FvH4_4g27110
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000389
Physical Location & Seq
Reverse (-)
28234752 .. 28241544
6793 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27110.t8

Sequence Viewer

Length: 675 bp
ATGAAGCCGGCGAGCAAGAAGATAAAGATCGAAAAGATTGACAACTTGCCGGCGAGGCAAGTGACGTATTCGAAGAGGAGAAGAGGGCTTCTGAAGAAAGCTAGCGAGCTTTCAATTCTCTGTGATTGTGAGTTTTCTGTCATCATCTTTTCTGCTACTGGCAAGCTCTGTGAGTCCTCCAGCTCCAGTACGAAGGATATCATCGCGAGGTATCAATCGCACACGGACAAGGTGGAAAACTTTGACCAGTCAACTCGTGAACTCCAGCTTCATTGCATCAACTTGAATAAGGAACTTGCGGACAAGAGCCGCGTGCTAAGGCAGATGAATGGAGAGGATCTTGAAGGGCTGAACATAGATGAGTTGCAGAGATTGGAGAAAGATATTGAAGGAAGTCTTGCCCGTGTGCTTCAAACTAAGGATGAAAAGTTTTTCAGTGAAATTCTAGCACTTGAGGCAAAGGGAACTGAATTGGAACAAGAGAATAACCAATTGAGGCGGGAGGTAGCGATGTTGTCCGATGGAAATGGTGTCATCTTGTCAGATATCTCGCCTGCTGAAGGAGGTTCCGTATCAGAGTCCGACACTGATGCTTACAGCTGCTTTTCTACTGGTTCTTCTGTAGATGATGACTCTGGCGCTGACACTTTATCTCTCAAACTTGGGCTTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

225

Amino Acids

24.75

Weight (kDa)

4.94

Isoelectric Point (pI)

50.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K-box PF01486 31 - 116 1.3e-16 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 206, 312
AciI CCGC 3 cut(s) 299, 310, 499
AclWI GGATC 1 cut(s) 345
AcsI RAATTY 1 cut(s) 441
AcuI CTGAAG 2 cut(s) 113, 579
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 560
AgsI TTSAA 5 cut(s) 114, 286, 344, 389, 413
AluBI AGCT 6 cut(s) 101, 109, 166, 183, 268, 600
AluI AGCT 6 cut(s) 101, 109, 166, 183, 268, 600
AlwI GGATC 1 cut(s) 345
ApeKI GCWGC 1 cut(s) 600
ApoI RAATTY 1 cut(s) 441
AspLEI GCGC 1 cut(s) 641
AsuII TTCGAA 1 cut(s) 71
AsuNHI GCTAGC 1 cut(s) 101
BauI CACGAG 1 cut(s) 255
BbvI GCAGC 1 cut(s) 587
BccI CCATC 1 cut(s) 515
BcgI CGANNNNNNTGC 2 cut(s) 572, 606
BfaI CTAG 2 cut(s) 102, 446
BfmI CTRYAG 1 cut(s) 621
BfoI RGCGCY 1 cut(s) 642
BglI GCCNNNNNGGC 1 cut(s) 55
BisI GCNGC 2 cut(s) 310, 601
BlsI GCNGC 2 cut(s) 311, 602
BmiI GGNNCC 1 cut(s) 568
BmsI GCATC 2 cut(s) 285, 580
BmtI GCTAGC 1 cut(s) 105
BpmI CTGGAG 3 cut(s) 163, 169, 248
Bpu10I CCTNAGC 1 cut(s) 317
Bpu14I TTCGAA 1 cut(s) 71
BpuEI CTTGAG 1 cut(s) 473
BsaBI GATNNNNATC 1 cut(s) 26
BsaXI ACNNNNNCTCC 2 cut(s) 555, 585
Bsc4I CCNNNNNNNGG 1 cut(s) 560
Bse118I RCCGGY 2 cut(s) 7, 49
Bse1I ACTGG 4 cut(s) 163, 186, 247, 616
Bse3DI GCAATG 1 cut(s) 271
Bse8I GATNNNNATC 1 cut(s) 26
BseGI GGATG 1 cut(s) 427
BseJI GATNNNNATC 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 560
BseMI GCAATG 1 cut(s) 271
BseNI ACTGG 4 cut(s) 163, 186, 247, 616
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 587
Bsh1236I CGCG 2 cut(s) 206, 312
BsiSI CCGG 2 cut(s) 8, 50
BslI CCNNNNNNNGG 1 cut(s) 560
Bsp119I TTCGAA 1 cut(s) 71
Bsp143I GATC 2 cut(s) 27, 337
Bsp68I TCGCGA 1 cut(s) 206
BspACI CCGC 3 cut(s) 299, 310, 499
BspFNI CGCG 2 cut(s) 206, 312
BspLI GGNNCC 1 cut(s) 568
BspOI GCTAGC 1 cut(s) 105
BspPI GGATC 1 cut(s) 345
BspT104I TTCGAA 1 cut(s) 71
BsrDI GCAATG 1 cut(s) 271
BsrFI RCCGGY 2 cut(s) 7, 49
BsrI ACTGG 4 cut(s) 163, 186, 247, 616
BssAI RCCGGY 2 cut(s) 7, 49
BssMI GATC 2 cut(s) 27, 337
BssSI CACGAG 1 cut(s) 255
Bst2BI CACGAG 1 cut(s) 255
Bst6I CTCTTC 2 cut(s) 68, 76
BstBI TTCGAA 1 cut(s) 71
BstC8I GCNNGC 8 cut(s) 9, 13, 51, 103, 107, 164, 314, 555
BstDEI CTNAG 2 cut(s) 317, 417
BstENI CCTNNNNNAGG 1 cut(s) 558
BstF5I GGATG 1 cut(s) 427
BstFNI CGCG 2 cut(s) 206, 312
BstH2I RGCGCY 1 cut(s) 642
BstHHI GCGC 1 cut(s) 641
BstKTI GATC 2 cut(s) 30, 340
BstMBI GATC 2 cut(s) 27, 337
BstMWI GCNNNNNNNGC 2 cut(s) 55, 455
BstSFI CTRYAG 1 cut(s) 621
BstUI CGCG 2 cut(s) 206, 312
BstV1I GCAGC 1 cut(s) 587
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BtgZI GCGATG 2 cut(s) 187, 524
BtsCI GGATG 1 cut(s) 427
BtsIMutI CAGTG 2 cut(s) 442, 585
BtuMI TCGCGA 1 cut(s) 206
Cac8I GCNNGC 8 cut(s) 9, 13, 51, 103, 107, 164, 314, 555
CfoI GCGC 1 cut(s) 641
Cfr10I RCCGGY 2 cut(s) 7, 49
Csp6I GTAC 1 cut(s) 189
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 2 cut(s) 317, 417
DpnI GATC 2 cut(s) 29, 339
DpnII GATC 2 cut(s) 27, 337
Eam1104I CTCTTC 2 cut(s) 68, 76
EarI CTCTTC 2 cut(s) 68, 76
Eco32I GATATC 2 cut(s) 199, 547
Eco57I CTGAAG 2 cut(s) 113, 579
EcoNI CCTNNNNNAGG 1 cut(s) 558
EcoRV GATATC 2 cut(s) 199, 547
FaiI YATR 1 cut(s) 356
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FauI CCCGC 1 cut(s) 492
Fnu4HI GCNGC 2 cut(s) 310, 601
FokI GGATG 1 cut(s) 434
Fsp4HI GCNGC 2 cut(s) 310, 601
FspBI CTAG 2 cut(s) 102, 446
GlaI GCGC 1 cut(s) 640
GluI GCNGC 2 cut(s) 310, 601
GsuI CTGGAG 3 cut(s) 163, 169, 248
HaeII RGCGCY 1 cut(s) 642
HapII CCGG 2 cut(s) 8, 50
HhaI GCGC 1 cut(s) 641
Hin6I GCGC 1 cut(s) 639
HinP1I GCGC 1 cut(s) 639
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 3 cut(s) 173, 578, 632
HpaII CCGG 2 cut(s) 8, 50
Hpy166II GTNNAC 2 cut(s) 252, 260
Hpy188I TCNGA 5 cut(s) 93, 520, 544, 577, 583
Hpy188III TCNNGA 3 cut(s) 205, 257, 341
Hpy8I GTNNAC 2 cut(s) 252, 260
HpyAV CCTTC 4 cut(s) 187, 338, 383, 554
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 2 cut(s) 276, 367
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 455
HpyF3I CTNAG 2 cut(s) 317, 417
HpySE526I ACGT 1 cut(s) 65
HspAI GCGC 1 cut(s) 639
KroI GCCGGC 2 cut(s) 7, 49
KroNI GCCGGC 2 cut(s) 9, 51
Kzo9I GATC 2 cut(s) 27, 337
LmnI GCTCC 1 cut(s) 188
Lsp1109I GCAGC 1 cut(s) 587
LweI GCATC 2 cut(s) 285, 580
MaeI CTAG 2 cut(s) 102, 446
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 61
MalI GATC 2 cut(s) 29, 339
MboI GATC 2 cut(s) 27, 337
MboII GAAGA 5 cut(s) 31, 85, 93, 106, 609
MfeI CAATTG 1 cut(s) 491
MflI RGATCY 1 cut(s) 337
MluCI AATT 4 cut(s) 114, 441, 470, 491
MlyI GAGTC 3 cut(s) 182, 587, 626
MmeI TCCRAC 1 cut(s) 606
MroNI GCCGGC 2 cut(s) 7, 49
MspA1I CMGCKG 1 cut(s) 600
MspI CCGG 2 cut(s) 8, 50
MunI CAATTG 1 cut(s) 491
MvnI CGCG 2 cut(s) 206, 312
MwoI GCNNNNNNNGC 2 cut(s) 55, 455
NaeI GCCGGC 2 cut(s) 9, 51
NdeII GATC 2 cut(s) 27, 337
NgoMIV GCCGGC 2 cut(s) 7, 49
NheI GCTAGC 1 cut(s) 101
NlaIV GGNNCC 1 cut(s) 568
NmuCI GTSAC 1 cut(s) 61
NruI TCGCGA 1 cut(s) 206
NspV TTCGAA 1 cut(s) 71
PdiI GCCGGC 2 cut(s) 9, 51
PkrI GCNGC 2 cut(s) 311, 602
PleI GAGTC 3 cut(s) 181, 586, 626
PpsI GAGTC 3 cut(s) 181, 586, 626
PspN4I GGNNCC 1 cut(s) 568
PsuI RGATCY 1 cut(s) 337
PvuII CAGCTG 1 cut(s) 600
RruI TCGCGA 1 cut(s) 206
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SatI GCNGC 2 cut(s) 310, 601
Sau3AI GATC 2 cut(s) 27, 337
SchI GAGTC 3 cut(s) 182, 587, 626
SfaNI GCATC 2 cut(s) 285, 580
SfcI CTRYAG 1 cut(s) 621
SfuI TTCGAA 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 4 cut(s) 114, 441, 470, 491
SsiI CCGC 3 cut(s) 299, 310, 499
SspMI CTAG 2 cut(s) 102, 446
TaiI ACGT 1 cut(s) 68
TaqI TCGA 2 cut(s) 30, 71
TasI AATT 4 cut(s) 114, 441, 470, 491
TauI GCSGC 1 cut(s) 312
TscAI CASTG 2 cut(s) 442, 592
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 600
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 4 cut(s) 17, 260, 341, 438
TspGWI ACGGA 3 cut(s) 239, 559, 660
TspRI CASTG 2 cut(s) 442, 592
XagI CCTNNNNNAGG 1 cut(s) 558
XapI RAATTY 1 cut(s) 441
XspI CTAG 2 cut(s) 102, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.