MADS-box protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| K-box | PF01486 | 51 - 130 | 3.1e-13 | K-box region |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 182, 205 |
| AclWI | GGATC | 3 cut(s) | 184, 228, 505 |
| AcuI | CTGAAG | 1 cut(s) | 117 |
| AfaI | GTAC | 2 cut(s) | 61, 83 |
| AgsI | TTSAA | 4 cut(s) | 169, 272, 296, 338 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 453, 485 |
| AluBI | AGCT | 5 cut(s) | 136, 142, 199, 232, 422 |
| AluI | AGCT | 5 cut(s) | 136, 142, 199, 232, 422 |
| Alw21I | GWGCWC | 1 cut(s) | 138 |
| AlwI | GGATC | 3 cut(s) | 184, 228, 505 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 328 |
| Ama87I | CYCGRG | 1 cut(s) | 194 |
| ApeKI | GCWGC | 1 cut(s) | 121 |
| AseI | ATTAAT | 1 cut(s) | 150 |
| AsuHPI | GGTGA | 1 cut(s) | 559 |
| AvaI | CYCGRG | 1 cut(s) | 194 |
| BanII | GRGCYC | 1 cut(s) | 138 |
| Bbv12I | GWGCWC | 1 cut(s) | 138 |
| BbvI | GCAGC | 1 cut(s) | 133 |
| BccI | CCATC | 2 cut(s) | 202, 404 |
| BceAI | ACGGC | 2 cut(s) | 270, 587 |
| BfaI | CTAG | 3 cut(s) | 200, 224, 504 |
| BglII | AGATCT | 1 cut(s) | 447 |
| BisI | GCNGC | 1 cut(s) | 122 |
| BlsI | GCNGC | 1 cut(s) | 123 |
| BmeT110I | CYCGRG | 1 cut(s) | 194 |
| BmiI | GGNNCC | 1 cut(s) | 528 |
| BmsI | GCATC | 1 cut(s) | 384 |
| BpmI | CTGGAG | 2 cut(s) | 122, 164 |
| Bpu10I | CCTNAGC | 1 cut(s) | 132 |
| BsaJI | CCNNGG | 1 cut(s) | 50 |
| Bse1I | ACTGG | 1 cut(s) | 485 |
| Bse3DI | GCAATG | 1 cut(s) | 72 |
| BseDI | CCNNGG | 1 cut(s) | 50 |
| BseGI | GGATG | 3 cut(s) | 73, 213, 399 |
| BseMI | GCAATG | 1 cut(s) | 72 |
| BseMII | CTCAG | 2 cut(s) | 123, 295 |
| BseNI | ACTGG | 1 cut(s) | 485 |
| BseXI | GCAGC | 1 cut(s) | 133 |
| BsgI | GTGCAG | 1 cut(s) | 76 |
| BsiHKAI | GWGCWC | 1 cut(s) | 138 |
| BsiHKCI | CYCGRG | 1 cut(s) | 194 |
| BsoBI | CYCGRG | 1 cut(s) | 194 |
| Bsp1286I | GDGCHC | 1 cut(s) | 138 |
| Bsp143I | GATC | 4 cut(s) | 189, 220, 447, 497 |
| BspACI | CCGC | 2 cut(s) | 182, 205 |
| BspCNI | CTCAG | 2 cut(s) | 124, 294 |
| BspLI | GGNNCC | 1 cut(s) | 528 |
| BspPI | GGATC | 3 cut(s) | 184, 228, 505 |
| BspQI | GCTCTTC | 1 cut(s) | 222 |
| BsrDI | GCAATG | 1 cut(s) | 72 |
| BsrI | ACTGG | 1 cut(s) | 485 |
| BssECI | CCNNGG | 1 cut(s) | 50 |
| BssMI | GATC | 4 cut(s) | 189, 220, 447, 497 |
| BssT1I | CCWWGG | 1 cut(s) | 50 |
| Bst4CI | ACNGT | 1 cut(s) | 547 |
| Bst6I | CTCTTC | 2 cut(s) | 222, 559 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 35 |
| BstDEI | CTNAG | 2 cut(s) | 132, 281 |
| BstF5I | GGATG | 3 cut(s) | 73, 213, 399 |
| BstKTI | GATC | 4 cut(s) | 192, 223, 450, 500 |
| BstMBI | GATC | 4 cut(s) | 189, 220, 447, 497 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 35 |
| BstV1I | GCAGC | 1 cut(s) | 133 |
| BstX2I | RGATCY | 3 cut(s) | 189, 220, 447 |
| BstYI | RGATCY | 3 cut(s) | 189, 220, 447 |
| BtsCI | GGATG | 3 cut(s) | 73, 213, 399 |
| BtsIMutI | CAGTG | 1 cut(s) | 93 |
| CaiI | CAGNNNCTG | 1 cut(s) | 328 |
| Csp6I | GTAC | 2 cut(s) | 60, 82 |
| CviAII | CATG | 1 cut(s) | 160 |
| CviQI | GTAC | 2 cut(s) | 60, 82 |
| DdeI | CTNAG | 2 cut(s) | 132, 281 |
| DpnI | GATC | 4 cut(s) | 191, 222, 449, 499 |
| DpnII | GATC | 4 cut(s) | 189, 220, 447, 497 |
| Eam1104I | CTCTTC | 2 cut(s) | 222, 559 |
| EarI | CTCTTC | 2 cut(s) | 222, 559 |
| EciI | GGCGGA | 1 cut(s) | 220 |
| Ecl136II | GAGCTC | 1 cut(s) | 136 |
| Eco130I | CCWWGG | 1 cut(s) | 50 |
| Eco24I | GRGCYC | 1 cut(s) | 138 |
| Eco53kI | GAGCTC | 1 cut(s) | 136 |
| Eco57I | CTGAAG | 1 cut(s) | 117 |
| Eco88I | CYCGRG | 1 cut(s) | 194 |
| EcoICRI | GAGCTC | 1 cut(s) | 136 |
| EcoT14I | CCWWGG | 1 cut(s) | 50 |
| EcoT38I | GRGCYC | 1 cut(s) | 138 |
| ErhI | CCWWGG | 1 cut(s) | 50 |
| FaeI | CATG | 1 cut(s) | 163 |
| FaiI | YATR | 5 cut(s) | 161, 239, 317, 514, 591 |
| FatI | CATG | 1 cut(s) | 159 |
| Fnu4HI | GCNGC | 1 cut(s) | 122 |
| FokI | GGATG | 3 cut(s) | 80, 220, 406 |
| FriOI | GRGCYC | 1 cut(s) | 138 |
| Fsp4HI | GCNGC | 1 cut(s) | 122 |
| FspBI | CTAG | 3 cut(s) | 200, 224, 504 |
| GluI | GCNGC | 1 cut(s) | 122 |
| GsuI | CTGGAG | 2 cut(s) | 122, 164 |
| Hin1II | CATG | 1 cut(s) | 163 |
| HincII | GTYRAC | 1 cut(s) | 357 |
| HindII | GTYRAC | 1 cut(s) | 357 |
| HinfI | GANTC | 4 cut(s) | 279, 319, 325, 440 |
| HphI | GGTGA | 1 cut(s) | 559 |
| Hpy166II | GTNNAC | 2 cut(s) | 357, 538 |
| Hpy188I | TCNGA | 2 cut(s) | 324, 445 |
| Hpy188III | TCNNGA | 2 cut(s) | 131, 224 |
| Hpy8I | GTNNAC | 2 cut(s) | 357, 538 |
| HpyAV | CCTTC | 4 cut(s) | 58, 266, 295, 478 |
| HpyCH4III | ACNGT | 1 cut(s) | 547 |
| HpyCH4V | TGCA | 6 cut(s) | 29, 57, 77, 91, 159, 250 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 35 |
| HpyF3I | CTNAG | 2 cut(s) | 132, 281 |
| Hsp92II | CATG | 1 cut(s) | 163 |
| Kzo9I | GATC | 4 cut(s) | 189, 220, 447, 497 |
| LguI | GCTCTTC | 1 cut(s) | 222 |
| LmnI | GCTCC | 2 cut(s) | 141, 347 |
| LpnPI | CCDG | 8 cut(s) | 128, 131, 144, 152, 203, 314, 408, 466 |
| Lsp1109I | GCAGC | 1 cut(s) | 133 |
| LweI | GCATC | 1 cut(s) | 384 |
| MaeI | CTAG | 3 cut(s) | 200, 224, 504 |
| MalI | GATC | 4 cut(s) | 191, 222, 449, 499 |
| MboI | GATC | 4 cut(s) | 189, 220, 447, 497 |
| MboII | GAAGA | 5 cut(s) | 110, 239, 473, 476, 576 |
| MflI | RGATCY | 3 cut(s) | 189, 220, 447 |
| MhlI | GDGCHC | 1 cut(s) | 138 |
| MluCI | AATT | 3 cut(s) | 86, 245, 374 |
| MlyI | GAGTC | 3 cut(s) | 273, 328, 449 |
| MmeI | TCCRAC | 1 cut(s) | 423 |
| MnlI | CCTC | 8 cut(s) | 138, 156, 203, 205, 269, 378, 518, 540 |
| MseI | TTAA | 3 cut(s) | 150, 377, 522 |
| MslI | CAYNNNNRTG | 1 cut(s) | 24 |
| MspA1I | CMGCKG | 1 cut(s) | 142 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 35 |
| NdeII | GATC | 4 cut(s) | 189, 220, 447, 497 |
| NlaIII | CATG | 1 cut(s) | 163 |
| NlaIV | GGNNCC | 1 cut(s) | 528 |
| PaeR7I | CTCGAG | 1 cut(s) | 194 |
| PciSI | GCTCTTC | 1 cut(s) | 222 |
| PfeI | GAWTC | 1 cut(s) | 325 |
| PkrI | GCNGC | 1 cut(s) | 123 |
| PleI | GAGTC | 3 cut(s) | 273, 327, 448 |
| PpsI | GAGTC | 3 cut(s) | 273, 327, 448 |
| PshBI | ATTAAT | 1 cut(s) | 150 |
| Psp124BI | GAGCTC | 1 cut(s) | 138 |
| PspN4I | GGNNCC | 1 cut(s) | 528 |
| PspXI | VCTCGAGB | 1 cut(s) | 194 |
| PstNI | CAGNNNCTG | 1 cut(s) | 328 |
| PsuI | RGATCY | 3 cut(s) | 189, 220, 447 |
| PvuII | CAGCTG | 1 cut(s) | 142 |
| RsaI | GTAC | 2 cut(s) | 61, 83 |
| RsaNI | GTAC | 2 cut(s) | 60, 82 |
| RseI | CAYNNNNRTG | 1 cut(s) | 24 |
| SacI | GAGCTC | 1 cut(s) | 138 |
| SapI | GCTCTTC | 1 cut(s) | 222 |
| SaqAI | TTAA | 3 cut(s) | 150, 377, 522 |
| SatI | GCNGC | 1 cut(s) | 122 |
| Sau3AI | GATC | 4 cut(s) | 189, 220, 447, 497 |
| SchI | GAGTC | 3 cut(s) | 273, 328, 449 |
| SduI | GDGCHC | 1 cut(s) | 138 |
| SfaNI | GCATC | 1 cut(s) | 384 |
| Sfr274I | CTCGAG | 1 cut(s) | 194 |
| SlaI | CTCGAG | 1 cut(s) | 194 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 24 |
| SmlI | CTYRAG | 1 cut(s) | 194 |
| SmoI | CTYRAG | 1 cut(s) | 194 |
| Sse9I | AATT | 3 cut(s) | 86, 245, 374 |
| SsiI | CCGC | 2 cut(s) | 182, 205 |
| SspMI | CTAG | 3 cut(s) | 200, 224, 504 |
| SstI | GAGCTC | 1 cut(s) | 138 |
| StyI | CCWWGG | 1 cut(s) | 50 |
| TaaI | ACNGT | 1 cut(s) | 547 |
| TaqI | TCGA | 1 cut(s) | 195 |
| TasI | AATT | 3 cut(s) | 86, 245, 374 |
| TfiI | GAWTC | 1 cut(s) | 325 |
| Tru1I | TTAA | 3 cut(s) | 150, 377, 522 |
| Tru9I | TTAA | 3 cut(s) | 150, 377, 522 |
| TscAI | CASTG | 1 cut(s) | 100 |
| TseI | GCWGC | 1 cut(s) | 121 |
| TspDTI | ATGAA | 2 cut(s) | 258, 474 |
| TspGWI | ACGGA | 1 cut(s) | 555 |
| TspRI | CASTG | 1 cut(s) | 100 |
| VspI | ATTAAT | 1 cut(s) | 150 |
| XbaI | TCTAGA | 1 cut(s) | 223 |
| XhoI | CTCGAG | 1 cut(s) | 194 |
| XspI | CTAG | 3 cut(s) | 200, 224, 504 |