Rw7G037740
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000389
Physical Location & Seq
Reverse (-)
57240055 .. 57248632
8578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G037740.1

Sequence Viewer

Length: 723 bp
ATGAATAAGATCAAGATTGAGAAGATAGAAAACCTGCCGGCGAGGCAGGTGACGTTTTCAAAGAGGAGACAAGGGCTGTTCAAGAAAGCCGGAGAATTATCAGTTCTCTGCGACGCTGAGGTTGCTGTCATCGTCTTTTCTTCTACTGGCAAGCTCTACGAGTCCTCCAGCTCCAGTACGAAGGATGTCATTGCAAGGTACAACCTGCACACTGAAGATGGGGAAGAGGGGGACCAGCAGCCACCTCCTGAGCTCCAGCTGGAGAATAATGAGTGCATGAGGTTGAATAAGGAACTTGCTGACAAGATCCTCAAGCTAAGGCAGATGGAGGGGCAGGATCTAGAAGAGCTGACTATAGATGAGTTGCAGAGACTGGAGAATAGGATTGAAGGAGGACTCAGCCGTGTACTTCAAGCTAAGGATGAAAGTATTATGAGTCAGATTGTGGCACTTGAAACAAAGGGAGCCGAGTTGACAGAAGCAAACAACCAATTAAGGCAGAGGGTAAATAAGTTAGGGATGCTATCCAATGGAGATGGAAATAGAGCTAGTGGTGTTGCTTTGGAGTCGGAGATCTCAACTGATGAAGAAGGAGGTATGGCATCGGAATTTGCCACAAGTTCCACCGGCTACTACGGTACTGGTTCTTCGACTTCTTCCCTTGAGGATGACTCCTCTGACAACACCTTATCCCTCAAACTTGGGCTTCCTCGCTGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

240

Amino Acids

26.3

Weight (kDa)

4.72

Isoelectric Point (pI)

55.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 8 - 54 1.3e-25 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 86 - 169 1.7e-15 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 37
Acc36I ACCTGC 3 cut(s) 37, 42, 213
AclWI GGATC 2 cut(s) 301, 345
AcsI RAATTY 1 cut(s) 608
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 4 cut(s) 178, 200, 408, 640
AfiI CCNNNNNNNGG 1 cut(s) 716
AgsI TTSAA 6 cut(s) 60, 82, 286, 389, 413, 455
AluBI AGCT 8 cut(s) 154, 171, 253, 259, 316, 349, 416, 548
AluI AGCT 8 cut(s) 154, 171, 253, 259, 316, 349, 416, 548
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 2 cut(s) 61, 364
AlwI GGATC 2 cut(s) 301, 345
AlwNI CAGNNNCTG 1 cut(s) 373
ApeKI GCWGC 1 cut(s) 238
ApoI RAATTY 1 cut(s) 608
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 1 cut(s) 232
BanII GRGCYC 1 cut(s) 255
BarI GAAGNNNNNNTAC 2 cut(s) 631, 663
Bbv12I GWGCWC 1 cut(s) 255
BbvCI CCTCAGC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 250
BccI CCATC 3 cut(s) 212, 319, 530
BceAI ACGGC 1 cut(s) 387
BcoDI GTCTC 2 cut(s) 61, 364
BfaI CTAG 2 cut(s) 341, 549
BfmI CTRYAG 1 cut(s) 354
BfuAI ACCTGC 3 cut(s) 37, 42, 213
BglI GCCNNNNNGGC 1 cut(s) 43
BglII AGATCT 1 cut(s) 573
BisI GCNGC 1 cut(s) 239
BlsI GCNGC 1 cut(s) 240
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 233, 466
BmsI GCATC 2 cut(s) 510, 611
BplI GAGNNNNNCTC 2 cut(s) 656, 688
BpmI CTGGAG 5 cut(s) 151, 157, 239, 281, 395
Bpu10I CCTNAGC 4 cut(s) 117, 249, 317, 417
BpuEI CTTGAG 2 cut(s) 296, 683
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 1 cut(s) 716
Bse118I RCCGGY 2 cut(s) 37, 626
Bse1I ACTGG 4 cut(s) 151, 174, 378, 646
Bse3DI GCAATG 1 cut(s) 189
BseGI GGATG 4 cut(s) 190, 427, 525, 673
BseLI CCNNNNNNNGG 1 cut(s) 716
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 3 cut(s) 108, 240, 412
BseNI ACTGG 4 cut(s) 151, 174, 378, 646
BseRI GAGGAG 2 cut(s) 79, 664
BseXI GCAGC 1 cut(s) 250
BsgI GTGCAG 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 255
BsiSI CCGG 3 cut(s) 38, 90, 627
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 716
BsmAI GTCTC 2 cut(s) 61, 364
BsmFI GGGAC 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 4 cut(s) 9, 306, 337, 573
BspCNI CTCAG 3 cut(s) 109, 241, 411
BspLI GGNNCC 2 cut(s) 233, 466
BspMI ACCTGC 3 cut(s) 37, 42, 213
BspPI GGATC 2 cut(s) 301, 345
BspQI GCTCTTC 1 cut(s) 339
BsrDI GCAATG 1 cut(s) 189
BsrFI RCCGGY 2 cut(s) 37, 626
BsrI ACTGG 4 cut(s) 151, 174, 378, 646
BssAI RCCGGY 2 cut(s) 37, 626
BssMI GATC 4 cut(s) 9, 306, 337, 573
Bst4CI ACNGT 1 cut(s) 638
Bst6I CTCTTC 2 cut(s) 219, 339
BstC8I GCNNGC 2 cut(s) 39, 152
BstDEI CTNAG 5 cut(s) 117, 249, 317, 398, 417
BstF5I GGATG 4 cut(s) 190, 427, 525, 673
BstKTI GATC 4 cut(s) 12, 309, 340, 576
BstMAI GTCTC 2 cut(s) 61, 364
BstMBI GATC 4 cut(s) 9, 306, 337, 573
BstMWI GCNNNNNNNGC 2 cut(s) 43, 122
BstSFI CTRYAG 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 250
BstX2I RGATCY 3 cut(s) 306, 337, 573
BstYI RGATCY 3 cut(s) 306, 337, 573
BtsCI GGATG 4 cut(s) 190, 427, 525, 673
BtsIMutI CAGTG 1 cut(s) 210
BveI ACCTGC 3 cut(s) 37, 42, 213
Cac8I GCNNGC 2 cut(s) 39, 152
CaiI CAGNNNCTG 1 cut(s) 373
Cfr10I RCCGGY 2 cut(s) 37, 626
Cfr13I GGNCC 1 cut(s) 232
CseI GACGC 1 cut(s) 122
Csp6I GTAC 4 cut(s) 177, 199, 407, 639
CviAII CATG 1 cut(s) 277
CviQI GTAC 4 cut(s) 177, 199, 407, 639
DdeI CTNAG 5 cut(s) 117, 249, 317, 398, 417
DpnI GATC 4 cut(s) 11, 308, 339, 575
DpnII GATC 4 cut(s) 9, 306, 337, 573
Eam1104I CTCTTC 2 cut(s) 219, 339
EarI CTCTTC 2 cut(s) 219, 339
Ecl136II GAGCTC 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 232
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 255
FaeI CATG 1 cut(s) 280
FaiI YATR 4 cut(s) 278, 356, 434, 599
FaqI GGGAC 1 cut(s) 245
FatI CATG 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 239
FokI GGATG 4 cut(s) 197, 434, 532, 680
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 1 cut(s) 239
FspBI CTAG 2 cut(s) 341, 549
GluI GCNGC 1 cut(s) 239
GsuI CTGGAG 5 cut(s) 151, 157, 239, 281, 395
HapII CCGG 3 cut(s) 38, 90, 627
HgaI GACGC 1 cut(s) 122
Hin1II CATG 1 cut(s) 280
HincII GTYRAC 1 cut(s) 474
HindII GTYRAC 1 cut(s) 474
HinfI GANTC 5 cut(s) 161, 396, 436, 566, 671
HpaII CCGG 3 cut(s) 38, 90, 627
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 2 cut(s) 407, 474
Hpy188I TCNGA 4 cut(s) 441, 571, 607, 679
Hpy188III TCNNGA 4 cut(s) 13, 82, 248, 341
Hpy8I GTNNAC 2 cut(s) 407, 474
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 3 cut(s) 175, 383, 584
HpyCH4III ACNGT 1 cut(s) 638
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 4 cut(s) 194, 208, 276, 367
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 122
HpyF3I CTNAG 5 cut(s) 117, 249, 317, 398, 417
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 1 cut(s) 280
KroI GCCGGC 1 cut(s) 37
KroNI GCCGGC 1 cut(s) 39
Kzo9I GATC 4 cut(s) 9, 306, 337, 573
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 3 cut(s) 176, 258, 464
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 2 cut(s) 510, 611
MaeI CTAG 2 cut(s) 341, 549
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 49
MalI GATC 4 cut(s) 11, 308, 339, 575
MboI GATC 4 cut(s) 9, 306, 337, 573
MboII GAAGA 8 cut(s) 34, 132, 227, 236, 356, 599, 639, 648
MflI RGATCY 3 cut(s) 306, 337, 573
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 3 cut(s) 95, 491, 608
MlyI GAGTC 5 cut(s) 170, 390, 445, 575, 665
MmeI TCCRAC 1 cut(s) 549
MroNI GCCGGC 1 cut(s) 37
MseI TTAA 1 cut(s) 494
MspA1I CMGCKG 1 cut(s) 259
MspI CCGG 3 cut(s) 38, 90, 627
MwoI GCNNNNNNNGC 2 cut(s) 43, 122
NaeI GCCGGC 1 cut(s) 39
NdeII GATC 4 cut(s) 9, 306, 337, 573
NgoMIV GCCGGC 1 cut(s) 37
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 2 cut(s) 233, 466
NmeAIII GCCGAG 1 cut(s) 493
NmuCI GTSAC 1 cut(s) 49
PaqCI CACCTGC 1 cut(s) 37
PciSI GCTCTTC 1 cut(s) 339
PdiI GCCGGC 1 cut(s) 39
PkrI GCNGC 1 cut(s) 240
PleI GAGTC 5 cut(s) 169, 390, 444, 574, 665
PpsI GAGTC 5 cut(s) 169, 390, 444, 574, 665
Psp124BI GAGCTC 1 cut(s) 255
PspN4I GGNNCC 2 cut(s) 233, 466
PspPI GGNCC 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 373
PsuI RGATCY 3 cut(s) 306, 337, 573
PvuII CAGCTG 1 cut(s) 259
RsaI GTAC 4 cut(s) 178, 200, 408, 640
RsaNI GTAC 4 cut(s) 177, 199, 407, 639
SacI GAGCTC 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 339
SaqAI TTAA 1 cut(s) 494
SatI GCNGC 1 cut(s) 239
Sau3AI GATC 4 cut(s) 9, 306, 337, 573
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 5 cut(s) 170, 390, 445, 575, 665
SduI GDGCHC 1 cut(s) 255
SfaNI GCATC 2 cut(s) 510, 611
SfcI CTRYAG 1 cut(s) 354
SinI GGWCC 1 cut(s) 232
SmlI CTYRAG 2 cut(s) 311, 662
SmoI CTYRAG 2 cut(s) 311, 662
Sse9I AATT 3 cut(s) 95, 491, 608
SspMI CTAG 2 cut(s) 341, 549
SstI GAGCTC 1 cut(s) 255
TaaI ACNGT 1 cut(s) 638
TaiI ACGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 650
TasI AATT 3 cut(s) 95, 491, 608
TatI WGTACW 1 cut(s) 406
Tru1I TTAA 1 cut(s) 494
Tru9I TTAA 1 cut(s) 494
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 3 cut(s) 17, 438, 600
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 1 cut(s) 608
XbaI TCTAGA 1 cut(s) 340
XspI CTAG 2 cut(s) 341, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.