Rw4G029320
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000389
Physical Location & Seq
Reverse (-)
56008437 .. 56017770
9334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G029320.1

Sequence Viewer

Length: 651 bp
ATGATGAAGCCGACGAGCAAGAAGATAAAGATCGAGAAGATTGACAACTTGCCGGCGAGGCAGGTGACGTATTCGAAGAGGAGAAGAGGTCTTTTGAAGAAAGCTGGAGAGCTTTCAGTTCTATGTGATTGTGAGTTTTCTGTCATCATCTTTTCTGCTACTGGCAAGCTCTGTGAGTCCTCCAGCTCCAGTACGAAGGATGTCATTGCGAGGTATGAATCGCACATTGAAAATGTGGGAAAGTTGGACCGGCCATCTCTTGAGCTCGAGCATGACTGCGTCAGGTTGAGTAAGGAACTTGCGAACAAGAGCCGCAACATAAGGCAGTTGAATGGAGAGGATCTAGAAGGGCTGAACATAGATGAGTTGCAGAGATTGGAGAAAGACATTGAAGGATGTCTTAACCGTGTGAATCAAACTAAGGAAGAAAAGTTTAGCAGTGAAGTTCTGGTACTTGAGGCAAAGGGAGCTGAGTTGATGGAAGCGACTAACCAATTAAGGCAGGATTCAGATATCTCGACTGCTGAAGAAGGTTGGTTATCGGAGTCTGCCACAAATACCAGCAGCTGCCTTTCCACTGATTCTTCCCTAGATGATCACTCTGGCACCGACACTTTATCTCTCAAACTTGGGCTTCCTTACGGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

216

Amino Acids

23.94

Weight (kDa)

5.2

Isoelectric Point (pI)

49.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 13 - 58 3.2e-19 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 89 - 169 4.8e-14 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 52
Acc36I ACCTGC 1 cut(s) 52
AccB1I GGYRCC 1 cut(s) 605
AciI CCGC 1 cut(s) 313
AclWI GGATC 1 cut(s) 348
AcoI YGGCCR 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 546
AfaI GTAC 2 cut(s) 193, 453
AfiI CCNNNNNNNGG 1 cut(s) 644
AgsI TTSAA 4 cut(s) 97, 230, 331, 392
AluBI AGCT 7 cut(s) 104, 112, 169, 186, 265, 470, 567
AluI AGCT 7 cut(s) 104, 112, 169, 186, 265, 470, 567
Alw21I GWGCWC 1 cut(s) 267
AlwI GGATC 1 cut(s) 348
AlwNI CAGNNNCTG 1 cut(s) 567
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 564, 567
AspS9I GGNCC 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 76
AsuII TTCGAA 1 cut(s) 74
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 1 cut(s) 247
BanI GGYRCC 1 cut(s) 605
BanII GRGCYC 1 cut(s) 267
BarI GAAGNNNNNNTAC 2 cut(s) 435, 467
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 554, 576
BccI CCATC 2 cut(s) 262, 472
BclI TGATCA 1 cut(s) 595
BfaI CTAG 2 cut(s) 344, 590
BfuAI ACCTGC 1 cut(s) 52
BglI GCCNNNNNGGC 1 cut(s) 58
BisI GCNGC 3 cut(s) 313, 565, 568
BlsI GCNGC 3 cut(s) 314, 566, 569
Bme18I GGWCC 1 cut(s) 247
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 607
BpmI CTGGAG 3 cut(s) 126, 166, 172
Bpu14I TTCGAA 1 cut(s) 74
BpuEI CTTGAG 2 cut(s) 281, 476
BsaBI GATNNNNATC 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 73, 103
Bsc4I CCNNNNNNNGG 1 cut(s) 644
Bse118I RCCGGY 2 cut(s) 52, 249
Bse1I ACTGG 2 cut(s) 166, 189
Bse3DI GCAATG 1 cut(s) 204
Bse8I GATNNNNATC 1 cut(s) 29
BseGI GGATG 2 cut(s) 205, 401
BseJI GATNNNNATC 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 644
BseMI GCAATG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 2 cut(s) 166, 189
BseRI GAGGAG 1 cut(s) 94
BseXI GCAGC 2 cut(s) 554, 576
BshFI GGCC 1 cut(s) 253
BshNI GGYRCC 1 cut(s) 605
BsiHKAI GWGCWC 1 cut(s) 267
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 2 cut(s) 53, 250
BslI CCNNNNNNNGG 1 cut(s) 644
BsnI GGCC 1 cut(s) 253
BsoBI CYCGRG 1 cut(s) 266
Bsp119I TTCGAA 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 3 cut(s) 30, 340, 595
BspACI CCGC 1 cut(s) 313
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 1 cut(s) 463
BspLI GGNNCC 1 cut(s) 607
BspMI ACCTGC 1 cut(s) 52
BspPI GGATC 1 cut(s) 348
BspT104I TTCGAA 1 cut(s) 74
BspT107I GGYRCC 1 cut(s) 605
BsrDI GCAATG 1 cut(s) 204
BsrFI RCCGGY 2 cut(s) 52, 249
BsrI ACTGG 2 cut(s) 166, 189
BssAI RCCGGY 2 cut(s) 52, 249
BssMI GATC 3 cut(s) 30, 340, 595
Bst4CI ACNGT 2 cut(s) 407, 644
Bst6I CTCTTC 2 cut(s) 71, 79
BstBI TTCGAA 1 cut(s) 74
BstC8I GCNNGC 2 cut(s) 54, 167
BstDEI CTNAG 2 cut(s) 420, 471
BstF5I GGATG 2 cut(s) 205, 401
BstKTI GATC 3 cut(s) 33, 343, 598
BstMBI GATC 3 cut(s) 30, 340, 595
BstMWI GCNNNNNNNGC 2 cut(s) 58, 467
BstV1I GCAGC 2 cut(s) 554, 576
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuRI GGCC 1 cut(s) 253
BtsCI GGATG 2 cut(s) 205, 401
BtsI GCAGTG 1 cut(s) 445
BtsIMutI CAGTG 2 cut(s) 445, 576
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 2 cut(s) 54, 167
CaiI CAGNNNCTG 1 cut(s) 567
Cfr10I RCCGGY 2 cut(s) 52, 249
Cfr13I GGNCC 1 cut(s) 247
CseI GACGC 1 cut(s) 268
Csp6I GTAC 2 cut(s) 192, 452
CviAII CATG 1 cut(s) 272
CviQI GTAC 2 cut(s) 192, 452
DdeI CTNAG 2 cut(s) 420, 471
DpnI GATC 3 cut(s) 32, 342, 597
DpnII GATC 3 cut(s) 30, 340, 595
EaeI YGGCCR 1 cut(s) 251
Eam1104I CTCTTC 2 cut(s) 71, 79
EarI CTCTTC 2 cut(s) 71, 79
Ecl136II GAGCTC 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 267
Eco32I GATATC 1 cut(s) 514
Eco47I GGWCC 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 546
Eco88I CYCGRG 1 cut(s) 266
EcoICRI GAGCTC 1 cut(s) 265
EcoRV GATATC 1 cut(s) 514
EcoT38I GRGCYC 1 cut(s) 267
FaeI CATG 1 cut(s) 275
FaiI YATR 5 cut(s) 124, 216, 273, 320, 359
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FatI CATG 1 cut(s) 271
FbaI TGATCA 1 cut(s) 595
Fnu4HI GCNGC 3 cut(s) 313, 565, 568
FokI GGATG 2 cut(s) 212, 408
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 3 cut(s) 313, 565, 568
FspBI CTAG 2 cut(s) 344, 590
GluI GCNGC 3 cut(s) 313, 565, 568
GsuI CTGGAG 3 cut(s) 126, 166, 172
HaeIII GGCC 1 cut(s) 253
HapII CCGG 2 cut(s) 53, 250
HgaI GACGC 1 cut(s) 268
Hin1II CATG 1 cut(s) 275
HinfI GANTC 6 cut(s) 176, 218, 412, 506, 545, 581
HpaII CCGG 2 cut(s) 53, 250
HphI GGTGA 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 511, 544
Hpy188III TCNNGA 4 cut(s) 34, 260, 344, 517
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 4 cut(s) 190, 341, 386, 524
HpyCH4III ACNGT 2 cut(s) 407, 644
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 1 cut(s) 370
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 467
HpyF3I CTNAG 2 cut(s) 420, 471
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 1 cut(s) 275
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 3 cut(s) 30, 340, 595
LmnI GCTCC 2 cut(s) 191, 467
Lsp1109I GCAGC 2 cut(s) 554, 576
MaeI CTAG 2 cut(s) 344, 590
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 64
MalI GATC 3 cut(s) 32, 342, 597
MboI GATC 3 cut(s) 30, 340, 595
MboII GAAGA 8 cut(s) 34, 49, 88, 96, 109, 437, 539, 576
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 1 cut(s) 494
MlyI GAGTC 2 cut(s) 185, 554
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 7 cut(s) 51, 72, 80, 190, 204, 331, 451
MroNI GCCGGC 1 cut(s) 52
MseI TTAA 2 cut(s) 402, 497
MspA1I CMGCKG 1 cut(s) 567
MspI CCGG 2 cut(s) 53, 250
MwoI GCNNNNNNNGC 2 cut(s) 58, 467
NaeI GCCGGC 1 cut(s) 54
NdeII GATC 3 cut(s) 30, 340, 595
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 1 cut(s) 607
NmuCI GTSAC 1 cut(s) 64
NspV TTCGAA 1 cut(s) 74
PaeR7I CTCGAG 1 cut(s) 266
PaqCI CACCTGC 1 cut(s) 52
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 4 cut(s) 218, 412, 506, 581
PflFI GACNNNGTC 1 cut(s) 278
PkrI GCNGC 3 cut(s) 314, 566, 569
PleI GAGTC 2 cut(s) 184, 553
PpsI GAGTC 2 cut(s) 184, 553
Psp124BI GAGCTC 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 607
PspPI GGNCC 1 cut(s) 247
PspXI VCTCGAGB 1 cut(s) 266
PstNI CAGNNNCTG 1 cut(s) 567
PsuI RGATCY 1 cut(s) 340
PsyI GACNNNGTC 1 cut(s) 278
PvuII CAGCTG 1 cut(s) 567
RsaI GTAC 2 cut(s) 193, 453
RsaNI GTAC 2 cut(s) 192, 452
SacI GAGCTC 1 cut(s) 267
SaqAI TTAA 2 cut(s) 402, 497
SatI GCNGC 3 cut(s) 313, 565, 568
Sau3AI GATC 3 cut(s) 30, 340, 595
Sau96I GGNCC 1 cut(s) 247
SchI GAGTC 2 cut(s) 185, 554
SduI GDGCHC 1 cut(s) 267
Sfr274I CTCGAG 1 cut(s) 266
SfuI TTCGAA 1 cut(s) 74
SinI GGWCC 1 cut(s) 247
SlaI CTCGAG 1 cut(s) 266
SmlI CTYRAG 3 cut(s) 260, 266, 455
SmoI CTYRAG 3 cut(s) 260, 266, 455
Sse9I AATT 1 cut(s) 494
SsiI CCGC 1 cut(s) 313
SspMI CTAG 2 cut(s) 344, 590
SstI GAGCTC 1 cut(s) 267
TaaI ACNGT 2 cut(s) 407, 644
TaiI ACGT 1 cut(s) 71
TaqI TCGA 4 cut(s) 33, 74, 267, 518
TasI AATT 1 cut(s) 494
TauI GCSGC 1 cut(s) 315
TfiI GAWTC 4 cut(s) 218, 412, 506, 581
Tru1I TTAA 2 cut(s) 402, 497
Tru9I TTAA 2 cut(s) 402, 497
TscAI CASTG 2 cut(s) 445, 583
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 564, 567
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 2 cut(s) 20, 231
TspRI CASTG 2 cut(s) 445, 583
Tth111I GACNNNGTC 1 cut(s) 278
VpaK11BI GGWCC 1 cut(s) 247
XbaI TCTAGA 1 cut(s) 343
XhoI CTCGAG 1 cut(s) 266
XspI CTAG 2 cut(s) 344, 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.