FvH4_5g35400
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000389
Physical Location & Seq
Reverse (-)
25927167 .. 25935305
8139 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g35400.t2

Sequence Viewer

Length: 708 bp
ATGACGAAGCCCGCGAGGAATAAGATAAAGATCAGGAAGATTGACAACTTGCCGGCGAGGCAGGTGACGTTTTCGAAGAGGAGGAGAGGGCTTTTGAAGAAAGCTGGAGAGCTTTCGGTGCTCTGTGATTGTGAGTATGCTGTGATCATCTTCTCTGCTACTGGAAAGCTCTTCGAGTCCTCCAGCTCCAGCACCAAGGATGTCATTGCAAGGTATAAGGCACACATTGAAAATGTGGAGAAGTTGGAGCAGCCATCTATTGAGCTCCAGCCTGATCGCATCAAGTTGAGCAAGGACCTTGCTGAGAAGAGCCGCGTGCTAAGGCAGATGAATGGTGAGGATCTGGAAGGGCTGAATATAGACGAGTTGCAGAAATTGGAGAAGCAGATTGAAGGAGGACTTAGCCGTGTACTTCAGACAAAGGAAGAAAAGATTATGAGTGAGATTCTGGCACTTGAAGCAAAGGGAGCCCAGTTGTTGCAAGCGAACAATCAATTAAGGCAGAGGATAGGGATGCTATCGGTTGCAAATGGGAAGAATGCTGGTGTAATCGCCCTGGAGTCGGATAACTCAACGGCCGAAGAAGGTTTGTCATCGGAGTCTGGCACAAGTGGCAGCAGTTGCTGCGCTAATGGTTCTTCCCCAGACGATGACTCTGCTGACGACACTTTATCTCTCAAGCTTGGGCTTATTCCTTACCGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

236

Amino Acids

25.66

Weight (kDa)

7.59

Isoelectric Point (pI)

53.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 13 - 59 4.5e-21 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 89 - 170 9.2e-16 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 52
Acc36I ACCTGC 1 cut(s) 52
AccII CGCG 2 cut(s) 14, 315
AciI CCGC 2 cut(s) 12, 313
AclWI GGATC 1 cut(s) 348
AcoI YGGCCR 1 cut(s) 576
AcuI CTGAAG 1 cut(s) 398
AfaI GTAC 1 cut(s) 411
AfiI CCNNNNNNNGG 2 cut(s) 562, 701
AgsI TTSAA 4 cut(s) 97, 230, 392, 458
AjnI CCWGG 1 cut(s) 555
AluBI AGCT 6 cut(s) 104, 112, 169, 186, 265, 682
AluI AGCT 6 cut(s) 104, 112, 169, 186, 265, 682
Alw21I GWGCWC 2 cut(s) 123, 267
AlwI GGATC 1 cut(s) 348
AlwNI CAGNNNCTG 1 cut(s) 624
AoxI GGCC 1 cut(s) 576
ApeKI GCWGC 3 cut(s) 250, 615, 624
AspLEI GCGC 1 cut(s) 629
AspS9I GGNCC 1 cut(s) 295
AsuHPI GGTGA 2 cut(s) 76, 347
AsuII TTCGAA 1 cut(s) 74
AvaII GGWCC 1 cut(s) 295
BanII GRGCYC 2 cut(s) 267, 472
Bbv12I GWGCWC 2 cut(s) 123, 267
BbvI GCAGC 3 cut(s) 262, 611, 627
BccI CCATC 1 cut(s) 262
BceAI ACGGC 2 cut(s) 390, 591
BcgI CGANNNNNNTGC 2 cut(s) 638, 672
BciT130I CCWGG 1 cut(s) 557
BclI TGATCA 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 52
BglI GCCNNNNNGGC 1 cut(s) 58
BisI GCNGC 4 cut(s) 251, 313, 616, 625
BlsI GCNGC 4 cut(s) 252, 314, 617, 626
Bme1390I CCNGG 1 cut(s) 557
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 469
BmrFI CCNGG 1 cut(s) 557
BmrI ACTGGG 1 cut(s) 466
BmsI GCATC 2 cut(s) 288, 504
BmuI ACTGGG 1 cut(s) 466
BpmI CTGGAG 5 cut(s) 126, 166, 172, 251, 578
Bpu10I CCTNAGC 1 cut(s) 320
Bpu14I TTCGAA 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 662
BsaBI GATNNNNATC 1 cut(s) 29
BsaJI CCNNGG 3 cut(s) 195, 555, 700
Bsc4I CCNNNNNNNGG 2 cut(s) 562, 701
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 166, 472
Bse3DI GCAATG 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 29
BseBI CCWGG 1 cut(s) 557
BseDI CCNNGG 3 cut(s) 195, 555, 700
BseGI GGATG 2 cut(s) 205, 519
BseJI GATNNNNATC 1 cut(s) 29
BseLI CCNNNNNNNGG 2 cut(s) 562, 701
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 166, 472
BseRI GAGGAG 2 cut(s) 94, 97
BseX3I CGGCCG 1 cut(s) 576
BseXI GCAGC 3 cut(s) 262, 611, 627
Bsh1236I CGCG 2 cut(s) 14, 315
Bsh1285I CGRYCG 1 cut(s) 579
BshFI GGCC 1 cut(s) 578
BsiEI CGRYCG 1 cut(s) 579
BsiHKAI GWGCWC 2 cut(s) 123, 267
BsiSI CCGG 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 562, 701
BsmI GAATGC 1 cut(s) 544
BsnI GGCC 1 cut(s) 578
Bsp119I TTCGAA 1 cut(s) 74
Bsp1286I GDGCHC 3 cut(s) 123, 267, 472
Bsp143I GATC 4 cut(s) 30, 144, 274, 340
BspACI CCGC 2 cut(s) 12, 313
BspANI GGCC 1 cut(s) 578
BspCNI CTCAG 1 cut(s) 295
BspFNI CGCG 2 cut(s) 14, 315
BspLI GGNNCC 1 cut(s) 469
BspMI ACCTGC 1 cut(s) 52
BspPI GGATC 1 cut(s) 348
BspQI GCTCTTC 2 cut(s) 176, 302
BspT104I TTCGAA 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 204
BsrFI RCCGGY 1 cut(s) 52
BsrI ACTGG 2 cut(s) 166, 472
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 3 cut(s) 195, 555, 700
BssMI GATC 4 cut(s) 30, 144, 274, 340
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 557
Bst4CI ACNGT 1 cut(s) 701
Bst6I CTCTTC 3 cut(s) 71, 176, 302
BstAPI GCANNNNNTGC 2 cut(s) 621, 624
BstBI TTCGAA 1 cut(s) 74
BstC8I GCNNGC 4 cut(s) 12, 54, 317, 483
BstDEI CTNAG 3 cut(s) 303, 320, 401
BstDSI CCRYGG 1 cut(s) 700
BstF5I GGATG 2 cut(s) 205, 519
BstFNI CGCG 2 cut(s) 14, 315
BstHHI GCGC 1 cut(s) 629
BstKTI GATC 4 cut(s) 33, 147, 277, 343
BstMBI GATC 4 cut(s) 30, 144, 274, 340
BstMCI CGRYCG 1 cut(s) 579
BstMWI GCNNNNNNNGC 7 cut(s) 58, 118, 458, 467, 612, 621, 624
BstNI CCWGG 1 cut(s) 557
BstSCI CCNGG 1 cut(s) 555
BstUI CGCG 2 cut(s) 14, 315
BstV1I GCAGC 3 cut(s) 262, 611, 627
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BstZI CGGCCG 1 cut(s) 576
BsuRI GGCC 1 cut(s) 578
BtgI CCRYGG 1 cut(s) 700
BtsCI GGATG 2 cut(s) 205, 519
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 4 cut(s) 12, 54, 317, 483
CaiI CAGNNNCTG 1 cut(s) 624
CfoI GCGC 1 cut(s) 629
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 295
Csp6I GTAC 1 cut(s) 410
CviQI GTAC 1 cut(s) 410
DdeI CTNAG 3 cut(s) 303, 320, 401
DpnI GATC 4 cut(s) 32, 146, 276, 342
DpnII GATC 4 cut(s) 30, 144, 274, 340
EaeI YGGCCR 1 cut(s) 576
EagI CGGCCG 1 cut(s) 576
Eam1104I CTCTTC 3 cut(s) 71, 176, 302
EarI CTCTTC 3 cut(s) 71, 176, 302
Ecl136II GAGCTC 1 cut(s) 265
EclXI CGGCCG 1 cut(s) 576
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 2 cut(s) 267, 472
Eco47I GGWCC 1 cut(s) 295
Eco52I CGGCCG 1 cut(s) 576
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 398
EcoICRI GAGCTC 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 555
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 2 cut(s) 267, 472
ErhI CCWWGG 1 cut(s) 195
FaiI YATR 4 cut(s) 138, 216, 359, 437
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FauI CCCGC 1 cut(s) 19
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 4 cut(s) 251, 313, 616, 625
FokI GGATG 2 cut(s) 212, 526
FriOI GRGCYC 2 cut(s) 267, 472
Fsp4HI GCNGC 4 cut(s) 251, 313, 616, 625
GlaI GCGC 1 cut(s) 628
GluI GCNGC 4 cut(s) 251, 313, 616, 625
GsuI CTGGAG 5 cut(s) 126, 166, 172, 251, 578
HaeIII GGCC 1 cut(s) 578
HapII CCGG 1 cut(s) 53
HhaI GCGC 1 cut(s) 629
Hin6I GCGC 1 cut(s) 627
HinP1I GCGC 1 cut(s) 627
HindIII AAGCTT 1 cut(s) 680
HinfI GANTC 5 cut(s) 176, 445, 560, 599, 653
HpaII CCGG 1 cut(s) 53
HphI GGTGA 2 cut(s) 76, 347
Hpy166II GTNNAC 1 cut(s) 410
Hpy188I TCNGA 3 cut(s) 417, 565, 598
Hpy188III TCNNGA 2 cut(s) 34, 344
Hpy8I GTNNAC 1 cut(s) 410
HpyAV CCTTC 3 cut(s) 341, 386, 578
HpyCH4III ACNGT 1 cut(s) 701
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 4 cut(s) 209, 370, 481, 527
HpyF10VI GCNNNNNNNGC 7 cut(s) 58, 118, 458, 467, 612, 621, 624
HpyF3I CTNAG 3 cut(s) 303, 320, 401
HpySE526I ACGT 1 cut(s) 68
HspAI GCGC 1 cut(s) 627
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 4 cut(s) 30, 144, 274, 340
LguI GCTCTTC 2 cut(s) 176, 302
LmnI GCTCC 4 cut(s) 191, 247, 270, 467
Lsp1109I GCAGC 3 cut(s) 262, 611, 627
LweI GCATC 2 cut(s) 288, 504
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 64
MalI GATC 4 cut(s) 32, 146, 276, 342
MboI GATC 4 cut(s) 30, 144, 274, 340
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 3 cut(s) 123, 267, 472
MluCI AATT 2 cut(s) 374, 494
MlyI GAGTC 4 cut(s) 185, 569, 608, 647
MmeI TCCRAC 2 cut(s) 225, 543
MnlI CCTC 9 cut(s) 9, 51, 72, 75, 80, 190, 331, 389, 498
MroNI GCCGGC 1 cut(s) 52
MseI TTAA 1 cut(s) 497
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 557
Mva1269I GAATGC 1 cut(s) 544
MvaI CCWGG 1 cut(s) 557
MvnI CGCG 2 cut(s) 14, 315
MwoI GCNNNNNNNGC 7 cut(s) 58, 118, 458, 467, 612, 621, 624
NaeI GCCGGC 1 cut(s) 54
NdeII GATC 4 cut(s) 30, 144, 274, 340
NgoMIV GCCGGC 1 cut(s) 52
NlaIV GGNNCC 1 cut(s) 469
NmuCI GTSAC 1 cut(s) 64
NspV TTCGAA 1 cut(s) 74
PaqCI CACCTGC 1 cut(s) 52
PciSI GCTCTTC 2 cut(s) 176, 302
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PctI GAATGC 1 cut(s) 544
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 445
PkrI GCNGC 4 cut(s) 252, 314, 617, 626
PleI GAGTC 4 cut(s) 184, 568, 607, 647
PpsI GAGTC 4 cut(s) 184, 568, 607, 647
PpuMI RGGWCCY 1 cut(s) 295
Psp124BI GAGCTC 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 555
PspGI CCWGG 1 cut(s) 555
PspN4I GGNNCC 1 cut(s) 469
PspPI GGNCC 1 cut(s) 295
PspPPI RGGWCCY 1 cut(s) 295
PstNI CAGNNNCTG 1 cut(s) 624
PsuI RGATCY 1 cut(s) 340
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
SacI GAGCTC 1 cut(s) 267
SapI GCTCTTC 2 cut(s) 176, 302
SaqAI TTAA 1 cut(s) 497
SatI GCNGC 4 cut(s) 251, 313, 616, 625
Sau3AI GATC 4 cut(s) 30, 144, 274, 340
Sau96I GGNCC 1 cut(s) 295
SchI GAGTC 4 cut(s) 185, 569, 608, 647
ScrFI CCNGG 1 cut(s) 557
SduI GDGCHC 3 cut(s) 123, 267, 472
SfaNI GCATC 2 cut(s) 288, 504
SfuI TTCGAA 1 cut(s) 74
SinI GGWCC 1 cut(s) 295
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
Sse9I AATT 2 cut(s) 374, 494
SsiI CCGC 2 cut(s) 12, 313
SstI GAGCTC 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 555
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 701
TaiI ACGT 1 cut(s) 71
TaqI TCGA 2 cut(s) 74, 174
TasI AATT 2 cut(s) 374, 494
TatI WGTACW 1 cut(s) 409
TauI GCSGC 1 cut(s) 315
TfiI GAWTC 1 cut(s) 445
Tru1I TTAA 1 cut(s) 497
Tru9I TTAA 1 cut(s) 497
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 3 cut(s) 250, 615, 624
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.