RchiOBHm_Chr7g0205051
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000389
Physical Location & Seq
Forward (+)
22698455 .. 22707497
9043 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18350

Sequence Viewer

Length: 408 bp
ATGTATAACCGTGTCTGCATTATTGGCCGTCCGATTGCGGCCACGCCCGTTTCTTTTTTGGGGAAACAATTCTTTCCTTTTTTAGGCGTATACTATTTCACCTCCATTTCCGCTTGCTGTCAACTCTGGCGAGACCCAAAGCTTCAGTTTCTGCACCACGAAGCAATAATTGAGCAGCTAGCTGCTATGAATAAGATAAAGATTGAGAAGATAGAGAACTTGCCGGCGAGGCAGGTGACGTTTTCAAAGAGGAGACAAGGGCTTTTCAAGAAAGCCGAAGCGTTATCAGTTCTCTGCGACGCTGAGGTTGCTGTCGTTGTCTTTTCTTCTACTGGCAAGCTCTATGAGTCCTCCAGCTCCAGGAGTTCATTATGTGCACAATTGGAAGAAGATATTAGTGCAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

135

Amino Acids

15.15

Weight (kDa)

8.87

Isoelectric Point (pI)

61.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 70 - 116 4.4e-25 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 223
Acc36I ACCTGC 1 cut(s) 223
AccI GTMKAC 1 cut(s) 90
AciI CCGC 2 cut(s) 38, 111
AcoI YGGCCR 2 cut(s) 25, 39
AcuI CTGAAG 1 cut(s) 128
AfiI CCNNNNNNNGG 2 cut(s) 83, 360
AgsI TTSAA 2 cut(s) 246, 268
AjnI CCWGG 1 cut(s) 359
AluBI AGCT 5 cut(s) 142, 178, 182, 340, 357
AluI AGCT 5 cut(s) 142, 178, 182, 340, 357
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 2 cut(s) 126, 247
Alw44I GTGCAC 1 cut(s) 375
AlwNI CAGNNNCTG 1 cut(s) 151
AoxI GGCC 2 cut(s) 25, 39
ApaLI GTGCAC 1 cut(s) 375
ApeKI GCWGC 2 cut(s) 175, 182
Asp700I GAANNNNTTC 1 cut(s) 68
AsuHPI GGTGA 2 cut(s) 91, 247
AsuNHI GCTAGC 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 379
Bbv12I GWGCWC 1 cut(s) 379
BbvCI CCTCAGC 1 cut(s) 303
BbvI GCAGC 2 cut(s) 169, 187
BceAI ACGGC 1 cut(s) 12
BciT130I CCWGG 1 cut(s) 361
BcoDI GTCTC 2 cut(s) 126, 247
BfaI CTAG 1 cut(s) 179
BfuAI ACCTGC 1 cut(s) 223
BglI GCCNNNNNGGC 1 cut(s) 229
BisI GCNGC 3 cut(s) 39, 176, 183
BlsI GCNGC 3 cut(s) 40, 177, 184
Bme1390I CCNGG 1 cut(s) 361
BmrFI CCNGG 1 cut(s) 361
BmtI GCTAGC 1 cut(s) 182
BpmI CTGGAG 2 cut(s) 337, 343
Bpu10I CCTNAGC 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 126
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 360
Bse118I RCCGGY 1 cut(s) 223
Bse1I ACTGG 1 cut(s) 337
BseBI CCWGG 1 cut(s) 361
BseLI CCNNNNNNNGG 2 cut(s) 83, 360
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 1 cut(s) 265
BseSI GKGCMC 1 cut(s) 379
BseXI GCAGC 2 cut(s) 169, 187
BsgI GTGCAG 1 cut(s) 137
BshFI GGCC 2 cut(s) 27, 41
BsiHKAI GWGCWC 1 cut(s) 379
BsiSI CCGG 1 cut(s) 224
BslI CCNNNNNNNGG 2 cut(s) 83, 360
BsmAI GTCTC 2 cut(s) 126, 247
BsnI GGCC 2 cut(s) 27, 41
Bso31I GGTCTC 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 379
BspACI CCGC 2 cut(s) 38, 111
BspANI GGCC 2 cut(s) 27, 41
BspCNI CTCAG 1 cut(s) 295
BspMI ACCTGC 1 cut(s) 223
BspOI GCTAGC 1 cut(s) 182
BspTNI GGTCTC 1 cut(s) 126
BsrFI RCCGGY 1 cut(s) 223
BsrI ACTGG 1 cut(s) 337
BssAI RCCGGY 1 cut(s) 223
BssNAI GTATAC 1 cut(s) 91
Bst1107I GTATAC 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 1 cut(s) 11
BstC8I GCNNGC 4 cut(s) 115, 180, 225, 338
BstDEI CTNAG 1 cut(s) 303
BstENI CCTNNNNNAGG 1 cut(s) 81
BstMAI GTCTC 2 cut(s) 126, 247
BstMWI GCNNNNNNNGC 3 cut(s) 24, 229, 308
BstNI CCWGG 1 cut(s) 361
BstSCI CCNGG 1 cut(s) 359
BstSLI GKGCMC 1 cut(s) 379
BstV1I GCAGC 2 cut(s) 169, 187
BstZ17I GTATAC 1 cut(s) 91
BsuRI GGCC 2 cut(s) 27, 41
BveI ACCTGC 1 cut(s) 223
Cac8I GCNNGC 4 cut(s) 115, 180, 225, 338
CaiI CAGNNNCTG 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 223
CseI GACGC 1 cut(s) 308
CviJI RGCY 9 cut(s) 27, 41, 142, 178, 182, 262, 275, 340, 357
CviKI_1 RGCY 9 cut(s) 27, 41, 142, 178, 182, 262, 275, 340, 357
DdeI CTNAG 1 cut(s) 303
EaeI YGGCCR 2 cut(s) 25, 39
Eco31I GGTCTC 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 128
EcoNI CCTNNNNNAGG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 359
FaiI YATR 5 cut(s) 6, 91, 188, 345, 373
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 3 cut(s) 39, 176, 183
Fsp4HI GCNGC 3 cut(s) 39, 176, 183
FspBI CTAG 1 cut(s) 179
GluI GCNGC 3 cut(s) 39, 176, 183
GsuI CTGGAG 2 cut(s) 337, 343
HaeIII GGCC 2 cut(s) 27, 41
HapII CCGG 1 cut(s) 224
HgaI GACGC 1 cut(s) 308
HincII GTYRAC 1 cut(s) 122
HindII GTYRAC 1 cut(s) 122
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 1 cut(s) 347
HpaII CCGG 1 cut(s) 224
HphI GGTGA 2 cut(s) 91, 247
Hpy166II GTNNAC 3 cut(s) 91, 122, 377
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 1 cut(s) 268
Hpy8I GTNNAC 3 cut(s) 91, 122, 377
Hpy99I CGWCG 1 cut(s) 302
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 4 cut(s) 18, 154, 377, 401
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 229, 308
HpyF3I CTNAG 1 cut(s) 303
HpySE526I ACGT 1 cut(s) 239
KroI GCCGGC 1 cut(s) 223
KroNI GCCGGC 1 cut(s) 225
LmnI GCTCC 1 cut(s) 362
LpnPI CCDG 7 cut(s) 112, 218, 237, 318, 346, 367, 373
Lsp1109I GCAGC 2 cut(s) 169, 187
MaeI CTAG 1 cut(s) 179
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 235
MboII GAAGA 4 cut(s) 220, 318, 398, 401
MfeI CAATTG 1 cut(s) 380
MhlI GDGCHC 1 cut(s) 379
MluCI AATT 4 cut(s) 68, 168, 380, 402
MlyI GAGTC 1 cut(s) 356
MnlI CCTC 5 cut(s) 112, 222, 243, 298, 361
MroNI GCCGGC 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 68
MseI TTAA 1 cut(s) 406
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 361
MunI CAATTG 1 cut(s) 380
MvaI CCWGG 1 cut(s) 361
MwoI GCNNNNNNNGC 3 cut(s) 24, 229, 308
NaeI GCCGGC 1 cut(s) 225
NgoMIV GCCGGC 1 cut(s) 223
NheI GCTAGC 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 235
PaqCI CACCTGC 1 cut(s) 223
PdiI GCCGGC 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 68
PfoI TCCNGGA 1 cut(s) 359
PkrI GCNGC 3 cut(s) 40, 177, 184
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 359
PspGI CCWGG 1 cut(s) 359
PstNI CAGNNNCTG 1 cut(s) 151
SaqAI TTAA 1 cut(s) 406
SatI GCNGC 3 cut(s) 39, 176, 183
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 1 cut(s) 361
SduI GDGCHC 1 cut(s) 379
SetI ASST 9 cut(s) 104, 144, 180, 184, 237, 242, 309, 342, 359
Sse9I AATT 4 cut(s) 68, 168, 380, 402
SsiI CCGC 2 cut(s) 38, 111
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 359
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 1 cut(s) 242
TasI AATT 4 cut(s) 68, 168, 380, 402
TauI GCSGC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 406
Tru9I TTAA 1 cut(s) 406
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 2 cut(s) 175, 182
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 203, 357
VneI GTGCAC 1 cut(s) 375
XagI CCTNNNNNAGG 1 cut(s) 81
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 68
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.