Rorug04G0280500
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000389
Physical Location & Seq
Forward (+)
45365072 .. 45367484
2413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0280500.1

Sequence Viewer

Length: 519 bp
ATGTTGGATGATCAGGACTCGTTCACGCGGTGCGTTAAGTCGAATCCTCCGGAGCCGTGGAATTGGAATATCTATTTGTTCCCCTTGTGGTGTTTCGGAGTGGTGATTCGATACTTTGTTCTATTTCCGGCAAGGGTACTGGTCTTGACTATTGGATGGATAATTTTCCTTTCGGCATTCATTCCTGTGCACTTCCTACTCAAAGGCCATGAAAAATTGAGAAAAAATTTAGAGAGATGGTTGGTGGAGTTAATGTGTAGCTTCTTTGTTGCATCTTGGACTGGGGTTGTGAAGTACCATGGACCAAAGCCTAGTATGATGCCAAAGCAGGTTTTTGTGGCCAATCATACTTCTATGATTGATTTCATCATCCCGGAACAAATGACGCATTTGCTGCAGTCCTTCACAATGCATCTGCTACAGCTTATGACATCATGGGCTGTTGTTTGTGATGTGTGGTATTTGGAGCCCGAAAATATGAAGCCTGGGGAGACTGCCATTGAATTTGCAGAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

172

Amino Acids

20.26

Weight (kDa)

6.58

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 319
AccII CGCG 1 cut(s) 28
AccIII TCCGGA 1 cut(s) 49
AciI CCGC 1 cut(s) 28
AcoI YGGCCR 1 cut(s) 339
AcsI RAATTY 2 cut(s) 226, 503
AdeI CACNNNGTG 1 cut(s) 30
AfaI GTAC 2 cut(s) 138, 296
AgsI TTSAA 1 cut(s) 503
AjnI CCWGG 1 cut(s) 484
AluBI AGCT 2 cut(s) 261, 424
AluI AGCT 2 cut(s) 261, 424
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 485
Alw44I GTGCAC 1 cut(s) 188
Aor13HI TCCGGA 1 cut(s) 49
AoxI GGCC 2 cut(s) 205, 339
ApaLI GTGCAC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 394
ApoI RAATTY 2 cut(s) 226, 503
AspS9I GGNCC 1 cut(s) 302
AsuC2I CCSGG 1 cut(s) 374
AsuHPI GGTGA 1 cut(s) 115
AvaII GGWCC 1 cut(s) 302
BaeGI GKGCMC 1 cut(s) 192
BalI TGGCCA 1 cut(s) 341
BanII GRGCYC 1 cut(s) 471
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 381
BccI CCATC 2 cut(s) 150, 231
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 486
BclI TGATCA 1 cut(s) 10
BcnI CCSGG 1 cut(s) 374
BcoDI GTCTC 1 cut(s) 485
BfaI CTAG 1 cut(s) 312
BfmI CTRYAG 2 cut(s) 395, 419
BfuAI ACCTGC 1 cut(s) 319
BisI GCNGC 1 cut(s) 395
BlsI GCNGC 1 cut(s) 396
Bme1390I CCNGG 2 cut(s) 374, 486
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 2 cut(s) 54, 468
BmrFI CCNGG 2 cut(s) 374, 486
BmrI ACTGGG 1 cut(s) 291
BmsI GCATC 3 cut(s) 281, 309, 421
BmuI ACTGGG 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 374
BsaJI CCNNGG 3 cut(s) 56, 298, 485
BsaWI WCCGGW 1 cut(s) 49
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bse1I ACTGG 2 cut(s) 144, 286
BseAI TCCGGA 1 cut(s) 49
BseBI CCWGG 1 cut(s) 486
BseDI CCNNGG 3 cut(s) 56, 298, 485
BseGI GGATG 3 cut(s) 13, 161, 369
BseNI ACTGG 2 cut(s) 144, 286
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 1 cut(s) 381
Bsh1236I CGCG 1 cut(s) 28
BshFI GGCC 2 cut(s) 207, 341
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 3 cut(s) 50, 128, 374
BsmAI GTCTC 1 cut(s) 485
BsmI GAATGC 1 cut(s) 176
BsnI GGCC 2 cut(s) 207, 341
Bsp1286I GDGCHC 2 cut(s) 192, 471
Bsp13I TCCGGA 1 cut(s) 49
Bsp143I GATC 1 cut(s) 10
Bsp19I CCATGG 1 cut(s) 298
BspACI CCGC 1 cut(s) 28
BspANI GGCC 2 cut(s) 207, 341
BspEI TCCGGA 1 cut(s) 49
BspFNI CGCG 1 cut(s) 28
BspLI GGNNCC 2 cut(s) 54, 468
BspMAI CTGCAG 1 cut(s) 399
BspMI ACCTGC 1 cut(s) 319
BsrI ACTGG 2 cut(s) 144, 286
BssECI CCNNGG 3 cut(s) 56, 298, 485
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 486
BstAPI GCANNNNNTGC 1 cut(s) 394
BstDSI CCRYGG 2 cut(s) 56, 298
BstF5I GGATG 3 cut(s) 13, 161, 369
BstFNI CGCG 1 cut(s) 28
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 394
BstNI CCWGG 1 cut(s) 486
BstSCI CCNGG 2 cut(s) 372, 484
BstSFI CTRYAG 2 cut(s) 395, 419
BstSLI GKGCMC 1 cut(s) 192
BstUI CGCG 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 381
BsuRI GGCC 2 cut(s) 207, 341
BtgI CCRYGG 2 cut(s) 56, 298
BtsCI GGATG 3 cut(s) 13, 161, 369
BveI ACCTGC 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 302
CseI GACGC 1 cut(s) 394
Csp6I GTAC 2 cut(s) 137, 295
CviAII CATG 3 cut(s) 209, 299, 435
CviJI RGCY 9 cut(s) 55, 207, 261, 310, 341, 424, 440, 469, 484
CviKI_1 RGCY 9 cut(s) 55, 207, 261, 310, 341, 424, 440, 469, 484
CviQI GTAC 2 cut(s) 137, 295
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
DraIII CACNNNGTG 1 cut(s) 30
EaeI YGGCCR 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 298
Eco24I GRGCYC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 484
EcoT14I CCWWGG 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 414
EcoT38I GRGCYC 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 3 cut(s) 212, 302, 438
FaiI YATR 8 cut(s) 210, 300, 317, 348, 356, 428, 436, 479
FatI CATG 3 cut(s) 208, 298, 434
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 1 cut(s) 395
FokI GGATG 3 cut(s) 20, 168, 356
FriOI GRGCYC 1 cut(s) 471
Fsp4HI GCNGC 1 cut(s) 395
FspBI CTAG 1 cut(s) 312
GluI GCNGC 1 cut(s) 395
HaeIII GGCC 2 cut(s) 207, 341
HapII CCGG 3 cut(s) 50, 128, 374
HgaI GACGC 1 cut(s) 394
Hin1II CATG 3 cut(s) 212, 302, 438
HinfI GANTC 3 cut(s) 17, 43, 106
HpaII CCGG 3 cut(s) 50, 128, 374
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 2 cut(s) 24, 190
Hpy188I TCNGA 1 cut(s) 98
Hpy188III TCNNGA 3 cut(s) 14, 50, 145
Hpy8I GTNNAC 2 cut(s) 24, 190
HpyAV CCTTC 1 cut(s) 412
HpyCH4V TGCA 5 cut(s) 190, 272, 397, 412, 509
HpyF10VI GCNNNNNNNGC 1 cut(s) 394
Hsp92II CATG 3 cut(s) 212, 302, 438
Kpn2I TCCGGA 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 2 cut(s) 52, 466
LpnPI CCDG 9 cut(s) 63, 125, 141, 198, 267, 314, 387, 471, 498
Lsp1109I GCAGC 1 cut(s) 381
LweI GCATC 3 cut(s) 281, 309, 421
MaeI CTAG 1 cut(s) 312
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MhlI GDGCHC 2 cut(s) 192, 471
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 5 cut(s) 61, 162, 215, 226, 503
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 1 cut(s) 11
MnlI CCTC 2 cut(s) 57, 507
Mox20I TGGCCA 1 cut(s) 341
Mph1103I ATGCAT 1 cut(s) 414
MroI TCCGGA 1 cut(s) 49
MscI TGGCCA 1 cut(s) 341
MseI TTAA 2 cut(s) 36, 251
MslI CAYNNNNRTG 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 341
MspI CCGG 3 cut(s) 50, 128, 374
MspR9I CCNGG 2 cut(s) 374, 486
Mva1269I GAATGC 1 cut(s) 176
MvaI CCWGG 1 cut(s) 486
MvnI CGCG 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 394
NciI CCSGG 1 cut(s) 374
NcoI CCATGG 1 cut(s) 298
NdeII GATC 1 cut(s) 10
NlaIII CATG 3 cut(s) 212, 302, 438
NlaIV GGNNCC 2 cut(s) 54, 468
NsiI ATGCAT 1 cut(s) 414
PctI GAATGC 1 cut(s) 176
PfeI GAWTC 2 cut(s) 43, 106
PfoI TCCNGGA 1 cut(s) 372
PkrI GCNGC 1 cut(s) 396
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 484
PspGI CCWGG 1 cut(s) 484
PspN4I GGNNCC 2 cut(s) 54, 468
PspPI GGNCC 1 cut(s) 302
PstI CTGCAG 1 cut(s) 399
RsaI GTAC 2 cut(s) 138, 296
RsaNI GTAC 2 cut(s) 137, 295
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 2 cut(s) 36, 251
SatI GCNGC 1 cut(s) 395
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 302
SchI GAGTC 1 cut(s) 11
ScrFI CCNGG 2 cut(s) 374, 486
SduI GDGCHC 2 cut(s) 192, 471
SetI ASST 4 cut(s) 263, 333, 426, 518
SfaNI GCATC 3 cut(s) 281, 309, 421
SfcI CTRYAG 2 cut(s) 395, 419
SinI GGWCC 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 185
Sse9I AATT 5 cut(s) 61, 162, 215, 226, 503
SsiI CCGC 1 cut(s) 28
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 2 cut(s) 372, 484
StyI CCWWGG 1 cut(s) 298
TaqI TCGA 2 cut(s) 41, 109
TasI AATT 5 cut(s) 61, 162, 215, 226, 503
TfiI GAWTC 2 cut(s) 43, 106
Tru1I TTAA 2 cut(s) 36, 251
Tru9I TTAA 2 cut(s) 36, 251
TseI GCWGC 1 cut(s) 394
TspDTI ATGAA 4 cut(s) 169, 225, 355, 494
VneI GTGCAC 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 302
XapI RAATTY 2 cut(s) 226, 503
XspI CTAG 1 cut(s) 312
Zsp2I ATGCAT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.