MADS-box protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| K-box | PF01486 | 36 - 119 | 4.1e-15 | K-box region |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 103 |
| Acc36I | ACCTGC | 1 cut(s) | 103 |
| AclWI | GGATC | 2 cut(s) | 151, 195 |
| AcsI | RAATTY | 1 cut(s) | 449 |
| AcuI | CTGAAG | 1 cut(s) | 84 |
| AfaI | GTAC | 4 cut(s) | 28, 50, 258, 481 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 17 |
| AgsI | TTSAA | 5 cut(s) | 136, 239, 263, 305, 492 |
| AhlI | ACTAGT | 1 cut(s) | 482 |
| AluBI | AGCT | 7 cut(s) | 55, 103, 109, 166, 199, 266, 389 |
| AluI | AGCT | 7 cut(s) | 55, 103, 109, 166, 199, 266, 389 |
| Alw21I | GWGCWC | 1 cut(s) | 105 |
| AlwI | GGATC | 2 cut(s) | 151, 195 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 295 |
| Ama87I | CYCGRG | 1 cut(s) | 161 |
| ApeKI | GCWGC | 2 cut(s) | 55, 88 |
| ApoI | RAATTY | 1 cut(s) | 449 |
| AspS9I | GGNCC | 1 cut(s) | 82 |
| AvaI | CYCGRG | 1 cut(s) | 161 |
| AvaII | GGWCC | 1 cut(s) | 82 |
| BanII | GRGCYC | 1 cut(s) | 105 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 472, 504 |
| Bbv12I | GWGCWC | 1 cut(s) | 105 |
| BbvI | GCAGC | 2 cut(s) | 42, 100 |
| BccI | CCATC | 2 cut(s) | 169, 371 |
| BceAI | ACGGC | 1 cut(s) | 237 |
| BcuI | ACTAGT | 1 cut(s) | 482 |
| BfaI | CTAG | 3 cut(s) | 191, 390, 483 |
| BfmI | CTRYAG | 1 cut(s) | 204 |
| BfuAI | ACCTGC | 1 cut(s) | 103 |
| BglII | AGATCT | 1 cut(s) | 414 |
| BisI | GCNGC | 2 cut(s) | 56, 89 |
| BlpI | GCTNAGC | 1 cut(s) | 99 |
| BlsI | GCNGC | 2 cut(s) | 57, 90 |
| Bme18I | GGWCC | 1 cut(s) | 82 |
| BmeT110I | CYCGRG | 1 cut(s) | 161 |
| BmgT120I | GGNCC | 1 cut(s) | 82 |
| BmiI | GGNNCC | 2 cut(s) | 83, 316 |
| BmsI | GCATC | 2 cut(s) | 351, 452 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 497, 529 |
| BpmI | CTGGAG | 2 cut(s) | 89, 131 |
| Bpu10I | CCTNAGC | 2 cut(s) | 167, 267 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 99 |
| BpuEI | CTTGAG | 1 cut(s) | 524 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 17 |
| Bse118I | RCCGGY | 1 cut(s) | 467 |
| Bse3DI | GCAATG | 1 cut(s) | 39 |
| BseGI | GGATG | 4 cut(s) | 40, 277, 366, 514 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 17 |
| BseMI | GCAATG | 1 cut(s) | 39 |
| BseMII | CTCAG | 2 cut(s) | 90, 262 |
| BseRI | GAGGAG | 1 cut(s) | 505 |
| BseXI | GCAGC | 2 cut(s) | 42, 100 |
| BsgI | GTGCAG | 1 cut(s) | 41 |
| BsiHKAI | GWGCWC | 1 cut(s) | 105 |
| BsiHKCI | CYCGRG | 1 cut(s) | 161 |
| BsiSI | CCGG | 1 cut(s) | 468 |
| BslFI | GGGAC | 1 cut(s) | 95 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 17 |
| BsmFI | GGGAC | 1 cut(s) | 95 |
| BsoBI | CYCGRG | 1 cut(s) | 161 |
| Bsp1286I | GDGCHC | 1 cut(s) | 105 |
| Bsp143I | GATC | 3 cut(s) | 156, 187, 414 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 99 |
| BspCNI | CTCAG | 2 cut(s) | 91, 261 |
| BspLI | GGNNCC | 2 cut(s) | 83, 316 |
| BspMI | ACCTGC | 1 cut(s) | 103 |
| BspPI | GGATC | 2 cut(s) | 151, 195 |
| BspQI | GCTCTTC | 1 cut(s) | 189 |
| BsrDI | GCAATG | 1 cut(s) | 39 |
| BsrFI | RCCGGY | 1 cut(s) | 467 |
| BssAI | RCCGGY | 1 cut(s) | 467 |
| BssMI | GATC | 3 cut(s) | 156, 187, 414 |
| Bst4CI | ACNGT | 1 cut(s) | 479 |
| Bst6I | CTCTTC | 2 cut(s) | 69, 189 |
| BstDEI | CTNAG | 4 cut(s) | 99, 167, 248, 267 |
| BstF5I | GGATG | 4 cut(s) | 40, 277, 366, 514 |
| BstKTI | GATC | 3 cut(s) | 159, 190, 417 |
| BstMBI | GATC | 3 cut(s) | 156, 187, 414 |
| BstSFI | CTRYAG | 1 cut(s) | 204 |
| BstV1I | GCAGC | 2 cut(s) | 42, 100 |
| BstX2I | RGATCY | 3 cut(s) | 156, 187, 414 |
| BstYI | RGATCY | 3 cut(s) | 156, 187, 414 |
| BtsCI | GGATG | 4 cut(s) | 40, 277, 366, 514 |
| BtsIMutI | CAGTG | 1 cut(s) | 60 |
| BveI | ACCTGC | 1 cut(s) | 103 |
| CaiI | CAGNNNCTG | 1 cut(s) | 295 |
| Cfr10I | RCCGGY | 1 cut(s) | 467 |
| Cfr13I | GGNCC | 1 cut(s) | 82 |
| Csp6I | GTAC | 4 cut(s) | 27, 49, 257, 480 |
| CviAII | CATG | 1 cut(s) | 127 |
| CviQI | GTAC | 4 cut(s) | 27, 49, 257, 480 |
| DdeI | CTNAG | 4 cut(s) | 99, 167, 248, 267 |
| DpnI | GATC | 3 cut(s) | 158, 189, 416 |
| DpnII | GATC | 3 cut(s) | 156, 187, 414 |
| Eam1104I | CTCTTC | 2 cut(s) | 69, 189 |
| EarI | CTCTTC | 2 cut(s) | 69, 189 |
| Ecl136II | GAGCTC | 1 cut(s) | 103 |
| Eco24I | GRGCYC | 1 cut(s) | 105 |
| Eco47I | GGWCC | 1 cut(s) | 82 |
| Eco53kI | GAGCTC | 1 cut(s) | 103 |
| Eco57I | CTGAAG | 1 cut(s) | 84 |
| Eco88I | CYCGRG | 1 cut(s) | 161 |
| EcoICRI | GAGCTC | 1 cut(s) | 103 |
| EcoT38I | GRGCYC | 1 cut(s) | 105 |
| FaeI | CATG | 1 cut(s) | 130 |
| FaiI | YATR | 5 cut(s) | 15, 128, 206, 284, 440 |
| FaqI | GGGAC | 1 cut(s) | 95 |
| FatI | CATG | 1 cut(s) | 126 |
| Fnu4HI | GCNGC | 2 cut(s) | 56, 89 |
| FokI | GGATG | 4 cut(s) | 47, 284, 373, 521 |
| FriOI | GRGCYC | 1 cut(s) | 105 |
| Fsp4HI | GCNGC | 2 cut(s) | 56, 89 |
| FspBI | CTAG | 3 cut(s) | 191, 390, 483 |
| GluI | GCNGC | 2 cut(s) | 56, 89 |
| GsuI | CTGGAG | 2 cut(s) | 89, 131 |
| HapII | CCGG | 1 cut(s) | 468 |
| Hin1II | CATG | 1 cut(s) | 130 |
| HincII | GTYRAC | 1 cut(s) | 324 |
| HindII | GTYRAC | 1 cut(s) | 324 |
| HinfI | GANTC | 4 cut(s) | 246, 286, 292, 512 |
| HpaII | CCGG | 1 cut(s) | 468 |
| Hpy166II | GTNNAC | 2 cut(s) | 257, 324 |
| Hpy188I | TCNGA | 4 cut(s) | 291, 412, 448, 520 |
| Hpy188III | TCNNGA | 1 cut(s) | 191 |
| Hpy8I | GTNNAC | 2 cut(s) | 257, 324 |
| HpyAV | CCTTC | 3 cut(s) | 25, 233, 428 |
| HpyCH4III | ACNGT | 1 cut(s) | 479 |
| HpyCH4V | TGCA | 4 cut(s) | 44, 58, 126, 217 |
| HpyF3I | CTNAG | 4 cut(s) | 99, 167, 248, 267 |
| Hsp92II | CATG | 1 cut(s) | 130 |
| Kzo9I | GATC | 3 cut(s) | 156, 187, 414 |
| LguI | GCTCTTC | 1 cut(s) | 189 |
| LmnI | GCTCC | 2 cut(s) | 108, 314 |
| LpnPI | CCDG | 7 cut(s) | 95, 98, 108, 119, 170, 281, 481 |
| Lsp1109I | GCAGC | 2 cut(s) | 42, 100 |
| LweI | GCATC | 2 cut(s) | 351, 452 |
| MaeI | CTAG | 3 cut(s) | 191, 390, 483 |
| MalI | GATC | 3 cut(s) | 158, 189, 416 |
| MboI | GATC | 3 cut(s) | 156, 187, 414 |
| MboII | GAAGA | 7 cut(s) | 77, 86, 206, 440, 443, 480, 489 |
| MflI | RGATCY | 3 cut(s) | 156, 187, 414 |
| MhlI | GDGCHC | 1 cut(s) | 105 |
| MluCI | AATT | 2 cut(s) | 341, 449 |
| MlyI | GAGTC | 3 cut(s) | 240, 295, 506 |
| MmeI | TCCRAC | 1 cut(s) | 390 |
| MseI | TTAA | 2 cut(s) | 344, 537 |
| MspA1I | CMGCKG | 1 cut(s) | 109 |
| MspI | CCGG | 1 cut(s) | 468 |
| NdeII | GATC | 3 cut(s) | 156, 187, 414 |
| NlaIII | CATG | 1 cut(s) | 130 |
| NlaIV | GGNNCC | 2 cut(s) | 83, 316 |
| NmeAIII | GCCGAG | 1 cut(s) | 343 |
| PaeR7I | CTCGAG | 1 cut(s) | 161 |
| PaqCI | CACCTGC | 1 cut(s) | 103 |
| PciSI | GCTCTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 1 cut(s) | 292 |
| PkrI | GCNGC | 2 cut(s) | 57, 90 |
| PleI | GAGTC | 3 cut(s) | 240, 294, 506 |
| PpsI | GAGTC | 3 cut(s) | 240, 294, 506 |
| Psp124BI | GAGCTC | 1 cut(s) | 105 |
| PspN4I | GGNNCC | 2 cut(s) | 83, 316 |
| PspPI | GGNCC | 1 cut(s) | 82 |
| PspXI | VCTCGAGB | 1 cut(s) | 161 |
| PstNI | CAGNNNCTG | 1 cut(s) | 295 |
| PsuI | RGATCY | 3 cut(s) | 156, 187, 414 |
| PvuII | CAGCTG | 1 cut(s) | 109 |
| RsaI | GTAC | 4 cut(s) | 28, 50, 258, 481 |
| RsaNI | GTAC | 4 cut(s) | 27, 49, 257, 480 |
| SacI | GAGCTC | 1 cut(s) | 105 |
| SapI | GCTCTTC | 1 cut(s) | 189 |
| SaqAI | TTAA | 2 cut(s) | 344, 537 |
| SatI | GCNGC | 2 cut(s) | 56, 89 |
| Sau3AI | GATC | 3 cut(s) | 156, 187, 414 |
| Sau96I | GGNCC | 1 cut(s) | 82 |
| SchI | GAGTC | 3 cut(s) | 240, 295, 506 |
| SduI | GDGCHC | 1 cut(s) | 105 |
| SfaNI | GCATC | 2 cut(s) | 351, 452 |
| SfcI | CTRYAG | 1 cut(s) | 204 |
| Sfr274I | CTCGAG | 1 cut(s) | 161 |
| SinI | GGWCC | 1 cut(s) | 82 |
| SlaI | CTCGAG | 1 cut(s) | 161 |
| SmlI | CTYRAG | 2 cut(s) | 161, 503 |
| SmoI | CTYRAG | 2 cut(s) | 161, 503 |
| SpeI | ACTAGT | 1 cut(s) | 482 |
| Sse9I | AATT | 2 cut(s) | 341, 449 |
| SspMI | CTAG | 3 cut(s) | 191, 390, 483 |
| SstI | GAGCTC | 1 cut(s) | 105 |
| TaaI | ACNGT | 1 cut(s) | 479 |
| TaqI | TCGA | 1 cut(s) | 162 |
| TasI | AATT | 2 cut(s) | 341, 449 |
| TatI | WGTACW | 1 cut(s) | 256 |
| TfiI | GAWTC | 1 cut(s) | 292 |
| Tru1I | TTAA | 2 cut(s) | 344, 537 |
| Tru9I | TTAA | 2 cut(s) | 344, 537 |
| TscAI | CASTG | 1 cut(s) | 67 |
| TseI | GCWGC | 2 cut(s) | 55, 88 |
| TspDTI | ATGAA | 2 cut(s) | 288, 441 |
| TspRI | CASTG | 1 cut(s) | 67 |
| VpaK11BI | GGWCC | 1 cut(s) | 82 |
| XapI | RAATTY | 1 cut(s) | 449 |
| XbaI | TCTAGA | 1 cut(s) | 190 |
| XhoI | CTCGAG | 1 cut(s) | 161 |
| XspI | CTAG | 3 cut(s) | 191, 390, 483 |