MADS-box protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| K-box | PF01486 | 28 - 109 | 4e-14 | K-box region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 135 |
| AciI | CCGC | 1 cut(s) | 133 |
| AclWI | GGATC | 1 cut(s) | 168 |
| AfaI | GTAC | 2 cut(s) | 38, 369 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 518 |
| AgsI | TTSAA | 4 cut(s) | 53, 190, 212, 278 |
| AluBI | AGCT | 6 cut(s) | 85, 91, 118, 290, 362, 441 |
| AluI | AGCT | 6 cut(s) | 85, 91, 118, 290, 362, 441 |
| Alw21I | GWGCWC | 1 cut(s) | 87 |
| AlwI | GGATC | 1 cut(s) | 168 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 444 |
| ApeKI | GCWGC | 3 cut(s) | 438, 441, 444 |
| AspLEI | GCGC | 2 cut(s) | 46, 449 |
| AsuHPI | GGTGA | 1 cut(s) | 167 |
| AsuNHI | GCTAGC | 1 cut(s) | 434 |
| BanII | GRGCYC | 1 cut(s) | 87 |
| Bbv12I | GWGCWC | 1 cut(s) | 87 |
| BbvI | GCAGC | 3 cut(s) | 428, 431, 450 |
| BccI | CCATC | 1 cut(s) | 322 |
| BceAI | ACGGC | 1 cut(s) | 210 |
| BfaI | CTAG | 2 cut(s) | 12, 435 |
| BisI | GCNGC | 3 cut(s) | 439, 442, 445 |
| BlsI | GCNGC | 3 cut(s) | 440, 443, 446 |
| BmsI | GCATC | 1 cut(s) | 108 |
| BmtI | GCTAGC | 1 cut(s) | 438 |
| BpmI | CTGGAG | 1 cut(s) | 71 |
| Bpu10I | CCTNAGC | 1 cut(s) | 140 |
| BpuEI | CTTGAG | 1 cut(s) | 101 |
| BsaJI | CCNNGG | 3 cut(s) | 240, 375, 517 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 518 |
| Bse1I | ACTGG | 1 cut(s) | 457 |
| BseDI | CCNNGG | 3 cut(s) | 240, 375, 517 |
| BseGI | GGATG | 3 cut(s) | 28, 187, 339 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 518 |
| BseMII | CTCAG | 1 cut(s) | 282 |
| BseNI | ACTGG | 1 cut(s) | 457 |
| BseXI | GCAGC | 3 cut(s) | 428, 431, 450 |
| Bsh1236I | CGCG | 1 cut(s) | 135 |
| BsiHKAI | GWGCWC | 1 cut(s) | 87 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 518 |
| Bsp1286I | GDGCHC | 1 cut(s) | 87 |
| Bsp143I | GATC | 2 cut(s) | 94, 160 |
| BspACI | CCGC | 1 cut(s) | 133 |
| BspCNI | CTCAG | 1 cut(s) | 283 |
| BspFNI | CGCG | 1 cut(s) | 135 |
| BspOI | GCTAGC | 1 cut(s) | 438 |
| BspPI | GGATC | 1 cut(s) | 168 |
| BsrI | ACTGG | 1 cut(s) | 457 |
| BssECI | CCNNGG | 3 cut(s) | 240, 375, 517 |
| BssMI | GATC | 2 cut(s) | 94, 160 |
| BssT1I | CCWWGG | 2 cut(s) | 240, 375 |
| Bst4CI | ACNGT | 1 cut(s) | 518 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 444 |
| BstC8I | GCNNGC | 3 cut(s) | 120, 137, 436 |
| BstDEI | CTNAG | 3 cut(s) | 140, 221, 291 |
| BstDSI | CCRYGG | 1 cut(s) | 517 |
| BstF5I | GGATG | 3 cut(s) | 28, 187, 339 |
| BstFNI | CGCG | 1 cut(s) | 135 |
| BstHHI | GCGC | 2 cut(s) | 46, 449 |
| BstKTI | GATC | 2 cut(s) | 97, 163 |
| BstMBI | GATC | 2 cut(s) | 94, 160 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 278, 287, 431, 444 |
| BstUI | CGCG | 1 cut(s) | 135 |
| BstV1I | GCAGC | 3 cut(s) | 428, 431, 450 |
| BstX2I | RGATCY | 1 cut(s) | 160 |
| BstYI | RGATCY | 1 cut(s) | 160 |
| BtgI | CCRYGG | 1 cut(s) | 517 |
| BtsCI | GGATG | 3 cut(s) | 28, 187, 339 |
| Cac8I | GCNNGC | 3 cut(s) | 120, 137, 436 |
| CaiI | CAGNNNCTG | 1 cut(s) | 444 |
| CfoI | GCGC | 2 cut(s) | 46, 449 |
| Csp6I | GTAC | 2 cut(s) | 37, 368 |
| CviQI | GTAC | 2 cut(s) | 37, 368 |
| DdeI | CTNAG | 3 cut(s) | 140, 221, 291 |
| DpnI | GATC | 2 cut(s) | 96, 162 |
| DpnII | GATC | 2 cut(s) | 94, 160 |
| Ecl136II | GAGCTC | 1 cut(s) | 85 |
| Eco130I | CCWWGG | 2 cut(s) | 240, 375 |
| Eco24I | GRGCYC | 1 cut(s) | 87 |
| Eco32I | GATATC | 2 cut(s) | 339, 388 |
| Eco53kI | GAGCTC | 1 cut(s) | 85 |
| EcoICRI | GAGCTC | 1 cut(s) | 85 |
| EcoRV | GATATC | 2 cut(s) | 339, 388 |
| EcoT14I | CCWWGG | 2 cut(s) | 240, 375 |
| EcoT38I | GRGCYC | 1 cut(s) | 87 |
| ErhI | CCWWGG | 2 cut(s) | 240, 375 |
| FaiI | YATR | 4 cut(s) | 8, 179, 257, 269 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 204, 236 |
| FauI | CCCGC | 1 cut(s) | 140 |
| Fnu4HI | GCNGC | 3 cut(s) | 439, 442, 445 |
| FokI | GGATG | 3 cut(s) | 35, 194, 346 |
| FriOI | GRGCYC | 1 cut(s) | 87 |
| Fsp4HI | GCNGC | 3 cut(s) | 439, 442, 445 |
| FspBI | CTAG | 2 cut(s) | 12, 435 |
| GlaI | GCGC | 2 cut(s) | 45, 448 |
| GluI | GCNGC | 3 cut(s) | 439, 442, 445 |
| GsuI | CTGGAG | 1 cut(s) | 71 |
| HhaI | GCGC | 2 cut(s) | 46, 449 |
| Hin6I | GCGC | 2 cut(s) | 44, 447 |
| HinP1I | GCGC | 2 cut(s) | 44, 447 |
| HincII | GTYRAC | 1 cut(s) | 472 |
| HindII | GTYRAC | 1 cut(s) | 472 |
| HinfI | GANTC | 4 cut(s) | 71, 380, 419, 473 |
| HphI | GGTGA | 1 cut(s) | 167 |
| Hpy166II | GTNNAC | 2 cut(s) | 368, 472 |
| Hpy188I | TCNGA | 2 cut(s) | 385, 418 |
| Hpy188III | TCNNGA | 2 cut(s) | 80, 164 |
| Hpy8I | GTNNAC | 2 cut(s) | 368, 472 |
| HpyAV | CCTTC | 3 cut(s) | 161, 206, 398 |
| HpyCH4III | ACNGT | 1 cut(s) | 518 |
| HpyCH4V | TGCA | 3 cut(s) | 32, 122, 347 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 278, 287, 431, 444 |
| HpyF3I | CTNAG | 3 cut(s) | 140, 221, 291 |
| HspAI | GCGC | 2 cut(s) | 44, 447 |
| Kzo9I | GATC | 2 cut(s) | 94, 160 |
| LmnI | GCTCC | 4 cut(s) | 90, 115, 199, 287 |
| LpnPI | CCDG | 6 cut(s) | 101, 149, 188, 348, 438, 477 |
| Lsp1109I | GCAGC | 3 cut(s) | 428, 431, 450 |
| LweI | GCATC | 1 cut(s) | 108 |
| MaeI | CTAG | 2 cut(s) | 12, 435 |
| MalI | GATC | 2 cut(s) | 96, 162 |
| MboI | GATC | 2 cut(s) | 94, 160 |
| MboII | GAAGA | 4 cut(s) | 202, 257, 413, 450 |
| MflI | RGATCY | 1 cut(s) | 160 |
| MhlI | GDGCHC | 1 cut(s) | 87 |
| MluCI | AATT | 1 cut(s) | 194 |
| MlyI | GAGTC | 3 cut(s) | 80, 389, 467 |
| MmeI | TCCRAC | 3 cut(s) | 48, 279, 363 |
| MnlI | CCTC | 2 cut(s) | 151, 209 |
| MseI | TTAA | 1 cut(s) | 317 |
| MspA1I | CMGCKG | 1 cut(s) | 441 |
| MvnI | CGCG | 1 cut(s) | 135 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 278, 287, 431, 444 |
| NdeII | GATC | 2 cut(s) | 94, 160 |
| NheI | GCTAGC | 1 cut(s) | 434 |
| PfeI | GAWTC | 1 cut(s) | 419 |
| PkrI | GCNGC | 3 cut(s) | 440, 443, 446 |
| PleI | GAGTC | 3 cut(s) | 79, 388, 467 |
| PpsI | GAGTC | 3 cut(s) | 79, 388, 467 |
| Psp124BI | GAGCTC | 1 cut(s) | 87 |
| PstNI | CAGNNNCTG | 1 cut(s) | 444 |
| PsuI | RGATCY | 1 cut(s) | 160 |
| PvuII | CAGCTG | 1 cut(s) | 441 |
| RsaI | GTAC | 2 cut(s) | 38, 369 |
| RsaNI | GTAC | 2 cut(s) | 37, 368 |
| SacI | GAGCTC | 1 cut(s) | 87 |
| SaqAI | TTAA | 1 cut(s) | 317 |
| SatI | GCNGC | 3 cut(s) | 439, 442, 445 |
| Sau3AI | GATC | 2 cut(s) | 94, 160 |
| SchI | GAGTC | 3 cut(s) | 80, 389, 467 |
| SduI | GDGCHC | 1 cut(s) | 87 |
| SfaNI | GCATC | 1 cut(s) | 108 |
| SmlI | CTYRAG | 1 cut(s) | 80 |
| SmoI | CTYRAG | 1 cut(s) | 80 |
| Sse9I | AATT | 1 cut(s) | 194 |
| SsiI | CCGC | 1 cut(s) | 133 |
| SspMI | CTAG | 2 cut(s) | 12, 435 |
| SstI | GAGCTC | 1 cut(s) | 87 |
| StyI | CCWWGG | 2 cut(s) | 240, 375 |
| TaaI | ACNGT | 1 cut(s) | 518 |
| TasI | AATT | 1 cut(s) | 194 |
| TatI | WGTACW | 1 cut(s) | 367 |
| TfiI | GAWTC | 1 cut(s) | 419 |
| Tru1I | TTAA | 1 cut(s) | 317 |
| Tru9I | TTAA | 1 cut(s) | 317 |
| TseI | GCWGC | 3 cut(s) | 438, 441, 444 |
| TspDTI | ATGAA | 1 cut(s) | 164 |
| XspI | CTAG | 2 cut(s) | 12, 435 |