MADS-box protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| K-box | PF01486 | 48 - 128 | 5.1e-14 | K-box region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 192 |
| AciI | CCGC | 1 cut(s) | 190 |
| AclWI | GGATC | 1 cut(s) | 225 |
| AcoI | YGGCCR | 1 cut(s) | 280 |
| AfaI | GTAC | 2 cut(s) | 95, 426 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 575 |
| AgsI | TTSAA | 5 cut(s) | 43, 110, 247, 269, 335 |
| AhlI | ACTAGT | 1 cut(s) | 19 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 261, 293 |
| AluBI | AGCT | 6 cut(s) | 11, 142, 148, 347, 419, 498 |
| AluI | AGCT | 6 cut(s) | 11, 142, 148, 347, 419, 498 |
| Alw21I | GWGCWC | 1 cut(s) | 144 |
| AlwI | GGATC | 1 cut(s) | 225 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 501 |
| AoxI | GGCC | 1 cut(s) | 280 |
| ApeKI | GCWGC | 3 cut(s) | 495, 498, 501 |
| AspLEI | GCGC | 3 cut(s) | 28, 103, 506 |
| AsuHPI | GGTGA | 2 cut(s) | 25, 224 |
| AsuNHI | GCTAGC | 2 cut(s) | 11, 491 |
| AxyI | CCTNAGG | 1 cut(s) | 47 |
| BanII | GRGCYC | 1 cut(s) | 144 |
| Bbv12I | GWGCWC | 1 cut(s) | 144 |
| BbvI | GCAGC | 3 cut(s) | 485, 488, 507 |
| BccI | CCATC | 2 cut(s) | 139, 379 |
| BceAI | ACGGC | 1 cut(s) | 267 |
| BcuI | ACTAGT | 1 cut(s) | 19 |
| BfaI | CTAG | 4 cut(s) | 12, 20, 492, 507 |
| BfoI | RGCGCY | 1 cut(s) | 29 |
| BisI | GCNGC | 3 cut(s) | 496, 499, 502 |
| BlsI | GCNGC | 3 cut(s) | 497, 500, 503 |
| BmiI | GGNNCC | 2 cut(s) | 53, 129 |
| BmsI | GCATC | 1 cut(s) | 165 |
| BmtI | GCTAGC | 2 cut(s) | 15, 495 |
| BpmI | CTGGAG | 1 cut(s) | 128 |
| Bpu10I | CCTNAGC | 1 cut(s) | 197 |
| BpuEI | CTTGAG | 1 cut(s) | 158 |
| BsaJI | CCNNGG | 3 cut(s) | 297, 432, 574 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 575 |
| Bse21I | CCTNAGG | 1 cut(s) | 47 |
| BseDI | CCNNGG | 3 cut(s) | 297, 432, 574 |
| BseGI | GGATG | 3 cut(s) | 85, 244, 396 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 575 |
| BseMII | CTCAG | 2 cut(s) | 61, 339 |
| BseXI | GCAGC | 3 cut(s) | 485, 488, 507 |
| Bsh1236I | CGCG | 1 cut(s) | 192 |
| BshFI | GGCC | 1 cut(s) | 282 |
| BsiHKAI | GWGCWC | 1 cut(s) | 144 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 575 |
| BsnI | GGCC | 1 cut(s) | 282 |
| Bsp1286I | GDGCHC | 1 cut(s) | 144 |
| Bsp143I | GATC | 2 cut(s) | 151, 217 |
| BspACI | CCGC | 1 cut(s) | 190 |
| BspANI | GGCC | 1 cut(s) | 282 |
| BspCNI | CTCAG | 2 cut(s) | 60, 340 |
| BspFNI | CGCG | 1 cut(s) | 192 |
| BspLI | GGNNCC | 2 cut(s) | 53, 129 |
| BspOI | GCTAGC | 2 cut(s) | 15, 495 |
| BspPI | GGATC | 1 cut(s) | 225 |
| BssECI | CCNNGG | 3 cut(s) | 297, 432, 574 |
| BssMI | GATC | 2 cut(s) | 151, 217 |
| BssT1I | CCWWGG | 2 cut(s) | 297, 432 |
| Bst4CI | ACNGT | 1 cut(s) | 575 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 501 |
| BstC8I | GCNNGC | 3 cut(s) | 13, 194, 493 |
| BstDEI | CTNAG | 3 cut(s) | 47, 197, 348 |
| BstDSI | CCRYGG | 1 cut(s) | 574 |
| BstF5I | GGATG | 3 cut(s) | 85, 244, 396 |
| BstFNI | CGCG | 1 cut(s) | 192 |
| BstH2I | RGCGCY | 1 cut(s) | 29 |
| BstHHI | GCGC | 3 cut(s) | 28, 103, 506 |
| BstKTI | GATC | 2 cut(s) | 154, 220 |
| BstMBI | GATC | 2 cut(s) | 151, 217 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 335, 344, 488, 501 |
| BstUI | CGCG | 1 cut(s) | 192 |
| BstV1I | GCAGC | 3 cut(s) | 485, 488, 507 |
| BstX2I | RGATCY | 1 cut(s) | 217 |
| BstYI | RGATCY | 1 cut(s) | 217 |
| Bsu36I | CCTNAGG | 1 cut(s) | 47 |
| BsuRI | GGCC | 1 cut(s) | 282 |
| BtgI | CCRYGG | 1 cut(s) | 574 |
| BtsCI | GGATG | 3 cut(s) | 85, 244, 396 |
| Cac8I | GCNNGC | 3 cut(s) | 13, 194, 493 |
| CaiI | CAGNNNCTG | 1 cut(s) | 501 |
| CfoI | GCGC | 3 cut(s) | 28, 103, 506 |
| Csp6I | GTAC | 2 cut(s) | 94, 425 |
| CviQI | GTAC | 2 cut(s) | 94, 425 |
| DdeI | CTNAG | 3 cut(s) | 47, 197, 348 |
| DpnI | GATC | 2 cut(s) | 153, 219 |
| DpnII | GATC | 2 cut(s) | 151, 217 |
| EaeI | YGGCCR | 1 cut(s) | 280 |
| Ecl136II | GAGCTC | 1 cut(s) | 142 |
| Eco130I | CCWWGG | 2 cut(s) | 297, 432 |
| Eco24I | GRGCYC | 1 cut(s) | 144 |
| Eco32I | GATATC | 2 cut(s) | 396, 445 |
| Eco53kI | GAGCTC | 1 cut(s) | 142 |
| Eco81I | CCTNAGG | 1 cut(s) | 47 |
| EcoICRI | GAGCTC | 1 cut(s) | 142 |
| EcoRV | GATATC | 2 cut(s) | 396, 445 |
| EcoT14I | CCWWGG | 2 cut(s) | 297, 432 |
| EcoT38I | GRGCYC | 1 cut(s) | 144 |
| ErhI | CCWWGG | 2 cut(s) | 297, 432 |
| FaiI | YATR | 3 cut(s) | 236, 314, 326 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 261, 293 |
| FauI | CCCGC | 1 cut(s) | 197 |
| Fnu4HI | GCNGC | 3 cut(s) | 496, 499, 502 |
| FokI | GGATG | 3 cut(s) | 92, 251, 403 |
| FriOI | GRGCYC | 1 cut(s) | 144 |
| Fsp4HI | GCNGC | 3 cut(s) | 496, 499, 502 |
| FspBI | CTAG | 4 cut(s) | 12, 20, 492, 507 |
| GlaI | GCGC | 3 cut(s) | 27, 102, 505 |
| GluI | GCNGC | 3 cut(s) | 496, 499, 502 |
| GsuI | CTGGAG | 1 cut(s) | 128 |
| HaeII | RGCGCY | 1 cut(s) | 29 |
| HaeIII | GGCC | 1 cut(s) | 282 |
| HhaI | GCGC | 3 cut(s) | 28, 103, 506 |
| Hin6I | GCGC | 3 cut(s) | 26, 101, 504 |
| HinP1I | GCGC | 3 cut(s) | 26, 101, 504 |
| HincII | GTYRAC | 1 cut(s) | 529 |
| HindII | GTYRAC | 1 cut(s) | 529 |
| HinfI | GANTC | 3 cut(s) | 437, 476, 530 |
| HphI | GGTGA | 2 cut(s) | 25, 224 |
| Hpy166II | GTNNAC | 2 cut(s) | 425, 529 |
| Hpy188I | TCNGA | 2 cut(s) | 442, 475 |
| Hpy188III | TCNNGA | 2 cut(s) | 137, 221 |
| Hpy8I | GTNNAC | 2 cut(s) | 425, 529 |
| HpyAV | CCTTC | 5 cut(s) | 40, 49, 218, 263, 455 |
| HpyCH4III | ACNGT | 1 cut(s) | 575 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 89, 179, 404 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 335, 344, 488, 501 |
| HpyF3I | CTNAG | 3 cut(s) | 47, 197, 348 |
| HspAI | GCGC | 3 cut(s) | 26, 101, 504 |
| Kzo9I | GATC | 2 cut(s) | 151, 217 |
| LmnI | GCTCC | 4 cut(s) | 127, 147, 256, 344 |
| LpnPI | CCDG | 6 cut(s) | 34, 158, 206, 245, 405, 534 |
| Lsp1109I | GCAGC | 3 cut(s) | 485, 488, 507 |
| LweI | GCATC | 1 cut(s) | 165 |
| MaeI | CTAG | 4 cut(s) | 12, 20, 492, 507 |
| MalI | GATC | 2 cut(s) | 153, 219 |
| MboI | GATC | 2 cut(s) | 151, 217 |
| MboII | GAAGA | 4 cut(s) | 259, 314, 470, 507 |
| MflI | RGATCY | 1 cut(s) | 217 |
| MhlI | GDGCHC | 1 cut(s) | 144 |
| MluCI | AATT | 2 cut(s) | 242, 251 |
| MlyI | GAGTC | 2 cut(s) | 446, 524 |
| MmeI | TCCRAC | 3 cut(s) | 105, 336, 420 |
| MnlI | CCTC | 4 cut(s) | 56, 65, 208, 266 |
| MseI | TTAA | 1 cut(s) | 374 |
| MspA1I | CMGCKG | 1 cut(s) | 498 |
| MvnI | CGCG | 1 cut(s) | 192 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 335, 344, 488, 501 |
| NdeII | GATC | 2 cut(s) | 151, 217 |
| NheI | GCTAGC | 2 cut(s) | 11, 491 |
| NlaIV | GGNNCC | 2 cut(s) | 53, 129 |
| PfeI | GAWTC | 1 cut(s) | 476 |
| PkrI | GCNGC | 3 cut(s) | 497, 500, 503 |
| PleI | GAGTC | 2 cut(s) | 445, 524 |
| PpsI | GAGTC | 2 cut(s) | 445, 524 |
| Psp124BI | GAGCTC | 1 cut(s) | 144 |
| PspN4I | GGNNCC | 2 cut(s) | 53, 129 |
| PstNI | CAGNNNCTG | 1 cut(s) | 501 |
| PsuI | RGATCY | 1 cut(s) | 217 |
| PvuII | CAGCTG | 1 cut(s) | 498 |
| RsaI | GTAC | 2 cut(s) | 95, 426 |
| RsaNI | GTAC | 2 cut(s) | 94, 425 |
| SacI | GAGCTC | 1 cut(s) | 144 |
| SaqAI | TTAA | 1 cut(s) | 374 |
| SatI | GCNGC | 3 cut(s) | 496, 499, 502 |
| Sau3AI | GATC | 2 cut(s) | 151, 217 |
| SchI | GAGTC | 2 cut(s) | 446, 524 |
| SduI | GDGCHC | 1 cut(s) | 144 |
| SfaNI | GCATC | 1 cut(s) | 165 |
| SmlI | CTYRAG | 1 cut(s) | 137 |
| SmoI | CTYRAG | 1 cut(s) | 137 |
| SpeI | ACTAGT | 1 cut(s) | 19 |
| Sse9I | AATT | 2 cut(s) | 242, 251 |
| SsiI | CCGC | 1 cut(s) | 190 |
| SspMI | CTAG | 4 cut(s) | 12, 20, 492, 507 |
| SstI | GAGCTC | 1 cut(s) | 144 |
| StyI | CCWWGG | 2 cut(s) | 297, 432 |
| TaaI | ACNGT | 1 cut(s) | 575 |
| TasI | AATT | 2 cut(s) | 242, 251 |
| TatI | WGTACW | 1 cut(s) | 424 |
| TfiI | GAWTC | 1 cut(s) | 476 |
| Tru1I | TTAA | 1 cut(s) | 374 |
| Tru9I | TTAA | 1 cut(s) | 374 |
| TseI | GCWGC | 3 cut(s) | 495, 498, 501 |
| TspDTI | ATGAA | 2 cut(s) | 221, 255 |
| XspI | CTAG | 4 cut(s) | 12, 20, 492, 507 |