s) 20
EcoRV GATATC 1 cut(s) 100
FaeI CATG 1 cut(s) 121
FaiI YATR 3 cut(s) 14, 44, 119
FatI CATG 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
GsuI CTGGAG 2 cut(s) 111, 178
Hin1II CATG 1 cut(s) 121
HinfI GANTC 1 cut(s) 167
HphI GGTGA 2 cut(s) 88, 175
Hpy188I TCNGA 3 cut(s) 104, 166, 229
Hpy188III TCNNGA 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 19
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 1 cut(s) 121
Kzo9I GATC 1 cut(s) 114
LmnI GCTCC 2 cut(s) 197, 230
LpnPI CCDG 7 cut(s) 71, 75, 120, 146, 202, 208, 233
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 2 cut(s) 157, 181
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 2 cut(s) 161, 227
MmeI TCCRAC 3 cut(s) 105, 124, 252
MnlI CCTC 2 cut(s) 63, 86
MspA1I CMGCKG 1 cut(s) 89
NdeII GATC 1 cut(s) 114
NlaIII CATG 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 157, 181
PaqCI CACCTGC 1 cut(s) 197
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 1 cut(s) 112
PmaCI CACGTG 1 cut(s) 20
PmlI CACGTG 1 cut(s) 20
Ppu21I YACGTR 1 cut(s) 20
PspCI CACGTG 1 cut(s) 20
PspPI GGNCC 1 cut(s) 104
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 114
Sau96I GGNCC 1 cut(s) 104
SetI ASST 7 cut(s) 22, 42, 52, 63, 109, 135, 191
SinI GGWCC 1 cut(s) 104
SsiI CCGC 2 cut(s) 87, 110
TaiI ACGT 1 cut(s) 22
TaqI TCGA 1 cut(s) 213
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 1 cut(s) 167
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 2 cut(s) 157, 181
Tsp45I GTSAC 2 cut(s) 157, 181
TspRI CASTG 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.