Prupe.1G531700_v2.0.a1
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000389
Physical Location & Seq
Forward (+)
43473533 .. 43480648
7116 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G531700.1

Sequence Viewer

Length: 717 bp
ATGATGAGGGAGAAGATCAAGATCAAGAAGATTGACTACCTGCCAGCAAGGCAGGTGACCTTCTCAAAGAGAAGAAGAGGGCTCTTCAAGAAAGCTGCAGAGCTATCTGTTCTGTGTGAATCTGAGGTGGCTGTCATCATCTTCTCTGCTACTGACAAGCTCTTTGATTATTCAAGCTCAAGTACCGAGGATGTTATTGAAAGGTACAAAGCGCACACAAATGATCTCGAAAAATCGAACAAACAGTTTCTTGAGCTGCAACTGGAGAATGAAAACCACATCAAACTGAGTAAGGAACTCGAGGAGAAGAGCCGCCGGCTGAGGCAGATGAAAGGTGAGGATCTTCAAGGGCTGAATATGGATGAGCTGCTGAAGTTAGAACAACTGGTGGAAGCAAGCCTTGGCCGTGTGATAGAAACTAAGGAAGAGCTGATTATGAGTGAGATTATGGCACTGGAGAAAAAGGGAGCTGAGCTGGTAGAAGCCAACAACCAGTTAAGGCAGAAGATGGCGATGTTATCCGGAGGAAATACTGGACCTGCGTTTGTGGAGCCGGAGACGTTGATTACTAATGTTGGAGGTGGAGGAGAAGAAGACGGCATGTCATCTGAATCTGCCATAATTGCCACCTCCACCAGCTGCAACAGTGCTCACAGTCTCTCTCTTGAAGATGACTGCTCCGATGTCACTTTATCTCTCAAACTGGGGCTTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

239

Amino Acids

26.53

Weight (kDa)

5.1

Isoelectric Point (pI)

52.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
Acc36I ACCTGC 3 cut(s) 43, 48, 547
AccIII TCCGGA 1 cut(s) 521
AciI CCGC 1 cut(s) 313
AclWI GGATC 1 cut(s) 348
AcoI YGGCCR 1 cut(s) 403
AcuI CTGAAG 1 cut(s) 392
AfaI GTAC 2 cut(s) 184, 206
AgsI TTSAA 5 cut(s) 88, 174, 200, 347, 668
AhdI GACNNNNNGTC 1 cut(s) 601
AjuI GAANNNNNNNTTGG 2 cut(s) 384, 416
Alw21I GWGCWC 1 cut(s) 652
Alw26I GTCTC 2 cut(s) 551, 662
AlwI GGATC 1 cut(s) 348
Ama87I CYCGRG 1 cut(s) 299
Aor13HI TCCGGA 1 cut(s) 521
AoxI GGCC 1 cut(s) 403
ApeKI GCWGC 4 cut(s) 95, 256, 367, 639
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 1 cut(s) 536
AsuHPI GGTGA 2 cut(s) 67, 347
AvaI CYCGRG 1 cut(s) 299
AvaII GGWCC 1 cut(s) 536
BanII GRGCYC 1 cut(s) 84
BarI GAAGNNNNNNTAC 2 cut(s) 20, 52
BbsI GAAGAC 1 cut(s) 600
Bbv12I GWGCWC 1 cut(s) 652
BbvCI CCTCAGC 1 cut(s) 320
BbvI GCAGC 4 cut(s) 82, 243, 354, 626
BccI CCATC 1 cut(s) 502
BceAI ACGGC 2 cut(s) 390, 613
BcoDI GTCTC 2 cut(s) 551, 662
BfaI CTAG 1 cut(s) 715
BfmI CTRYAG 1 cut(s) 96
BfuAI ACCTGC 3 cut(s) 43, 48, 547
BglI GCCNNNNNGGC 1 cut(s) 49
BisI GCNGC 5 cut(s) 96, 257, 313, 368, 640
BlpI GCTNAGC 1 cut(s) 471
BlsI GCNGC 5 cut(s) 97, 258, 314, 369, 641
Bme18I GGWCC 1 cut(s) 536
BmeRI GACNNNNNGTC 1 cut(s) 601
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 536
BmiI GGNNCC 1 cut(s) 552
BmrI ACTGGG 1 cut(s) 713
BmuI ACTGGG 1 cut(s) 713
BpiI GAAGAC 1 cut(s) 600
BpmI CTGGAG 2 cut(s) 284, 476
Bpu10I CCTNAGC 1 cut(s) 320
Bpu1102I GCTNAGC 1 cut(s) 471
BpuEI CTTGAG 2 cut(s) 163, 272
BsaBI GATNNNNATC 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 186, 400
BsaWI WCCGGW 1 cut(s) 521
Bse118I RCCGGY 1 cut(s) 315
Bse1I ACTGG 6 cut(s) 267, 390, 459, 493, 538, 708
Bse8I GATNNNNATC 1 cut(s) 20
BseAI TCCGGA 1 cut(s) 521
BseDI CCNNGG 2 cut(s) 186, 400
BseGI GGATG 2 cut(s) 196, 367
BseJI GATNNNNATC 1 cut(s) 20
BseMII CTCAG 4 cut(s) 114, 278, 311, 462
BseNI ACTGG 6 cut(s) 267, 390, 459, 493, 538, 708
BseRI GAGGAG 2 cut(s) 317, 600
BseXI GCAGC 4 cut(s) 82, 243, 354, 626
BshFI GGCC 1 cut(s) 405
BsiHKAI GWGCWC 1 cut(s) 652
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 3 cut(s) 316, 522, 554
BsmAI GTCTC 2 cut(s) 551, 662
BsmBI CGTCTC 1 cut(s) 551
BsnI GGCC 1 cut(s) 405
BsoBI CYCGRG 1 cut(s) 299
Bsp1286I GDGCHC 2 cut(s) 84, 652
Bsp13I TCCGGA 1 cut(s) 521
Bsp143I GATC 4 cut(s) 15, 21, 223, 340
Bsp1720I GCTNAGC 1 cut(s) 471
BspACI CCGC 1 cut(s) 313
BspANI GGCC 1 cut(s) 405
BspCNI CTCAG 4 cut(s) 115, 279, 312, 463
BspEI TCCGGA 1 cut(s) 521
BspLI GGNNCC 1 cut(s) 552
BspMAI CTGCAG 1 cut(s) 100
BspMI ACCTGC 3 cut(s) 43, 48, 547
BspPI GGATC 1 cut(s) 348
BspQI GCTCTTC 3 cut(s) 89, 302, 420
BsrFI RCCGGY 1 cut(s) 315
BsrI ACTGG 6 cut(s) 267, 390, 459, 493, 538, 708
BssAI RCCGGY 1 cut(s) 315
BssECI CCNNGG 2 cut(s) 186, 400
BssMI GATC 4 cut(s) 15, 21, 223, 340
BssT1I CCWWGG 1 cut(s) 400
Bst4CI ACNGT 3 cut(s) 246, 647, 656
Bst6I CTCTTC 4 cut(s) 70, 89, 302, 420
BstC8I GCNNGC 3 cut(s) 45, 317, 397
BstDEI CTNAG 5 cut(s) 123, 287, 320, 420, 471
BstEII GGTNACC 1 cut(s) 55
BstF5I GGATG 2 cut(s) 196, 367
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 4 cut(s) 18, 24, 226, 343
BstMAI GTCTC 2 cut(s) 551, 662
BstMBI GATC 4 cut(s) 15, 21, 223, 340
BstMWI GCNNNNNNNGC 2 cut(s) 49, 623
BstNSI RCATGY 1 cut(s) 604
BstPI GGTNACC 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 4 cut(s) 82, 243, 354, 626
BstV2I GAAGAC 1 cut(s) 600
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuRI GGCC 1 cut(s) 405
BtgZI GCGATG 1 cut(s) 527
BtsCI GGATG 2 cut(s) 196, 367
BtsIMutI CAGTG 2 cut(s) 452, 652
BveI ACCTGC 3 cut(s) 43, 48, 547
Cac8I GCNNGC 3 cut(s) 45, 317, 397
CfoI GCGC 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 315
Cfr13I GGNCC 1 cut(s) 536
Csp6I GTAC 2 cut(s) 183, 205
CviAII CATG 1 cut(s) 601
CviQI GTAC 2 cut(s) 183, 205
DdeI CTNAG 5 cut(s) 123, 287, 320, 420, 471
DpnI GATC 4 cut(s) 17, 23, 225, 342
DpnII GATC 4 cut(s) 15, 21, 223, 340
DriI GACNNNNNGTC 1 cut(s) 601
EaeI YGGCCR 1 cut(s) 403
Eam1104I CTCTTC 4 cut(s) 70, 89, 302, 420
Eam1105I GACNNNNNGTC 1 cut(s) 601
EarI CTCTTC 4 cut(s) 70, 89, 302, 420
Eco130I CCWWGG 1 cut(s) 400
Eco24I GRGCYC 1 cut(s) 84
Eco47I GGWCC 1 cut(s) 536
Eco57I CTGAAG 1 cut(s) 392
Eco88I CYCGRG 1 cut(s) 299
Eco91I GGTNACC 1 cut(s) 55
EcoO65I GGTNACC 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 400
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 400
Esp3I CGTCTC 1 cut(s) 551
FaeI CATG 1 cut(s) 604
FaiI YATR 5 cut(s) 359, 437, 449, 602, 620
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FatI CATG 1 cut(s) 600
Fnu4HI GCNGC 5 cut(s) 96, 257, 313, 368, 640
FokI GGATG 2 cut(s) 203, 374
FriOI GRGCYC 1 cut(s) 84
Fsp4HI GCNGC 5 cut(s) 96, 257, 313, 368, 640
FspBI CTAG 1 cut(s) 715
GlaI GCGC 1 cut(s) 213
GluI GCNGC 5 cut(s) 96, 257, 313, 368, 640
GsuI CTGGAG 2 cut(s) 284, 476
HaeIII GGCC 1 cut(s) 405
HapII CCGG 3 cut(s) 316, 522, 554
HhaI GCGC 1 cut(s) 214
Hin1II CATG 1 cut(s) 604
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HinfI GANTC 2 cut(s) 119, 611
HpaII CCGG 3 cut(s) 316, 522, 554
HphI GGTGA 2 cut(s) 67, 347
Hpy188I TCNGA 3 cut(s) 124, 610, 682
Hpy188III TCNNGA 7 cut(s) 19, 25, 88, 227, 251, 522, 665
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 3 cut(s) 246, 647, 656
HpyCH4IV ACGT 1 cut(s) 560
HpyCH4V TGCA 3 cut(s) 98, 259, 642
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 623
HpyF3I CTNAG 5 cut(s) 123, 287, 320, 420, 471
HpySE526I ACGT 1 cut(s) 560
Hsp92II CATG 1 cut(s) 604
HspAI GCGC 1 cut(s) 212
Kpn2I TCCGGA 1 cut(s) 521
KroI GCCGGC 1 cut(s) 315
KroNI GCCGGC 1 cut(s) 317
Kzo9I GATC 4 cut(s) 15, 21, 223, 340
LguI GCTCTTC 3 cut(s) 89, 302, 420
LmnI GCTCC 3 cut(s) 467, 550, 683
Lsp1109I GCAGC 4 cut(s) 82, 243, 354, 626
MaeI CTAG 1 cut(s) 715
MaeII ACGT 1 cut(s) 560
MaeIII GTNAC 2 cut(s) 55, 685
MalI GATC 4 cut(s) 17, 23, 225, 342
MboI GATC 4 cut(s) 15, 21, 223, 340
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 2 cut(s) 84, 652
MluCI AATT 1 cut(s) 621
MmeI TCCRAC 1 cut(s) 556
MroI TCCGGA 1 cut(s) 521
MroNI GCCGGC 1 cut(s) 315
MseI TTAA 1 cut(s) 497
MslI CAYNNNNRTG 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 639
MspI CCGG 3 cut(s) 316, 522, 554
MwoI GCNNNNNNNGC 2 cut(s) 49, 623
NaeI GCCGGC 1 cut(s) 317
NdeII GATC 4 cut(s) 15, 21, 223, 340
NgoMIV GCCGGC 1 cut(s) 315
NlaIII CATG 1 cut(s) 604
NlaIV GGNNCC 1 cut(s) 552
NmuCI GTSAC 2 cut(s) 55, 685
NspI RCATGY 1 cut(s) 604
PaeR7I CTCGAG 1 cut(s) 299
PaqCI CACCTGC 1 cut(s) 43
PciSI GCTCTTC 3 cut(s) 89, 302, 420
PdiI GCCGGC 1 cut(s) 317
PfeI GAWTC 2 cut(s) 119, 611
PkrI GCNGC 5 cut(s) 97, 258, 314, 369, 641
PspEI GGTNACC 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 552
PspPI GGNCC 1 cut(s) 536
PspXI VCTCGAGB 1 cut(s) 299
PstI CTGCAG 1 cut(s) 100
PsuI RGATCY 1 cut(s) 340
PvuII CAGCTG 1 cut(s) 639
RsaI GTAC 2 cut(s) 184, 206
RsaNI GTAC 2 cut(s) 183, 205
RseI CAYNNNNRTG 1 cut(s) 219
SapI GCTCTTC 3 cut(s) 89, 302, 420
SaqAI TTAA 1 cut(s) 497
SatI GCNGC 5 cut(s) 96, 257, 313, 368, 640
Sau3AI GATC 4 cut(s) 15, 21, 223, 340
Sau96I GGNCC 1 cut(s) 536
SduI GDGCHC 2 cut(s) 84, 652
SfcI CTRYAG 1 cut(s) 96
Sfr274I CTCGAG 1 cut(s) 299
SinI GGWCC 1 cut(s) 536
SlaI CTCGAG 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 219
SmlI CTYRAG 3 cut(s) 178, 251, 299
SmoI CTYRAG 3 cut(s) 178, 251, 299
Sse9I AATT 1 cut(s) 621
SsiI CCGC 1 cut(s) 313
SspMI CTAG 1 cut(s) 715
StyI CCWWGG 1 cut(s) 400
TaaI ACNGT 3 cut(s) 246, 647, 656
TaiI ACGT 1 cut(s) 563
TaqI TCGA 3 cut(s) 228, 236, 300
TasI AATT 1 cut(s) 621
TauI GCSGC 1 cut(s) 315
TfiI GAWTC 2 cut(s) 119, 611
Tru1I TTAA 1 cut(s) 497
Tru9I TTAA 1 cut(s) 497
TscAI CASTG 2 cut(s) 459, 652
TseFI GTSAC 2 cut(s) 55, 685
TseI GCWGC 4 cut(s) 95, 256, 367, 639
Tsp45I GTSAC 2 cut(s) 55, 685
TspDTI ATGAA 2 cut(s) 285, 344
TspRI CASTG 2 cut(s) 459, 652
VpaK11BI GGWCC 1 cut(s) 536
XceI RCATGY 1 cut(s) 604
XhoI CTCGAG 1 cut(s) 299
XspI CTAG 1 cut(s) 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.