Rmu_sc0008447.1_g000001
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008447.1
OG0000389
Physical Location & Seq
Reverse (-)
7164 .. 7388
225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008447.1_g000001.1.cds

Sequence Viewer

Length: 225 bp
atgatgaagcggacgggcaagaagataaagatcgagaagattgacaacttgccggcgaggcaggtgacgtattcgaagaggagaagagggcttttgaagaaagctggagagctttcagttctatgtgattgtgagttttctgtcatcatcttttctgctactggcaagctctgtgagtcctccagctccaggtacttctccacctcctccttcttcttattttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

74

Amino Acids

8.43

Weight (kDa)

9.96

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 52
Acc36I ACCTGC 1 cut(s) 52
AciI CCGC 1 cut(s) 10
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 189
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 1 cut(s) 188
AluBI AGCT 4 cut(s) 104, 112, 169, 186
AluI AGCT 4 cut(s) 104, 112, 169, 186
AsuHPI GGTGA 1 cut(s) 76
AsuII TTCGAA 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 190
BfuAI ACCTGC 1 cut(s) 52
BglI GCCNNNNNGGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 190
BpmI CTGGAG 3 cut(s) 126, 166, 172
Bpu14I TTCGAA 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 166
Bse8I GATNNNNATC 1 cut(s) 29
BseBI CCWGG 1 cut(s) 190
BseJI GATNNNNATC 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 2 cut(s) 94, 196
BsiSI CCGG 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 189
Bsp119I TTCGAA 1 cut(s) 74
Bsp143I GATC 1 cut(s) 30
BspACI CCGC 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 52
BspT104I TTCGAA 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 52
BsrI ACTGG 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 52
BssMI GATC 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 190
Bst6I CTCTTC 2 cut(s) 71, 79
BstBI TTCGAA 1 cut(s) 74
BstC8I GCNNGC 2 cut(s) 54, 167
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 188
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 2 cut(s) 54, 167
Cfr10I RCCGGY 1 cut(s) 52
Csp6I GTAC 1 cut(s) 193
CviJI RGCY 5 cut(s) 91, 104, 112, 169, 186
CviKI_1 RGCY 5 cut(s) 91, 104, 112, 169, 186
CviQI GTAC 1 cut(s) 193
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 71, 79
EarI CTCTTC 2 cut(s) 71, 79
EcoRII CCWGG 1 cut(s) 188
FaiI YATR 1 cut(s) 124
GsuI CTGGAG 3 cut(s) 126, 166, 172
HapII CCGG 1 cut(s) 53
HinfI GANTC 1 cut(s) 176
HpaII CCGG 1 cut(s) 53
HphI GGTGA 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 220
HpyCH4IV ACGT 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpySE526I ACGT 1 cut(s) 68
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 7 cut(s) 47, 66, 90, 147, 175, 196, 202
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 6 cut(s) 34, 49, 88, 96, 109, 205
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 6 cut(s) 51, 72, 80, 190, 214, 217
MroNI GCCGGC 1 cut(s) 52
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 1 cut(s) 190
MvaI CCWGG 1 cut(s) 190
MwoI GCNNNNNNNGC 1 cut(s) 58
NaeI GCCGGC 1 cut(s) 54
NdeII GATC 1 cut(s) 30
NgoMIV GCCGGC 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 64
NspV TTCGAA 1 cut(s) 74
PaqCI CACCTGC 1 cut(s) 52
PdiI GCCGGC 1 cut(s) 54
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
Sau3AI GATC 1 cut(s) 30
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 190
SetI ASST 8 cut(s) 66, 71, 106, 114, 171, 188, 194, 206
SfuI TTCGAA 1 cut(s) 74
SsiI CCGC 1 cut(s) 10
StyD4I CCNGG 1 cut(s) 188
TaiI ACGT 1 cut(s) 71
TaqI TCGA 2 cut(s) 33, 74
TseFI GTSAC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.