MADS-box protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 35 |
| AcsI | RAATTY | 1 cut(s) | 98 |
| AcuI | CTGAAG | 1 cut(s) | 208 |
| AfaI | GTAC | 1 cut(s) | 9 |
| AgsI | TTSAA | 3 cut(s) | 104, 141, 308 |
| AhlI | ACTAGT | 1 cut(s) | 17 |
| AluBI | AGCT | 2 cut(s) | 44, 329 |
| AluI | AGCT | 2 cut(s) | 44, 329 |
| Alw21I | GWGCWC | 2 cut(s) | 17, 112 |
| Alw26I | GTCTC | 2 cut(s) | 149, 238 |
| Alw44I | GTGCAC | 1 cut(s) | 13 |
| ApaLI | GTGCAC | 1 cut(s) | 13 |
| ApeKI | GCWGC | 1 cut(s) | 190 |
| ApoI | RAATTY | 1 cut(s) | 98 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 60 |
| BaeGI | GKGCMC | 1 cut(s) | 17 |
| BbsI | GAAGAC | 1 cut(s) | 356 |
| Bbv12I | GWGCWC | 2 cut(s) | 17, 112 |
| BbvI | GCAGC | 1 cut(s) | 202 |
| BccI | CCATC | 1 cut(s) | 32 |
| BcoDI | GTCTC | 2 cut(s) | 149, 238 |
| BcuI | ACTAGT | 1 cut(s) | 17 |
| BfaI | CTAG | 3 cut(s) | 18, 152, 237 |
| BglII | AGATCT | 1 cut(s) | 227 |
| BisI | GCNGC | 1 cut(s) | 191 |
| BlsI | GCNGC | 1 cut(s) | 192 |
| BmcAI | AGTACT | 1 cut(s) | 9 |
| BpiI | GAAGAC | 1 cut(s) | 356 |
| BpmI | CTGGAG | 1 cut(s) | 219 |
| BpuEI | CTTGAG | 1 cut(s) | 96 |
| Bsa29I | ATCGAT | 1 cut(s) | 347 |
| BsaBI | GATNNNNATC | 1 cut(s) | 232 |
| Bse1I | ACTGG | 1 cut(s) | 163 |
| Bse3DI | GCAATG | 1 cut(s) | 97 |
| Bse8I | GATNNNNATC | 1 cut(s) | 232 |
| BseCI | ATCGAT | 1 cut(s) | 347 |
| BseGI | GGATG | 1 cut(s) | 43 |
| BseJI | GATNNNNATC | 1 cut(s) | 232 |
| BseMI | GCAATG | 1 cut(s) | 97 |
| BseNI | ACTGG | 1 cut(s) | 163 |
| BseSI | GKGCMC | 1 cut(s) | 17 |
| BseXI | GCAGC | 1 cut(s) | 202 |
| BseYI | CCCAGC | 1 cut(s) | 44 |
| BsgI | GTGCAG | 1 cut(s) | 72 |
| BshVI | ATCGAT | 1 cut(s) | 347 |
| BsiHKAI | GWGCWC | 2 cut(s) | 17, 112 |
| BslFI | GGGAC | 1 cut(s) | 40 |
| BsmAI | GTCTC | 2 cut(s) | 149, 238 |
| BsmFI | GGGAC | 1 cut(s) | 40 |
| Bsp1286I | GDGCHC | 2 cut(s) | 17, 112 |
| Bsp143I | GATC | 1 cut(s) | 227 |
| BspACI | CCGC | 1 cut(s) | 35 |
| BspDI | ATCGAT | 1 cut(s) | 347 |
| BsrDI | GCAATG | 1 cut(s) | 97 |
| BsrI | ACTGG | 1 cut(s) | 163 |
| BssMI | GATC | 1 cut(s) | 227 |
| Bst4CI | ACNGT | 1 cut(s) | 12 |
| Bst6I | CTCTTC | 3 cut(s) | 114, 157, 293 |
| BstC8I | GCNNGC | 1 cut(s) | 195 |
| BstF5I | GGATG | 1 cut(s) | 43 |
| BstKTI | GATC | 1 cut(s) | 230 |
| BstMAI | GTCTC | 2 cut(s) | 149, 238 |
| BstMBI | GATC | 1 cut(s) | 227 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 41, 50 |
| BstNSI | RCATGY | 1 cut(s) | 197 |
| BstSLI | GKGCMC | 1 cut(s) | 17 |
| BstV1I | GCAGC | 1 cut(s) | 202 |
| BstV2I | GAAGAC | 1 cut(s) | 356 |
| BstX2I | RGATCY | 1 cut(s) | 227 |
| BstYI | RGATCY | 1 cut(s) | 227 |
| Bsu15I | ATCGAT | 1 cut(s) | 347 |
| BsuTUI | ATCGAT | 1 cut(s) | 347 |
| BtsCI | GGATG | 1 cut(s) | 43 |
| Cac8I | GCNNGC | 1 cut(s) | 195 |
| ClaI | ATCGAT | 1 cut(s) | 347 |
| Csp6I | GTAC | 1 cut(s) | 8 |
| CviAII | CATG | 3 cut(s) | 81, 194, 380 |
| CviJI | RGCY | 3 cut(s) | 44, 258, 329 |
| CviKI_1 | RGCY | 3 cut(s) | 44, 258, 329 |
| CviQI | GTAC | 1 cut(s) | 8 |
| DpnI | GATC | 1 cut(s) | 229 |
| DpnII | GATC | 1 cut(s) | 227 |
| Eam1104I | CTCTTC | 3 cut(s) | 114, 157, 293 |
| EarI | CTCTTC | 3 cut(s) | 114, 157, 293 |
| Eco57I | CTGAAG | 1 cut(s) | 208 |
| FaeI | CATG | 3 cut(s) | 84, 197, 383 |
| FaiI | YATR | 9 cut(s) | 82, 130, 195, 233, 278, 284, 333, 381, 393 |
| FaqI | GGGAC | 1 cut(s) | 40 |
| FatI | CATG | 3 cut(s) | 80, 193, 379 |
| Fnu4HI | GCNGC | 1 cut(s) | 191 |
| FokI | GGATG | 1 cut(s) | 50 |
| Fsp4HI | GCNGC | 1 cut(s) | 191 |
| FspBI | CTAG | 3 cut(s) | 18, 152, 237 |
| GluI | GCNGC | 1 cut(s) | 191 |
| GsaI | CCCAGC | 1 cut(s) | 48 |
| GsuI | CTGGAG | 1 cut(s) | 219 |
| Hin1II | CATG | 3 cut(s) | 84, 197, 383 |
| HinfI | GANTC | 3 cut(s) | 301, 323, 335 |
| Hpy166II | GTNNAC | 1 cut(s) | 15 |
| Hpy188I | TCNGA | 1 cut(s) | 227 |
| Hpy188III | TCNNGA | 1 cut(s) | 305 |
| Hpy8I | GTNNAC | 1 cut(s) | 15 |
| HpyAV | CCTTC | 1 cut(s) | 287 |
| HpyCH4III | ACNGT | 1 cut(s) | 12 |
| HpyCH4V | TGCA | 7 cut(s) | 4, 15, 53, 84, 90, 128, 190 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 41, 50 |
| Hsp92II | CATG | 3 cut(s) | 84, 197, 383 |
| Kzo9I | GATC | 1 cut(s) | 227 |
| LmnI | GCTCC | 1 cut(s) | 41 |
| LpnPI | CCDG | 5 cut(s) | 30, 144, 183, 254, 297 |
| Lsp1109I | GCAGC | 1 cut(s) | 202 |
| MaeI | CTAG | 3 cut(s) | 18, 152, 237 |
| MaeIII | GTNAC | 1 cut(s) | 20 |
| MalI | GATC | 1 cut(s) | 229 |
| MboI | GATC | 1 cut(s) | 227 |
| MboII | GAAGA | 5 cut(s) | 131, 174, 310, 356, 396 |
| MfeI | CAATTG | 1 cut(s) | 141 |
| MflI | RGATCY | 1 cut(s) | 227 |
| MhlI | GDGCHC | 2 cut(s) | 17, 112 |
| MluCI | AATT | 6 cut(s) | 98, 141, 177, 285, 357, 388 |
| MlyI | GAGTC | 2 cut(s) | 310, 344 |
| MmeI | TCCRAC | 1 cut(s) | 191 |
| MnlI | CCTC | 1 cut(s) | 158 |
| MroXI | GAANNNNTTC | 1 cut(s) | 60 |
| MseI | TTAA | 1 cut(s) | 171 |
| MslI | CAYNNNNRTG | 2 cut(s) | 85, 287 |
| MunI | CAATTG | 1 cut(s) | 141 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 41, 50 |
| NdeII | GATC | 1 cut(s) | 227 |
| NlaIII | CATG | 3 cut(s) | 84, 197, 383 |
| NmuCI | GTSAC | 1 cut(s) | 20 |
| NspI | RCATGY | 1 cut(s) | 197 |
| PaeI | GCATGC | 1 cut(s) | 197 |
| PdmI | GAANNNNTTC | 1 cut(s) | 60 |
| PfeI | GAWTC | 1 cut(s) | 323 |
| PkrI | GCNGC | 1 cut(s) | 192 |
| PleI | GAGTC | 2 cut(s) | 309, 343 |
| PpsI | GAGTC | 2 cut(s) | 309, 343 |
| PspFI | CCCAGC | 1 cut(s) | 44 |
| PsuI | RGATCY | 1 cut(s) | 227 |
| RsaI | GTAC | 1 cut(s) | 9 |
| RsaNI | GTAC | 1 cut(s) | 8 |
| RseI | CAYNNNNRTG | 2 cut(s) | 85, 287 |
| SaqAI | TTAA | 1 cut(s) | 171 |
| SatI | GCNGC | 1 cut(s) | 191 |
| Sau3AI | GATC | 1 cut(s) | 227 |
| ScaI | AGTACT | 1 cut(s) | 9 |
| SchI | GAGTC | 2 cut(s) | 310, 344 |
| SduI | GDGCHC | 2 cut(s) | 17, 112 |
| SetI | ASST | 4 cut(s) | 46, 254, 273, 331 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 85, 287 |
| SmlI | CTYRAG | 1 cut(s) | 111 |
| SmoI | CTYRAG | 1 cut(s) | 111 |
| SpeI | ACTAGT | 1 cut(s) | 17 |
| SphI | GCATGC | 1 cut(s) | 197 |
| Sse9I | AATT | 6 cut(s) | 98, 141, 177, 285, 357, 388 |
| SsiI | CCGC | 1 cut(s) | 35 |
| SspMI | CTAG | 3 cut(s) | 18, 152, 237 |
| TaaI | ACNGT | 1 cut(s) | 12 |
| TaqI | TCGA | 1 cut(s) | 347 |
| TasI | AATT | 6 cut(s) | 98, 141, 177, 285, 357, 388 |
| TatI | WGTACW | 1 cut(s) | 7 |
| TfiI | GAWTC | 1 cut(s) | 323 |
| Tru1I | TTAA | 1 cut(s) | 171 |
| Tru9I | TTAA | 1 cut(s) | 171 |
| TseFI | GTSAC | 1 cut(s) | 20 |
| TseI | GCWGC | 1 cut(s) | 190 |
| Tsp45I | GTSAC | 1 cut(s) | 20 |
| TspDTI | ATGAA | 5 cut(s) | 69, 111, 162, 293, 356 |
| VneI | GTGCAC | 1 cut(s) | 13 |
| XapI | RAATTY | 1 cut(s) | 98 |
| XceI | RCATGY | 1 cut(s) | 197 |
| XmnI | GAANNNNTTC | 1 cut(s) | 60 |
| XspI | CTAG | 3 cut(s) | 18, 152, 237 |
| ZrmI | AGTACT | 1 cut(s) | 9 |