MADS-box protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| K-box | PF01486 | 1 - 60 | 6.8e-13 | K-box region |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 21 |
| AfaI | GTAC | 1 cut(s) | 222 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 371 |
| AgsI | TTSAA | 2 cut(s) | 43, 131 |
| AluBI | AGCT | 3 cut(s) | 143, 215, 294 |
| AluI | AGCT | 3 cut(s) | 143, 215, 294 |
| AlwI | GGATC | 1 cut(s) | 21 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 297 |
| ApeKI | GCWGC | 3 cut(s) | 291, 294, 297 |
| AspLEI | GCGC | 1 cut(s) | 302 |
| AsuHPI | GGTGA | 1 cut(s) | 20 |
| AsuNHI | GCTAGC | 1 cut(s) | 287 |
| BbvI | GCAGC | 3 cut(s) | 281, 284, 303 |
| BccI | CCATC | 1 cut(s) | 175 |
| BceAI | ACGGC | 1 cut(s) | 63 |
| BfaI | CTAG | 1 cut(s) | 288 |
| BisI | GCNGC | 3 cut(s) | 292, 295, 298 |
| BlsI | GCNGC | 3 cut(s) | 293, 296, 299 |
| BmtI | GCTAGC | 1 cut(s) | 291 |
| BsaJI | CCNNGG | 3 cut(s) | 93, 228, 370 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 371 |
| Bse1I | ACTGG | 1 cut(s) | 310 |
| BseDI | CCNNGG | 3 cut(s) | 93, 228, 370 |
| BseGI | GGATG | 2 cut(s) | 40, 192 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 371 |
| BseMII | CTCAG | 1 cut(s) | 135 |
| BseNI | ACTGG | 1 cut(s) | 310 |
| BseXI | GCAGC | 3 cut(s) | 281, 284, 303 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 371 |
| Bsp143I | GATC | 1 cut(s) | 13 |
| BspCNI | CTCAG | 1 cut(s) | 136 |
| BspOI | GCTAGC | 1 cut(s) | 291 |
| BspPI | GGATC | 1 cut(s) | 21 |
| BsrI | ACTGG | 1 cut(s) | 310 |
| BssECI | CCNNGG | 3 cut(s) | 93, 228, 370 |
| BssMI | GATC | 1 cut(s) | 13 |
| BssT1I | CCWWGG | 2 cut(s) | 93, 228 |
| Bst4CI | ACNGT | 1 cut(s) | 371 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 297 |
| BstC8I | GCNNGC | 1 cut(s) | 289 |
| BstDEI | CTNAG | 2 cut(s) | 74, 144 |
| BstDSI | CCRYGG | 1 cut(s) | 370 |
| BstF5I | GGATG | 2 cut(s) | 40, 192 |
| BstHHI | GCGC | 1 cut(s) | 302 |
| BstKTI | GATC | 1 cut(s) | 16 |
| BstMBI | GATC | 1 cut(s) | 13 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 131, 140, 284, 297 |
| BstV1I | GCAGC | 3 cut(s) | 281, 284, 303 |
| BstX2I | RGATCY | 1 cut(s) | 13 |
| BstYI | RGATCY | 1 cut(s) | 13 |
| BtgI | CCRYGG | 1 cut(s) | 370 |
| BtsCI | GGATG | 2 cut(s) | 40, 192 |
| Cac8I | GCNNGC | 1 cut(s) | 289 |
| CaiI | CAGNNNCTG | 1 cut(s) | 297 |
| CfoI | GCGC | 1 cut(s) | 302 |
| Csp6I | GTAC | 1 cut(s) | 221 |
| CviAII | CATG | 1 cut(s) | 61 |
| CviJI | RGCY | 7 cut(s) | 25, 78, 143, 215, 294, 361, 375 |
| CviKI_1 | RGCY | 7 cut(s) | 25, 78, 143, 215, 294, 361, 375 |
| CviQI | GTAC | 1 cut(s) | 221 |
| DdeI | CTNAG | 2 cut(s) | 74, 144 |
| DpnI | GATC | 1 cut(s) | 15 |
| DpnII | GATC | 1 cut(s) | 13 |
| Eco130I | CCWWGG | 2 cut(s) | 93, 228 |
| Eco32I | GATATC | 2 cut(s) | 192, 241 |
| EcoRV | GATATC | 2 cut(s) | 192, 241 |
| EcoT14I | CCWWGG | 2 cut(s) | 93, 228 |
| ErhI | CCWWGG | 2 cut(s) | 93, 228 |
| FaeI | CATG | 1 cut(s) | 64 |
| FaiI | YATR | 4 cut(s) | 32, 62, 110, 122 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 57, 89 |
| FatI | CATG | 1 cut(s) | 60 |
| Fnu4HI | GCNGC | 3 cut(s) | 292, 295, 298 |
| FokI | GGATG | 2 cut(s) | 47, 199 |
| Fsp4HI | GCNGC | 3 cut(s) | 292, 295, 298 |
| FspBI | CTAG | 1 cut(s) | 288 |
| GlaI | GCGC | 1 cut(s) | 301 |
| GluI | GCNGC | 3 cut(s) | 292, 295, 298 |
| HhaI | GCGC | 1 cut(s) | 302 |
| Hin1II | CATG | 1 cut(s) | 64 |
| Hin6I | GCGC | 1 cut(s) | 300 |
| HinP1I | GCGC | 1 cut(s) | 300 |
| HinfI | GANTC | 3 cut(s) | 233, 272, 326 |
| HphI | GGTGA | 1 cut(s) | 20 |
| Hpy166II | GTNNAC | 1 cut(s) | 221 |
| Hpy188I | TCNGA | 2 cut(s) | 238, 271 |
| Hpy188III | TCNNGA | 1 cut(s) | 17 |
| Hpy8I | GTNNAC | 1 cut(s) | 221 |
| HpyAV | CCTTC | 3 cut(s) | 14, 59, 251 |
| HpyCH4III | ACNGT | 1 cut(s) | 371 |
| HpyCH4V | TGCA | 1 cut(s) | 200 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 131, 140, 284, 297 |
| HpyF3I | CTNAG | 2 cut(s) | 74, 144 |
| Hsp92II | CATG | 1 cut(s) | 64 |
| HspAI | GCGC | 1 cut(s) | 300 |
| Kzo9I | GATC | 1 cut(s) | 13 |
| LmnI | GCTCC | 2 cut(s) | 52, 140 |
| LpnPI | CCDG | 5 cut(s) | 2, 41, 201, 291, 330 |
| Lsp1109I | GCAGC | 3 cut(s) | 281, 284, 303 |
| MaeI | CTAG | 1 cut(s) | 288 |
| MalI | GATC | 1 cut(s) | 15 |
| MboI | GATC | 1 cut(s) | 13 |
| MboII | GAAGA | 4 cut(s) | 55, 110, 266, 303 |
| MflI | RGATCY | 1 cut(s) | 13 |
| MluCI | AATT | 1 cut(s) | 47 |
| MlyI | GAGTC | 2 cut(s) | 242, 320 |
| MmeI | TCCRAC | 2 cut(s) | 132, 216 |
| MnlI | CCTC | 2 cut(s) | 4, 62 |
| MseI | TTAA | 1 cut(s) | 170 |
| MspA1I | CMGCKG | 1 cut(s) | 294 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 131, 140, 284, 297 |
| NdeII | GATC | 1 cut(s) | 13 |
| NheI | GCTAGC | 1 cut(s) | 287 |
| NlaIII | CATG | 1 cut(s) | 64 |
| PfeI | GAWTC | 1 cut(s) | 272 |
| PkrI | GCNGC | 3 cut(s) | 293, 296, 299 |
| PleI | GAGTC | 2 cut(s) | 241, 320 |
| PpsI | GAGTC | 2 cut(s) | 241, 320 |
| PstNI | CAGNNNCTG | 1 cut(s) | 297 |
| PsuI | RGATCY | 1 cut(s) | 13 |
| PvuII | CAGCTG | 1 cut(s) | 294 |
| RsaI | GTAC | 1 cut(s) | 222 |
| RsaNI | GTAC | 1 cut(s) | 221 |
| SaqAI | TTAA | 1 cut(s) | 170 |
| SatI | GCNGC | 3 cut(s) | 292, 295, 298 |
| Sau3AI | GATC | 1 cut(s) | 13 |
| SchI | GAGTC | 2 cut(s) | 242, 320 |
| SetI | ASST | 5 cut(s) | 145, 217, 262, 296, 344 |
| Sse9I | AATT | 1 cut(s) | 47 |
| SspMI | CTAG | 1 cut(s) | 288 |
| StyI | CCWWGG | 2 cut(s) | 93, 228 |
| TaaI | ACNGT | 1 cut(s) | 371 |
| TasI | AATT | 1 cut(s) | 47 |
| TatI | WGTACW | 1 cut(s) | 220 |
| TfiI | GAWTC | 1 cut(s) | 272 |
| Tru1I | TTAA | 1 cut(s) | 170 |
| Tru9I | TTAA | 1 cut(s) | 170 |
| TseI | GCWGC | 3 cut(s) | 291, 294, 297 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| XspI | CTAG | 1 cut(s) | 288 |