RchiOBHm_Chr7g0236801
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000389
Physical Location & Seq
Reverse (-)
61515436 .. 61533502
18067 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21220

Sequence Viewer

Length: 702 bp
ATGTCGAAGCCGACGAGGGAGAAGATAAAGATCAGGAAGATCGACAACTTGTCGGCAAGGCAGGTGACGTTTTCGAAGAGGAGAAGAGGGCTTTTGAAGAAAGCTGGAGAGCTGTCGGTTCTCTGTGATTGTGAGTATGCTGTCATCATCTTCTCTGCTACTGGAAAGCTCTTCGAGTCCTCCAGCTCCAGCACAAAGGATGTTATTGCAAGGTACAAAGCGCACATTGAAAATGTGGAGAAGTTGGAGCCGTCTCTTGAGCTCCAGTTTGATCGCATCAAGTTGAGTAAGGAACTTGCAGATAAGACCCGCGTGCTAAGGCAGATGAATGGTGAGGATCTGGAAGGGCTGCATATGGATGAGTTGAAGAAATTGGAGGAGGACATTGAAGGAGGACTTAGCCGTGTGCTTCACACCAAGGAAGAAAAGATTATGGGTGAGATTATGGCACTTGAAGCAAAGGGAGCTGAGTTGTTGGAAGCGAACAATCATTTAAGGCAGACGATGGGGATGATATCCAATACAAATGGAAACAAAGCTGGTGTACTCGCCTTGGAGTCGGATATCTCAACGGCAGAAGAAGGTTTATCATCGGAATCTGCCACAAATGCTAGCAGCGACTGCGCTACTGGTTCTTCCCTAGATGTCGACTCTGCTGACGACACCTTATCTCTCAAACTTGGGCTTCCTTACCGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

233

Amino Acids

25.6

Weight (kDa)

5.57

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 13 - 59 6.3e-22 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 91 - 168 3.9e-14 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 52
Acc36I ACCTGC 1 cut(s) 52
AccI GTMKAC 1 cut(s) 648
AccII CGCG 1 cut(s) 312
AciI CCGC 1 cut(s) 310
AclWI GGATC 1 cut(s) 345
AfaI GTAC 2 cut(s) 215, 546
AfiI CCNNNNNNNGG 1 cut(s) 695
AgsI TTSAA 5 cut(s) 97, 230, 367, 389, 455
AhdI GACNNNNNGTC 1 cut(s) 49
AluBI AGCT 7 cut(s) 104, 112, 169, 186, 262, 467, 539
AluI AGCT 7 cut(s) 104, 112, 169, 186, 262, 467, 539
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 1 cut(s) 258
AlwI GGATC 1 cut(s) 345
AlwNI CAGNNNCTG 1 cut(s) 621
ApeKI GCWGC 2 cut(s) 349, 615
AspLEI GCGC 2 cut(s) 223, 626
AsuHPI GGTGA 3 cut(s) 76, 344, 449
AsuII TTCGAA 1 cut(s) 74
AsuNHI GCTAGC 1 cut(s) 611
BanII GRGCYC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 336, 627
BccI CCATC 1 cut(s) 499
BceAI ACGGC 3 cut(s) 235, 387, 588
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 2 cut(s) 612, 641
BfuAI ACCTGC 1 cut(s) 52
BisI GCNGC 2 cut(s) 350, 616
BlsI GCNGC 2 cut(s) 351, 617
BmeRI GACNNNNNGTC 1 cut(s) 49
BmiI GGNNCC 1 cut(s) 249
BmsI GCATC 1 cut(s) 285
BmtI GCTAGC 1 cut(s) 615
BpmI CTGGAG 4 cut(s) 126, 166, 172, 248
Bpu10I CCTNAGC 1 cut(s) 317
Bpu14I TTCGAA 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 29
BsaJI CCNNGG 3 cut(s) 417, 552, 694
Bsc4I CCNNNNNNNGG 1 cut(s) 695
Bse1I ACTGG 3 cut(s) 166, 265, 634
Bse8I GATNNNNATC 1 cut(s) 29
BseDI CCNNGG 3 cut(s) 417, 552, 694
BseGI GGATG 3 cut(s) 205, 364, 516
BseJI GATNNNNATC 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 695
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 3 cut(s) 166, 265, 634
BseRI GAGGAG 2 cut(s) 94, 392
BseXI GCAGC 2 cut(s) 336, 627
Bsh1236I CGCG 1 cut(s) 312
BsiHKAI GWGCWC 1 cut(s) 264
BslI CCNNNNNNNGG 1 cut(s) 695
BsmAI GTCTC 1 cut(s) 258
BsmBI CGTCTC 1 cut(s) 258
Bsp119I TTCGAA 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 4 cut(s) 30, 39, 271, 337
BspACI CCGC 1 cut(s) 310
BspCNI CTCAG 1 cut(s) 460
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 249
BspMI ACCTGC 1 cut(s) 52
BspOI GCTAGC 1 cut(s) 615
BspPI GGATC 1 cut(s) 345
BspQI GCTCTTC 1 cut(s) 176
BspT104I TTCGAA 1 cut(s) 74
BsrI ACTGG 3 cut(s) 166, 265, 634
BssECI CCNNGG 3 cut(s) 417, 552, 694
BssMI GATC 4 cut(s) 30, 39, 271, 337
BssT1I CCWWGG 2 cut(s) 417, 552
Bst4CI ACNGT 1 cut(s) 695
Bst6I CTCTTC 3 cut(s) 71, 79, 176
BstAPI GCANNNNNTGC 1 cut(s) 621
BstBI TTCGAA 1 cut(s) 74
BstC8I GCNNGC 2 cut(s) 314, 613
BstDEI CTNAG 3 cut(s) 317, 398, 468
BstDSI CCRYGG 1 cut(s) 694
BstF5I GGATG 3 cut(s) 205, 364, 516
BstFNI CGCG 1 cut(s) 312
BstHHI GCGC 2 cut(s) 223, 626
BstKTI GATC 4 cut(s) 33, 42, 274, 340
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 4 cut(s) 30, 39, 271, 337
BstMWI GCNNNNNNNGC 4 cut(s) 455, 464, 608, 621
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 336, 627
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BtgI CCRYGG 1 cut(s) 694
BtsCI GGATG 3 cut(s) 205, 364, 516
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 2 cut(s) 314, 613
CaiI CAGNNNCTG 1 cut(s) 621
CfoI GCGC 2 cut(s) 223, 626
Csp6I GTAC 2 cut(s) 214, 545
CviQI GTAC 2 cut(s) 214, 545
DdeI CTNAG 3 cut(s) 317, 398, 468
DpnI GATC 4 cut(s) 32, 41, 273, 339
DpnII GATC 4 cut(s) 30, 39, 271, 337
DriI GACNNNNNGTC 1 cut(s) 49
Eam1104I CTCTTC 3 cut(s) 71, 79, 176
Eam1105I GACNNNNNGTC 1 cut(s) 49
EarI CTCTTC 3 cut(s) 71, 79, 176
Ecl136II GAGCTC 1 cut(s) 262
Eco130I CCWWGG 2 cut(s) 417, 552
Eco24I GRGCYC 1 cut(s) 264
Eco32I GATATC 2 cut(s) 516, 565
Eco53kI GAGCTC 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 262
EcoRV GATATC 2 cut(s) 516, 565
EcoT14I CCWWGG 2 cut(s) 417, 552
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 2 cut(s) 417, 552
Esp3I CGTCTC 1 cut(s) 258
FaiI YATR 5 cut(s) 138, 354, 356, 434, 446
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FauI CCCGC 1 cut(s) 317
FauNDI CATATG 1 cut(s) 354
FblI GTMKAC 1 cut(s) 648
Fnu4HI GCNGC 2 cut(s) 350, 616
FokI GGATG 3 cut(s) 212, 371, 523
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 2 cut(s) 350, 616
FspBI CTAG 2 cut(s) 612, 641
GlaI GCGC 2 cut(s) 222, 625
GluI GCNGC 2 cut(s) 350, 616
GsuI CTGGAG 4 cut(s) 126, 166, 172, 248
HhaI GCGC 2 cut(s) 223, 626
Hin6I GCGC 2 cut(s) 221, 624
HinP1I GCGC 2 cut(s) 221, 624
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HinfI GANTC 4 cut(s) 176, 557, 596, 650
HphI GGTGA 3 cut(s) 76, 344, 449
Hpy166II GTNNAC 2 cut(s) 545, 649
Hpy188I TCNGA 2 cut(s) 562, 595
Hpy188III TCNNGA 3 cut(s) 34, 257, 341
Hpy8I GTNNAC 2 cut(s) 545, 649
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 3 cut(s) 338, 383, 575
HpyCH4III ACNGT 1 cut(s) 695
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 3 cut(s) 209, 299, 352
HpyF10VI GCNNNNNNNGC 4 cut(s) 455, 464, 608, 621
HpyF3I CTNAG 3 cut(s) 317, 398, 468
HpySE526I ACGT 1 cut(s) 68
HspAI GCGC 2 cut(s) 221, 624
Kzo9I GATC 4 cut(s) 30, 39, 271, 337
LguI GCTCTTC 1 cut(s) 176
LmnI GCTCC 4 cut(s) 191, 247, 267, 464
Lsp1109I GCAGC 2 cut(s) 336, 627
LweI GCATC 1 cut(s) 285
MaeI CTAG 2 cut(s) 612, 641
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 64
MalI GATC 4 cut(s) 32, 41, 273, 339
MboI GATC 4 cut(s) 30, 39, 271, 337
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 1 cut(s) 371
MlyI GAGTC 3 cut(s) 185, 566, 644
MmeI TCCRAC 3 cut(s) 225, 456, 540
MnlI CCTC 8 cut(s) 9, 72, 80, 190, 328, 370, 373, 386
MseI TTAA 1 cut(s) 494
MslI CAYNNNNRTG 1 cut(s) 357
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 4 cut(s) 455, 464, 608, 621
NdeI CATATG 1 cut(s) 354
NdeII GATC 4 cut(s) 30, 39, 271, 337
NheI GCTAGC 1 cut(s) 611
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 1 cut(s) 64
NspV TTCGAA 1 cut(s) 74
PaqCI CACCTGC 1 cut(s) 52
PciSI GCTCTTC 1 cut(s) 176
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PfeI GAWTC 1 cut(s) 596
PkrI GCNGC 2 cut(s) 351, 617
PleI GAGTC 3 cut(s) 184, 565, 644
PpsI GAGTC 3 cut(s) 184, 565, 644
Psp124BI GAGCTC 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 249
PstNI CAGNNNCTG 1 cut(s) 621
PsuI RGATCY 1 cut(s) 337
RsaI GTAC 2 cut(s) 215, 546
RsaNI GTAC 2 cut(s) 214, 545
RseI CAYNNNNRTG 1 cut(s) 357
SacI GAGCTC 1 cut(s) 264
SalI GTCGAC 1 cut(s) 647
SapI GCTCTTC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 494
SatI GCNGC 2 cut(s) 350, 616
Sau3AI GATC 4 cut(s) 30, 39, 271, 337
SchI GAGTC 3 cut(s) 185, 566, 644
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 1 cut(s) 285
SfuI TTCGAA 1 cut(s) 74
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 1 cut(s) 371
SsiI CCGC 1 cut(s) 310
SspMI CTAG 2 cut(s) 612, 641
SstI GAGCTC 1 cut(s) 264
StyI CCWWGG 2 cut(s) 417, 552
TaaI ACNGT 1 cut(s) 695
TaiI ACGT 1 cut(s) 71
TaqI TCGA 5 cut(s) 5, 42, 74, 174, 648
TasI AATT 1 cut(s) 371
TatI WGTACW 1 cut(s) 544
TfiI GAWTC 1 cut(s) 596
Tru1I TTAA 1 cut(s) 494
Tru9I TTAA 1 cut(s) 494
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 349, 615
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 648
XspI CTAG 2 cut(s) 612, 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.