MADS-box protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 31, 263, 339 |
| AclWI | GGATC | 1 cut(s) | 81 |
| AcoI | YGGCCR | 1 cut(s) | 121 |
| AgsI | TTSAA | 2 cut(s) | 65, 368 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 388 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 102, 134 |
| AluBI | AGCT | 6 cut(s) | 94, 188, 193, 203, 214, 242 |
| AluI | AGCT | 6 cut(s) | 94, 188, 193, 203, 214, 242 |
| Alw21I | GWGCWC | 1 cut(s) | 358 |
| Alw26I | GTCTC | 1 cut(s) | 396 |
| AlwI | GGATC | 1 cut(s) | 81 |
| AoxI | GGCC | 1 cut(s) | 121 |
| AspS9I | GGNCC | 1 cut(s) | 58 |
| AsuHPI | GGTGA | 3 cut(s) | 65, 241, 328 |
| AvaII | GGWCC | 1 cut(s) | 58 |
| Bbv12I | GWGCWC | 1 cut(s) | 358 |
| BceAI | ACGGC | 1 cut(s) | 108 |
| BcoDI | GTCTC | 1 cut(s) | 396 |
| BfaI | CTAG | 2 cut(s) | 95, 243 |
| BisI | GCNGC | 1 cut(s) | 264 |
| BlpI | GCTNAGC | 1 cut(s) | 189 |
| BlsI | GCNGC | 1 cut(s) | 265 |
| Bme18I | GGWCC | 1 cut(s) | 58 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 388 |
| BmgT120I | GGNCC | 1 cut(s) | 58 |
| BpmI | CTGGAG | 1 cut(s) | 331 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 189 |
| BpuEI | CTTGAG | 1 cut(s) | 38 |
| BsaBI | GATNNNNATC | 1 cut(s) | 78 |
| BsaJI | CCNNGG | 1 cut(s) | 38 |
| Bse118I | RCCGGY | 1 cut(s) | 259 |
| Bse1I | ACTGG | 1 cut(s) | 405 |
| Bse8I | GATNNNNATC | 1 cut(s) | 78 |
| BseDI | CCNNGG | 1 cut(s) | 38 |
| BseJI | GATNNNNATC | 1 cut(s) | 78 |
| BseMII | CTCAG | 1 cut(s) | 180 |
| BseNI | ACTGG | 1 cut(s) | 405 |
| BseRI | GAGGAG | 1 cut(s) | 261 |
| BshFI | GGCC | 1 cut(s) | 123 |
| BsiHKAI | GWGCWC | 1 cut(s) | 358 |
| BsiSI | CCGG | 1 cut(s) | 260 |
| BsmAI | GTCTC | 1 cut(s) | 396 |
| BsnI | GGCC | 1 cut(s) | 123 |
| Bsp1286I | GDGCHC | 1 cut(s) | 358 |
| Bsp143I | GATC | 3 cut(s) | 73, 79, 267 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 189 |
| BspACI | CCGC | 3 cut(s) | 31, 263, 339 |
| BspANI | GGCC | 1 cut(s) | 123 |
| BspCNI | CTCAG | 1 cut(s) | 181 |
| BspPI | GGATC | 1 cut(s) | 81 |
| BsrFI | RCCGGY | 1 cut(s) | 259 |
| BsrI | ACTGG | 1 cut(s) | 405 |
| BssAI | RCCGGY | 1 cut(s) | 259 |
| BssECI | CCNNGG | 1 cut(s) | 38 |
| BssMI | GATC | 3 cut(s) | 73, 79, 267 |
| BstC8I | GCNNGC | 3 cut(s) | 35, 115, 343 |
| BstDEI | CTNAG | 3 cut(s) | 5, 138, 189 |
| BstKTI | GATC | 3 cut(s) | 76, 82, 270 |
| BstMAI | GTCTC | 1 cut(s) | 396 |
| BstMBI | GATC | 3 cut(s) | 73, 79, 267 |
| BstX2I | RGATCY | 1 cut(s) | 73 |
| BstYI | RGATCY | 1 cut(s) | 73 |
| BsuRI | GGCC | 1 cut(s) | 123 |
| BtsI | GCAGTG | 1 cut(s) | 358 |
| BtsIMutI | CAGTG | 1 cut(s) | 358 |
| Cac8I | GCNNGC | 3 cut(s) | 35, 115, 343 |
| Cfr10I | RCCGGY | 1 cut(s) | 259 |
| Cfr13I | GGNCC | 1 cut(s) | 58 |
| CviAII | CATG | 2 cut(s) | 271, 310 |
| CviJI | RGCY | 9 cut(s) | 37, 94, 123, 188, 193, 203, 214, 242, 326 |
| CviKI_1 | RGCY | 9 cut(s) | 37, 94, 123, 188, 193, 203, 214, 242, 326 |
| DdeI | CTNAG | 3 cut(s) | 5, 138, 189 |
| DpnI | GATC | 3 cut(s) | 75, 81, 269 |
| DpnII | GATC | 3 cut(s) | 73, 79, 267 |
| DriI | GACNNNNNGTC | 1 cut(s) | 388 |
| EaeI | YGGCCR | 1 cut(s) | 121 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 388 |
| Eco32I | GATATC | 1 cut(s) | 253 |
| Eco47I | GGWCC | 1 cut(s) | 58 |
| EcoO109I | RGGNCCY | 1 cut(s) | 58 |
| EcoRV | GATATC | 1 cut(s) | 253 |
| FaeI | CATG | 2 cut(s) | 274, 313 |
| FaiI | YATR | 5 cut(s) | 155, 167, 197, 272, 311 |
| FatI | CATG | 2 cut(s) | 270, 309 |
| FauI | CCCGC | 1 cut(s) | 38 |
| Fnu4HI | GCNGC | 1 cut(s) | 264 |
| Fsp4HI | GCNGC | 1 cut(s) | 264 |
| FspBI | CTAG | 2 cut(s) | 95, 243 |
| GluI | GCNGC | 1 cut(s) | 264 |
| GsuI | CTGGAG | 1 cut(s) | 331 |
| HaeIII | GGCC | 1 cut(s) | 123 |
| HapII | CCGG | 1 cut(s) | 260 |
| Hin1II | CATG | 2 cut(s) | 274, 313 |
| HinfI | GANTC | 1 cut(s) | 320 |
| HpaII | CCGG | 1 cut(s) | 260 |
| HphI | GGTGA | 3 cut(s) | 65, 241, 328 |
| Hpy188I | TCNGA | 2 cut(s) | 319, 382 |
| Hpy188III | TCNNGA | 3 cut(s) | 65, 77, 365 |
| HpyAV | CCTTC | 3 cut(s) | 43, 71, 299 |
| HpyF3I | CTNAG | 3 cut(s) | 5, 138, 189 |
| Hsp92II | CATG | 2 cut(s) | 274, 313 |
| Kzo9I | GATC | 3 cut(s) | 73, 79, 267 |
| LmnI | GCTCC | 3 cut(s) | 185, 350, 383 |
| LpnPI | CCDG | 6 cut(s) | 224, 273, 299, 355, 361, 386 |
| MaeI | CTAG | 2 cut(s) | 95, 243 |
| MaeIII | GTNAC | 1 cut(s) | 334 |
| MalI | GATC | 3 cut(s) | 75, 81, 269 |
| MboI | GATC | 3 cut(s) | 73, 79, 267 |
| MboII | GAAGA | 2 cut(s) | 314, 380 |
| MflI | RGATCY | 1 cut(s) | 73 |
| MhlI | GDGCHC | 1 cut(s) | 358 |
| MluCI | AATT | 1 cut(s) | 129 |
| MmeI | TCCRAC | 3 cut(s) | 258, 277, 405 |
| MnlI | CCTC | 5 cut(s) | 13, 33, 49, 216, 239 |
| MseI | TTAA | 1 cut(s) | 132 |
| MspI | CCGG | 1 cut(s) | 260 |
| NdeII | GATC | 3 cut(s) | 73, 79, 267 |
| NlaIII | CATG | 2 cut(s) | 274, 313 |
| NmeAIII | GCCGAG | 1 cut(s) | 63 |
| NmuCI | GTSAC | 1 cut(s) | 334 |
| PfeI | GAWTC | 1 cut(s) | 320 |
| PkrI | GCNGC | 1 cut(s) | 265 |
| PpuMI | RGGWCCY | 1 cut(s) | 58 |
| Psp5II | RGGWCCY | 1 cut(s) | 58 |
| PspPI | GGNCC | 1 cut(s) | 58 |
| PspPPI | RGGWCCY | 1 cut(s) | 58 |
| PsuI | RGATCY | 1 cut(s) | 73 |
| SaqAI | TTAA | 1 cut(s) | 132 |
| SatI | GCNGC | 1 cut(s) | 264 |
| Sau3AI | GATC | 3 cut(s) | 73, 79, 267 |
| Sau96I | GGNCC | 1 cut(s) | 58 |
| SduI | GDGCHC | 1 cut(s) | 358 |
| SetI | ASST | 9 cut(s) | 63, 96, 190, 195, 205, 216, 227, 244, 288 |
| SinI | GGWCC | 1 cut(s) | 58 |
| SmlI | CTYRAG | 1 cut(s) | 17 |
| SmoI | CTYRAG | 1 cut(s) | 17 |
| Sse9I | AATT | 1 cut(s) | 129 |
| SsiI | CCGC | 3 cut(s) | 31, 263, 339 |
| SspMI | CTAG | 2 cut(s) | 95, 243 |
| TaqI | TCGA | 2 cut(s) | 78, 255 |
| TasI | AATT | 1 cut(s) | 129 |
| TauI | GCSGC | 1 cut(s) | 266 |
| TfiI | GAWTC | 1 cut(s) | 320 |
| Tru1I | TTAA | 1 cut(s) | 132 |
| Tru9I | TTAA | 1 cut(s) | 132 |
| TscAI | CASTG | 1 cut(s) | 358 |
| TseFI | GTSAC | 1 cut(s) | 334 |
| Tsp45I | GTSAC | 1 cut(s) | 334 |
| TspDTI | ATGAA | 1 cut(s) | 62 |
| TspRI | CASTG | 1 cut(s) | 358 |
| VpaK11BI | GGWCC | 1 cut(s) | 58 |
| XspI | CTAG | 2 cut(s) | 95, 243 |