Rorug04G0281000
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000389
Physical Location & Seq
Reverse (-)
45460610 .. 45464422
3813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0281000.1

Sequence Viewer

Length: 1440 bp
ATGGAAAGCTTTGGTGGCTCTGGATTTTCTGCTGGAGGATGCATTGTAAGGAAGAAAAGGAGTGTTGTATTGCATAAACCTCGCTTGGATCCACTCACATTTTCTGAGAGGTCTAATATCTTGCTACGAATTGTACATCCCTTTGGCAAAGAAAGCCTTGATAAGAATCATGATAGTAAGGAGAAAGGAGTGCATTCTGATGGACTGCGAAGTGAGAAAAGGCCGAAGAAATTAAAGCTTAAGCTTCGAGGTGTTACTCATACAATCCAAACCAAGTGTACAGTTGATTCTAGTCTTGGTGGTGGCTCTTCCATACCTAAATCCTCATGCCCTTCCGATGACTTCATACCCCAACCGAAGCCACTTCTCCAGGATGGCAAACCCTTCTGTTCTTCTGATGGAGGCAAAGGCATTGGAGTTAAACGGAAATACTCCTTGAAATTTGACTCTACCTTGAGAAAGGAGTATTCTTTGAAAGGTAAAATCTCCAGGGAAAGTGTTCCTGAGGATGGTGAACCAGCTCGTAAGAGCAAGAGGATTCCTAGGAGACGTGTCTTGGATGTGGGACTTAGTGAAGATGGTAATGAAGATGGTGAAATTCGATTCCTTGAAAGACTAAATGCTTCTAAGGTTGCTCTTTCAAAAAGAAATCAAATGGATGGCGATCATGGAGGTGATATTGGAAACTGTAAATTACCAAGGCTGCGGAAACATGGTGGAATAAAGTCAAGATCAGAAAAAATGTACGAGGATAAATACTATTTGGGAGAAGAAGAAGAACTGACATCTGATGATGAACTTCAATCTAATGGGAAGATGCTGAAAAGGGGATCTCTTAGTTTACTTCTGGAAGGGCCGCAAAAGTCCACTCCCACCACACGTAACCGGGCCCTTCAGTCTGGGATAGATATCTTAACTGGTTCTGGTTCAAGCGTTGTTAACCCTGCAAATCTGTTGCTTCCTGCCCCATCTAGAAAAAAGAAGGAGAAAATCTCTGAAGTGGATAAGCAATCGAAGAAAGCCGAGGCTGCACAGAGACGTAAAATACAAACAGAGAAGATAGCTAGAGAAGCTGAGGCTGAGGCAATCAGAAAGATACTTGGTCAAGATTCGAAGAAGAAGAAGAGGGAAGAAGAACTGAAGCAGAAGAGGGATGAATTGTCACAGGGGAGGAATGGCAGTGCTGTCACACTGGCACCAAACACTGTCCGATGGGTCAATGGTCCTAATGGAACGGTTGTTACATTCTCTGATGATATTGGTCTGCCGAACATTTTCAGTCCAGTGCCCTGCAGCTACCCTCCCCCACGTGAAAAATGTGCTGGTCCAAATTGTACAAATGCATACAAGTATCGGGATTCTAAGTCCAAGCTCCCCCTTTGCAGTCTCCACTGCTACAGGGCATTGCACGGAAAGACGCAGCCTCTAATTGCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

479

Amino Acids

52.92

Weight (kDa)

9.73

Isoelectric Point (pI)

55.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAPA-1 PF04795 336 - 419 4.4e-19 PAPA-1-like conserved region
zf-HIT PF04438 436 - 467 2.1e-06 HIT zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1195
AciI CCGC 2 cut(s) 706, 857
AclWI GGATC 3 cut(s) 83, 96, 838
AcsI RAATTY 2 cut(s) 440, 597
AcuI CTGAAG 3 cut(s) 878, 1017, 1160
AcvI CACGTG 1 cut(s) 1310
AfaI GTAC 4 cut(s) 135, 280, 746, 1336
AfiI CCNNNNNNNGG 1 cut(s) 509
AflII CTTAAG 1 cut(s) 239
AflIII ACRYGT 2 cut(s) 550, 878
AgsI TTSAA 6 cut(s) 439, 475, 611, 642, 803, 930
AjiI CACGTC 1 cut(s) 551
AjnI CCWGG 2 cut(s) 369, 488
AluBI AGCT 8 cut(s) 9, 238, 244, 521, 1064, 1073, 1296, 1372
AluI AGCT 8 cut(s) 9, 238, 244, 521, 1064, 1073, 1296, 1372
Alw26I GTCTC 3 cut(s) 541, 1030, 1391
AlwI GGATC 3 cut(s) 83, 96, 838
AoxI GGCC 3 cut(s) 221, 854, 888
ApaI GGGCCC 1 cut(s) 892
ApeKI GCWGC 4 cut(s) 703, 1028, 1293, 1420
ApoI RAATTY 2 cut(s) 440, 597
Asp700I GAANNNNTTC 2 cut(s) 498, 1274
AspA2I CCTAGG 1 cut(s) 542
AspS9I GGNCC 5 cut(s) 854, 888, 889, 1223, 1325
AsuC2I CCSGG 1 cut(s) 887
AsuHPI GGTGA 3 cut(s) 524, 605, 686
AsuII TTCGAA 1 cut(s) 1112
AvaII GGWCC 2 cut(s) 1223, 1325
AvrII CCTAGG 1 cut(s) 542
AxyI CCTNAGG 1 cut(s) 504
BaeGI GKGCMC 2 cut(s) 892, 1290
BamHI GGATCC 1 cut(s) 88
BanI GGYRCC 1 cut(s) 1195
BanII GRGCYC 1 cut(s) 892
BbrPI CACGTG 1 cut(s) 1310
BbvCI CCTCAGC 2 cut(s) 1074, 1080
BbvI GCAGC 4 cut(s) 690, 1015, 1305, 1432
BccI CCATC 9 cut(s) 194, 368, 392, 503, 572, 584, 653, 976, 1206
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciT130I CCWGG 2 cut(s) 371, 490
BcnI CCSGG 1 cut(s) 887
BcoDI GTCTC 3 cut(s) 541, 1030, 1391
BfaI CTAG 4 cut(s) 291, 543, 972, 1065
BfmI CTRYAG 2 cut(s) 1291, 1396
BfrI CTTAAG 1 cut(s) 239
BisI GCNGC 5 cut(s) 704, 857, 1029, 1294, 1421
BlnI CCTAGG 1 cut(s) 542
BlsI GCNGC 5 cut(s) 705, 858, 1030, 1295, 1422
Bme1390I CCNGG 3 cut(s) 371, 490, 887
Bme18I GGWCC 2 cut(s) 1223, 1325
BmgBI CACGTC 1 cut(s) 551
BmgT120I GGNCC 5 cut(s) 854, 888, 889, 1223, 1325
BmiI GGNNCC 3 cut(s) 90, 890, 1197
BmrFI CCNGG 3 cut(s) 371, 490, 887
BmsI GCATC 2 cut(s) 29, 807
BplI GAGNNNNNCTC 2 cut(s) 977, 1009
BpmI CTGGAG 3 cut(s) 54, 353, 472
Bpu10I CCTNAGC 2 cut(s) 1074, 1080
Bpu14I TTCGAA 1 cut(s) 1112
BpuEI CTTGAG 1 cut(s) 475
BpuMI CCSGG 1 cut(s) 887
BsaAI YACGTR 2 cut(s) 881, 1310
BsaBI GATNNNNATC 3 cut(s) 165, 663, 908
BsaJI CCNNGG 4 cut(s) 489, 542, 698, 1023
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse1I ACTGG 3 cut(s) 922, 1197, 1283
Bse21I CCTNAGG 1 cut(s) 504
Bse3DI GCAATG 1 cut(s) 1403
Bse8I GATNNNNATC 3 cut(s) 165, 663, 908
BseBI CCWGG 2 cut(s) 371, 490
BseDI CCNNGG 4 cut(s) 489, 542, 698, 1023
BseGI GGATG 7 cut(s) 44, 136, 379, 514, 565, 664, 1159
BseJI GATNNNNATC 3 cut(s) 165, 663, 908
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMI GCAATG 1 cut(s) 1403
BseMII CTCAG 4 cut(s) 96, 495, 1065, 1071
BseNI ACTGG 3 cut(s) 922, 1197, 1283
BseSI GKGCMC 2 cut(s) 892, 1290
BseXI GCAGC 4 cut(s) 690, 1015, 1305, 1432
BsgI GTGCAG 1 cut(s) 1014
BshFI GGCC 3 cut(s) 223, 856, 890
BshNI GGYRCC 1 cut(s) 1195
BsiSI CCGG 1 cut(s) 886
BslFI GGGAC 1 cut(s) 579
BslI CCNNNNNNNGG 1 cut(s) 509
BsmAI GTCTC 3 cut(s) 541, 1030, 1391
BsmBI CGTCTC 2 cut(s) 541, 1030
BsmFI GGGAC 1 cut(s) 579
BsmI GAATGC 1 cut(s) 193
BsnI GGCC 3 cut(s) 223, 856, 890
Bsp119I TTCGAA 1 cut(s) 1112
Bsp120I GGGCCC 1 cut(s) 888
Bsp1286I GDGCHC 2 cut(s) 892, 1290
Bsp1407I TGTACA 3 cut(s) 133, 278, 1334
Bsp143I GATC 4 cut(s) 88, 664, 731, 830
BspACI CCGC 2 cut(s) 706, 857
BspANI GGCC 3 cut(s) 223, 856, 890
BspCNI CTCAG 4 cut(s) 97, 496, 1066, 1072
BspHI TCATGA 1 cut(s) 169
BspLI GGNNCC 3 cut(s) 90, 890, 1197
BspMAI CTGCAG 1 cut(s) 1295
BspPI GGATC 3 cut(s) 83, 96, 838
BspQI GCTCTTC 1 cut(s) 313
BspT104I TTCGAA 1 cut(s) 1112
BspT107I GGYRCC 1 cut(s) 1195
BspTI CTTAAG 1 cut(s) 239
BsrDI GCAATG 1 cut(s) 1403
BsrGI TGTACA 3 cut(s) 133, 278, 1334
BsrI ACTGG 3 cut(s) 922, 1197, 1283
BssECI CCNNGG 4 cut(s) 489, 542, 698, 1023
BssMI GATC 4 cut(s) 88, 664, 731, 830
BssT1I CCWWGG 2 cut(s) 542, 698
Bst2UI CCWGG 2 cut(s) 371, 490
Bst4CI ACNGT 4 cut(s) 283, 689, 1207, 1237
Bst6I CTCTTC 3 cut(s) 313, 1118, 1142
BstAFI CTTAAG 1 cut(s) 239
BstAUI TGTACA 3 cut(s) 133, 278, 1334
BstBAI YACGTR 2 cut(s) 881, 1310
BstBI TTCGAA 1 cut(s) 1112
BstDEI CTNAG 8 cut(s) 105, 504, 569, 627, 836, 1074, 1080, 1362
BstF5I GGATG 7 cut(s) 44, 136, 379, 514, 565, 664, 1159
BstKTI GATC 4 cut(s) 91, 667, 734, 833
BstMAI GTCTC 3 cut(s) 541, 1030, 1391
BstMBI GATC 4 cut(s) 88, 664, 731, 830
BstMWI GCNNNNNNNGC 4 cut(s) 15, 153, 1028, 1070
BstNI CCWGG 2 cut(s) 371, 490
BstSCI CCNGG 3 cut(s) 369, 488, 885
BstSFI CTRYAG 2 cut(s) 1291, 1396
BstSLI GKGCMC 2 cut(s) 892, 1290
BstV1I GCAGC 4 cut(s) 690, 1015, 1305, 1432
BstX2I RGATCY 2 cut(s) 88, 830
BstYI RGATCY 2 cut(s) 88, 830
Bsu36I CCTNAGG 1 cut(s) 504
BsuRI GGCC 3 cut(s) 223, 856, 890
BtrI CACGTC 1 cut(s) 551
BtsCI GGATG 7 cut(s) 44, 136, 379, 514, 565, 664, 1159
BtsI GCAGTG 2 cut(s) 1186, 1390
BtsIMutI CAGTG 5 cut(s) 1186, 1190, 1203, 1290, 1390
CciI TCATGA 1 cut(s) 169
Cfr13I GGNCC 5 cut(s) 854, 888, 889, 1223, 1325
CseI GACGC 1 cut(s) 1426
Csp6I GTAC 4 cut(s) 134, 279, 745, 1335
CviAII CATG 4 cut(s) 170, 327, 668, 713
CviQI GTAC 4 cut(s) 134, 279, 745, 1335
DdeI CTNAG 8 cut(s) 105, 504, 569, 627, 836, 1074, 1080, 1362
DpnI GATC 4 cut(s) 90, 666, 733, 832
DpnII GATC 4 cut(s) 88, 664, 731, 830
Eam1104I CTCTTC 3 cut(s) 313, 1118, 1142
EarI CTCTTC 3 cut(s) 313, 1118, 1142
Eco130I CCWWGG 2 cut(s) 542, 698
Eco24I GRGCYC 1 cut(s) 892
Eco32I GATATC 1 cut(s) 910
Eco47I GGWCC 2 cut(s) 1223, 1325
Eco57I CTGAAG 3 cut(s) 878, 1017, 1160
Eco72I CACGTG 1 cut(s) 1310
Eco81I CCTNAGG 1 cut(s) 504
EcoO109I RGGNCCY 1 cut(s) 889
EcoRII CCWGG 2 cut(s) 369, 488
EcoRV GATATC 1 cut(s) 910
EcoT14I CCWWGG 2 cut(s) 542, 698
EcoT22I ATGCAT 2 cut(s) 44, 1345
EcoT38I GRGCYC 1 cut(s) 892
ErhI CCWWGG 2 cut(s) 542, 698
Esp3I CGTCTC 2 cut(s) 541, 1030
FaeI CATG 4 cut(s) 173, 330, 671, 716
FaiI YATR 9 cut(s) 75, 171, 261, 314, 328, 347, 669, 714, 1345
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FaqI GGGAC 1 cut(s) 579
FatI CATG 4 cut(s) 169, 326, 667, 712
Fnu4HI GCNGC 5 cut(s) 704, 857, 1029, 1294, 1421
FokI GGATG 7 cut(s) 51, 123, 386, 521, 572, 671, 1166
FriOI GRGCYC 1 cut(s) 892
Fsp4HI GCNGC 5 cut(s) 704, 857, 1029, 1294, 1421
FspBI CTAG 4 cut(s) 291, 543, 972, 1065
GluI GCNGC 5 cut(s) 704, 857, 1029, 1294, 1421
GsuI CTGGAG 3 cut(s) 54, 353, 472
HaeIII GGCC 3 cut(s) 223, 856, 890
HapII CCGG 1 cut(s) 886
HgaI GACGC 1 cut(s) 1426
Hin1II CATG 4 cut(s) 173, 330, 671, 716
HincII GTYRAC 1 cut(s) 940
HindII GTYRAC 1 cut(s) 940
HindIII AAGCTT 3 cut(s) 7, 236, 242
HinfI GANTC 7 cut(s) 166, 287, 446, 538, 603, 1109, 1358
HpaI GTTAAC 1 cut(s) 940
HpaII CCGG 1 cut(s) 886
HphI GGTGA 3 cut(s) 524, 605, 686
Hpy166II GTNNAC 5 cut(s) 279, 515, 842, 867, 940
Hpy188III TCNNGA 8 cut(s) 21, 170, 503, 729, 848, 972, 1106, 1355
Hpy8I GTNNAC 5 cut(s) 279, 515, 842, 867, 940
HpyAV CCTTC 5 cut(s) 342, 394, 845, 902, 976
HpyCH4III ACNGT 4 cut(s) 283, 689, 1207, 1237
HpyCH4IV ACGT 4 cut(s) 550, 880, 1039, 1309
HpyCH4V TGCA 9 cut(s) 42, 73, 193, 947, 1031, 1293, 1343, 1383, 1408
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 153, 1028, 1070
HpyF3I CTNAG 8 cut(s) 105, 504, 569, 627, 836, 1074, 1080, 1362
HpySE526I ACGT 4 cut(s) 550, 880, 1039, 1309
Hsp92II CATG 4 cut(s) 173, 330, 671, 716
KspAI GTTAAC 1 cut(s) 940
Kzo9I GATC 4 cut(s) 88, 664, 731, 830
LguI GCTCTTC 1 cut(s) 313
LmnI GCTCC 1 cut(s) 1377
Lsp1109I GCAGC 4 cut(s) 690, 1015, 1305, 1432
LweI GCATC 2 cut(s) 29, 807
MaeI CTAG 4 cut(s) 291, 543, 972, 1065
MaeII ACGT 4 cut(s) 550, 880, 1039, 1309
MaeIII GTNAC 5 cut(s) 253, 881, 1161, 1186, 1240
MalI GATC 4 cut(s) 90, 666, 733, 832
MboI GATC 4 cut(s) 88, 664, 731, 830
MflI RGATCY 2 cut(s) 88, 830
MhlI GDGCHC 2 cut(s) 892, 1290
MluCI AATT 8 cut(s) 129, 230, 440, 597, 692, 1157, 1330, 1428
MlyI GAGTC 1 cut(s) 440
Mph1103I ATGCAT 2 cut(s) 44, 1345
MroXI GAANNNNTTC 2 cut(s) 498, 1274
MseI TTAA 5 cut(s) 233, 240, 420, 914, 939
MslI CAYNNNNRTG 2 cut(s) 198, 672
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 1 cut(s) 886
MspR9I CCNGG 3 cut(s) 371, 490, 887
Mva1269I GAATGC 1 cut(s) 193
MvaI CCWGG 2 cut(s) 371, 490
MwoI GCNNNNNNNGC 4 cut(s) 15, 153, 1028, 1070
NciI CCSGG 1 cut(s) 887
NdeII GATC 4 cut(s) 88, 664, 731, 830
NlaIII CATG 4 cut(s) 173, 330, 671, 716
NlaIV GGNNCC 3 cut(s) 90, 890, 1197
NmeAIII GCCGAG 1 cut(s) 1048
NmuCI GTSAC 2 cut(s) 1161, 1186
NsiI ATGCAT 2 cut(s) 44, 1345
NspV TTCGAA 1 cut(s) 1112
PagI TCATGA 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 313
PctI GAATGC 1 cut(s) 193
PdmI GAANNNNTTC 2 cut(s) 498, 1274
PfeI GAWTC 6 cut(s) 166, 287, 538, 603, 1109, 1358
PfoI TCCNGGA 1 cut(s) 369
PkrI GCNGC 5 cut(s) 705, 858, 1030, 1295, 1422
PleI GAGTC 1 cut(s) 440
PmaCI CACGTG 1 cut(s) 1310
PmlI CACGTG 1 cut(s) 1310
PpsI GAGTC 1 cut(s) 440
Ppu21I YACGTR 2 cut(s) 881, 1310
Psp6I CCWGG 2 cut(s) 369, 488
PspCI CACGTG 1 cut(s) 1310
PspGI CCWGG 2 cut(s) 369, 488
PspN4I GGNNCC 3 cut(s) 90, 890, 1197
PspOMI GGGCCC 1 cut(s) 888
PspPI GGNCC 5 cut(s) 854, 888, 889, 1223, 1325
PsrI GAACNNNNNNTAC 2 cut(s) 1225, 1257
PstI CTGCAG 1 cut(s) 1295
PsuI RGATCY 2 cut(s) 88, 830
RsaI GTAC 4 cut(s) 135, 280, 746, 1336
RsaNI GTAC 4 cut(s) 134, 279, 745, 1335
RseI CAYNNNNRTG 2 cut(s) 198, 672
SapI GCTCTTC 1 cut(s) 313
SaqAI TTAA 5 cut(s) 233, 240, 420, 914, 939
SatI GCNGC 5 cut(s) 704, 857, 1029, 1294, 1421
Sau3AI GATC 4 cut(s) 88, 664, 731, 830
Sau96I GGNCC 5 cut(s) 854, 888, 889, 1223, 1325
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 3 cut(s) 371, 490, 887
SduI GDGCHC 2 cut(s) 892, 1290
SfaNI GCATC 2 cut(s) 29, 807
SfcI CTRYAG 2 cut(s) 1291, 1396
SfuI TTCGAA 1 cut(s) 1112
SinI GGWCC 2 cut(s) 1223, 1325
SmiMI CAYNNNNRTG 2 cut(s) 198, 672
SmlI CTYRAG 2 cut(s) 239, 454
SmoI CTYRAG 2 cut(s) 239, 454
Sse9I AATT 8 cut(s) 129, 230, 440, 597, 692, 1157, 1330, 1428
SsiI CCGC 2 cut(s) 706, 857
SspMI CTAG 4 cut(s) 291, 543, 972, 1065
StyD4I CCNGG 3 cut(s) 369, 488, 885
StyI CCWWGG 2 cut(s) 542, 698
TaaI ACNGT 4 cut(s) 283, 689, 1207, 1237
TaiI ACGT 4 cut(s) 553, 883, 1042, 1312
TaqI TCGA 4 cut(s) 247, 601, 1013, 1112
TasI AATT 8 cut(s) 129, 230, 440, 597, 692, 1157, 1330, 1428
TatI WGTACW 3 cut(s) 133, 278, 1334
TauI GCSGC 1 cut(s) 859
TfiI GAWTC 6 cut(s) 166, 287, 538, 603, 1109, 1358
Tru1I TTAA 5 cut(s) 233, 240, 420, 914, 939
Tru9I TTAA 5 cut(s) 233, 240, 420, 914, 939
TscAI CASTG 5 cut(s) 1186, 1197, 1210, 1290, 1397
TseFI GTSAC 2 cut(s) 1161, 1186
TseI GCWGC 4 cut(s) 703, 1028, 1293, 1420
Tsp45I GTSAC 2 cut(s) 1161, 1186
TspDTI ATGAA 4 cut(s) 334, 600, 810, 1170
TspGWI ACGGA 2 cut(s) 439, 1425
TspRI CASTG 5 cut(s) 1186, 1197, 1210, 1290, 1397
Vha464I CTTAAG 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 1223, 1325
XapI RAATTY 2 cut(s) 440, 597
XbaI TCTAGA 1 cut(s) 971
XmaJI CCTAGG 1 cut(s) 542
XmnI GAANNNNTTC 2 cut(s) 498, 1274
XspI CTAG 4 cut(s) 291, 543, 972, 1065
Zsp2I ATGCAT 2 cut(s) 44, 1345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.