MADS-box protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| K-box | PF01486 | 58 - 137 | 1e-13 | K-box region |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 32 |
| AciI | CCGC | 3 cut(s) | 42, 203, 226 |
| AclWI | GGATC | 2 cut(s) | 205, 249 |
| AcuI | CTGAAG | 1 cut(s) | 138 |
| AfaI | GTAC | 3 cut(s) | 82, 104, 535 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 12 |
| AgsI | TTSAA | 4 cut(s) | 190, 293, 317, 359 |
| AjnI | CCWGG | 1 cut(s) | 35 |
| AluBI | AGCT | 4 cut(s) | 157, 163, 220, 253 |
| AluI | AGCT | 4 cut(s) | 157, 163, 220, 253 |
| Alw21I | GWGCWC | 1 cut(s) | 159 |
| AlwI | GGATC | 2 cut(s) | 205, 249 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 349 |
| Ama87I | CYCGRG | 1 cut(s) | 215 |
| AoxI | GGCC | 2 cut(s) | 21, 39 |
| ApeKI | GCWGC | 3 cut(s) | 44, 142, 525 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 42, 74 |
| AseI | ATTAAT | 1 cut(s) | 171 |
| AspS9I | GGNCC | 2 cut(s) | 15, 39 |
| AvaI | CYCGRG | 1 cut(s) | 215 |
| AvaII | GGWCC | 1 cut(s) | 15 |
| BanI | GGYRCC | 1 cut(s) | 32 |
| BanII | GRGCYC | 1 cut(s) | 159 |
| Bbv12I | GWGCWC | 1 cut(s) | 159 |
| BbvI | GCAGC | 3 cut(s) | 31, 154, 512 |
| BccI | CCATC | 2 cut(s) | 14, 223 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 42, 76 |
| BciT130I | CCWGG | 1 cut(s) | 37 |
| BfaI | CTAG | 1 cut(s) | 245 |
| BfmI | CTRYAG | 1 cut(s) | 529 |
| BglII | AGATCT | 1 cut(s) | 468 |
| BisI | GCNGC | 4 cut(s) | 42, 45, 143, 526 |
| BlsI | GCNGC | 4 cut(s) | 43, 46, 144, 527 |
| BmcAI | AGTACT | 1 cut(s) | 535 |
| Bme1390I | CCNGG | 1 cut(s) | 37 |
| Bme18I | GGWCC | 1 cut(s) | 15 |
| BmeT110I | CYCGRG | 1 cut(s) | 215 |
| BmgT120I | GGNCC | 2 cut(s) | 15, 39 |
| BmiI | GGNNCC | 2 cut(s) | 34, 517 |
| BmrFI | CCNGG | 1 cut(s) | 37 |
| BmsI | GCATC | 2 cut(s) | 405, 506 |
| BpmI | CTGGAG | 2 cut(s) | 143, 185 |
| Bpu10I | CCTNAGC | 2 cut(s) | 153, 221 |
| BsaJI | CCNNGG | 3 cut(s) | 18, 28, 36 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 12 |
| Bse118I | RCCGGY | 1 cut(s) | 521 |
| Bse1I | ACTGG | 2 cut(s) | 448, 541 |
| Bse3DI | GCAATG | 1 cut(s) | 93 |
| BseBI | CCWGG | 1 cut(s) | 37 |
| BseDI | CCNNGG | 3 cut(s) | 18, 28, 36 |
| BseGI | GGATG | 4 cut(s) | 94, 186, 234, 420 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 12 |
| BseMI | GCAATG | 1 cut(s) | 93 |
| BseMII | CTCAG | 2 cut(s) | 144, 316 |
| BseNI | ACTGG | 2 cut(s) | 448, 541 |
| BseXI | GCAGC | 3 cut(s) | 31, 154, 512 |
| BshFI | GGCC | 2 cut(s) | 23, 41 |
| BshNI | GGYRCC | 1 cut(s) | 32 |
| BsiHKAI | GWGCWC | 1 cut(s) | 159 |
| BsiHKCI | CYCGRG | 1 cut(s) | 215 |
| BsiSI | CCGG | 1 cut(s) | 522 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 12 |
| BsnI | GGCC | 2 cut(s) | 23, 41 |
| BsoBI | CYCGRG | 1 cut(s) | 215 |
| Bsp1286I | GDGCHC | 1 cut(s) | 159 |
| Bsp143I | GATC | 3 cut(s) | 210, 241, 468 |
| BspACI | CCGC | 3 cut(s) | 42, 203, 226 |
| BspANI | GGCC | 2 cut(s) | 23, 41 |
| BspCNI | CTCAG | 2 cut(s) | 145, 315 |
| BspLI | GGNNCC | 2 cut(s) | 34, 517 |
| BspPI | GGATC | 2 cut(s) | 205, 249 |
| BspQI | GCTCTTC | 1 cut(s) | 243 |
| BspT107I | GGYRCC | 1 cut(s) | 32 |
| BsrDI | GCAATG | 1 cut(s) | 93 |
| BsrFI | RCCGGY | 1 cut(s) | 521 |
| BsrI | ACTGG | 2 cut(s) | 448, 541 |
| BssAI | RCCGGY | 1 cut(s) | 521 |
| BssECI | CCNNGG | 3 cut(s) | 18, 28, 36 |
| BssMI | GATC | 3 cut(s) | 210, 241, 468 |
| BssT1I | CCWWGG | 1 cut(s) | 18 |
| Bst2UI | CCWGG | 1 cut(s) | 37 |
| Bst4CI | ACNGT | 1 cut(s) | 533 |
| Bst6I | CTCTTC | 1 cut(s) | 243 |
| BstDEI | CTNAG | 3 cut(s) | 153, 221, 302 |
| BstEII | GGTNACC | 1 cut(s) | 539 |
| BstF5I | GGATG | 4 cut(s) | 94, 186, 234, 420 |
| BstKTI | GATC | 3 cut(s) | 213, 244, 471 |
| BstMBI | GATC | 3 cut(s) | 210, 241, 468 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 41 |
| BstNI | CCWGG | 1 cut(s) | 37 |
| BstPI | GGTNACC | 1 cut(s) | 539 |
| BstSCI | CCNGG | 1 cut(s) | 35 |
| BstSFI | CTRYAG | 1 cut(s) | 529 |
| BstV1I | GCAGC | 3 cut(s) | 31, 154, 512 |
| BstX2I | RGATCY | 3 cut(s) | 210, 241, 468 |
| BstYI | RGATCY | 3 cut(s) | 210, 241, 468 |
| BsuRI | GGCC | 2 cut(s) | 23, 41 |
| BtsCI | GGATG | 4 cut(s) | 94, 186, 234, 420 |
| BtsI | GCAGTG | 1 cut(s) | 313 |
| BtsIMutI | CAGTG | 2 cut(s) | 114, 313 |
| CaiI | CAGNNNCTG | 1 cut(s) | 349 |
| Cfr10I | RCCGGY | 1 cut(s) | 521 |
| Cfr13I | GGNCC | 2 cut(s) | 15, 39 |
| Csp6I | GTAC | 3 cut(s) | 81, 103, 534 |
| CviQI | GTAC | 3 cut(s) | 81, 103, 534 |
| DdeI | CTNAG | 3 cut(s) | 153, 221, 302 |
| DpnI | GATC | 3 cut(s) | 212, 243, 470 |
| DpnII | GATC | 3 cut(s) | 210, 241, 468 |
| Eam1104I | CTCTTC | 1 cut(s) | 243 |
| EarI | CTCTTC | 1 cut(s) | 243 |
| EciI | GGCGGA | 1 cut(s) | 241 |
| Ecl136II | GAGCTC | 1 cut(s) | 157 |
| Eco130I | CCWWGG | 1 cut(s) | 18 |
| Eco24I | GRGCYC | 1 cut(s) | 159 |
| Eco47I | GGWCC | 1 cut(s) | 15 |
| Eco53kI | GAGCTC | 1 cut(s) | 157 |
| Eco57I | CTGAAG | 1 cut(s) | 138 |
| Eco88I | CYCGRG | 1 cut(s) | 215 |
| Eco91I | GGTNACC | 1 cut(s) | 539 |
| EcoICRI | GAGCTC | 1 cut(s) | 157 |
| EcoO65I | GGTNACC | 1 cut(s) | 539 |
| EcoRII | CCWGG | 1 cut(s) | 35 |
| EcoT14I | CCWWGG | 1 cut(s) | 18 |
| EcoT38I | GRGCYC | 1 cut(s) | 159 |
| ErhI | CCWWGG | 1 cut(s) | 18 |
| FaiI | YATR | 3 cut(s) | 260, 338, 494 |
| Fnu4HI | GCNGC | 4 cut(s) | 42, 45, 143, 526 |
| FokI | GGATG | 4 cut(s) | 101, 193, 241, 427 |
| FriOI | GRGCYC | 1 cut(s) | 159 |
| Fsp4HI | GCNGC | 4 cut(s) | 42, 45, 143, 526 |
| FspBI | CTAG | 1 cut(s) | 245 |
| GluI | GCNGC | 4 cut(s) | 42, 45, 143, 526 |
| GsuI | CTGGAG | 2 cut(s) | 143, 185 |
| HaeIII | GGCC | 2 cut(s) | 23, 41 |
| HapII | CCGG | 1 cut(s) | 522 |
| HincII | GTYRAC | 1 cut(s) | 378 |
| HindII | GTYRAC | 1 cut(s) | 378 |
| HinfI | GANTC | 5 cut(s) | 300, 340, 346, 461, 503 |
| HpaII | CCGG | 1 cut(s) | 522 |
| Hpy166II | GTNNAC | 1 cut(s) | 378 |
| Hpy188I | TCNGA | 3 cut(s) | 345, 466, 502 |
| Hpy188III | TCNNGA | 2 cut(s) | 152, 245 |
| Hpy8I | GTNNAC | 1 cut(s) | 378 |
| Hpy99I | CGWCG | 1 cut(s) | 76 |
| HpyAV | CCTTC | 3 cut(s) | 79, 287, 316 |
| HpyCH4III | ACNGT | 1 cut(s) | 533 |
| HpyCH4V | TGCA | 4 cut(s) | 63, 98, 112, 271 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 41 |
| HpyF3I | CTNAG | 3 cut(s) | 153, 221, 302 |
| Kzo9I | GATC | 3 cut(s) | 210, 241, 468 |
| LguI | GCTCTTC | 1 cut(s) | 243 |
| LmnI | GCTCC | 1 cut(s) | 162 |
| Lsp1109I | GCAGC | 3 cut(s) | 31, 154, 512 |
| LweI | GCATC | 2 cut(s) | 405, 506 |
| MaeI | CTAG | 1 cut(s) | 245 |
| MaeIII | GTNAC | 2 cut(s) | 408, 539 |
| MalI | GATC | 3 cut(s) | 212, 243, 470 |
| MboI | GATC | 3 cut(s) | 210, 241, 468 |
| MboII | GAAGA | 4 cut(s) | 131, 260, 494, 497 |
| MflI | RGATCY | 3 cut(s) | 210, 241, 468 |
| MhlI | GDGCHC | 1 cut(s) | 159 |
| MluCI | AATT | 3 cut(s) | 107, 266, 395 |
| MlyI | GAGTC | 3 cut(s) | 294, 349, 470 |
| MmeI | TCCRAC | 1 cut(s) | 444 |
| MnlI | CCTC | 7 cut(s) | 23, 159, 177, 224, 226, 290, 399 |
| MseI | TTAA | 2 cut(s) | 171, 398 |
| MspA1I | CMGCKG | 2 cut(s) | 44, 163 |
| MspI | CCGG | 1 cut(s) | 522 |
| MspR9I | CCNGG | 1 cut(s) | 37 |
| MvaI | CCWGG | 1 cut(s) | 37 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 41 |
| NdeII | GATC | 3 cut(s) | 210, 241, 468 |
| NlaIV | GGNNCC | 2 cut(s) | 34, 517 |
| NmeAIII | GCCGAG | 1 cut(s) | 102 |
| PaeR7I | CTCGAG | 1 cut(s) | 215 |
| PciSI | GCTCTTC | 1 cut(s) | 243 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 80 |
| PfeI | GAWTC | 2 cut(s) | 346, 503 |
| PkrI | GCNGC | 4 cut(s) | 43, 46, 144, 527 |
| PleI | GAGTC | 3 cut(s) | 294, 348, 469 |
| PpsI | GAGTC | 3 cut(s) | 294, 348, 469 |
| PshBI | ATTAAT | 1 cut(s) | 171 |
| Psp124BI | GAGCTC | 1 cut(s) | 159 |
| Psp6I | CCWGG | 1 cut(s) | 35 |
| PspEI | GGTNACC | 1 cut(s) | 539 |
| PspGI | CCWGG | 1 cut(s) | 35 |
| PspN4I | GGNNCC | 2 cut(s) | 34, 517 |
| PspPI | GGNCC | 2 cut(s) | 15, 39 |
| PspXI | VCTCGAGB | 1 cut(s) | 215 |
| PstNI | CAGNNNCTG | 1 cut(s) | 349 |
| PsuI | RGATCY | 3 cut(s) | 210, 241, 468 |
| PvuII | CAGCTG | 1 cut(s) | 163 |
| RsaI | GTAC | 3 cut(s) | 82, 104, 535 |
| RsaNI | GTAC | 3 cut(s) | 81, 103, 534 |
| SacI | GAGCTC | 1 cut(s) | 159 |
| SapI | GCTCTTC | 1 cut(s) | 243 |
| SaqAI | TTAA | 2 cut(s) | 171, 398 |
| SatI | GCNGC | 4 cut(s) | 42, 45, 143, 526 |
| Sau3AI | GATC | 3 cut(s) | 210, 241, 468 |
| Sau96I | GGNCC | 2 cut(s) | 15, 39 |
| ScaI | AGTACT | 1 cut(s) | 535 |
| SchI | GAGTC | 3 cut(s) | 294, 349, 470 |
| ScrFI | CCNGG | 1 cut(s) | 37 |
| SduI | GDGCHC | 1 cut(s) | 159 |
| SfaNI | GCATC | 2 cut(s) | 405, 506 |
| SfcI | CTRYAG | 1 cut(s) | 529 |
| Sfr274I | CTCGAG | 1 cut(s) | 215 |
| SinI | GGWCC | 1 cut(s) | 15 |
| SlaI | CTCGAG | 1 cut(s) | 215 |
| SmlI | CTYRAG | 1 cut(s) | 215 |
| SmoI | CTYRAG | 1 cut(s) | 215 |
| Sse9I | AATT | 3 cut(s) | 107, 266, 395 |
| SsiI | CCGC | 3 cut(s) | 42, 203, 226 |
| SspMI | CTAG | 1 cut(s) | 245 |
| SstI | GAGCTC | 1 cut(s) | 159 |
| StyD4I | CCNGG | 1 cut(s) | 35 |
| StyI | CCWWGG | 1 cut(s) | 18 |
| TaaI | ACNGT | 1 cut(s) | 533 |
| TaqI | TCGA | 1 cut(s) | 216 |
| TasI | AATT | 3 cut(s) | 107, 266, 395 |
| TatI | WGTACW | 1 cut(s) | 533 |
| TauI | GCSGC | 1 cut(s) | 44 |
| TfiI | GAWTC | 2 cut(s) | 346, 503 |
| Tru1I | TTAA | 2 cut(s) | 171, 398 |
| Tru9I | TTAA | 2 cut(s) | 171, 398 |
| TscAI | CASTG | 2 cut(s) | 121, 313 |
| TseI | GCWGC | 3 cut(s) | 44, 142, 525 |
| TspDTI | ATGAA | 3 cut(s) | 279, 447, 495 |
| TspGWI | ACGGA | 1 cut(s) | 427 |
| TspRI | CASTG | 2 cut(s) | 121, 313 |
| VpaK11BI | GGWCC | 1 cut(s) | 15 |
| VspI | ATTAAT | 1 cut(s) | 171 |
| XbaI | TCTAGA | 1 cut(s) | 244 |
| XhoI | CTCGAG | 1 cut(s) | 215 |
| XspI | CTAG | 1 cut(s) | 245 |
| ZrmI | AGTACT | 1 cut(s) | 535 |