MD15G1384600.v1.1
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000389
Physical Location & Seq
Reverse (-)
47494643 .. 47520236
25594 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1384600.v1.1.491

Sequence Viewer

Length: 708 bp
ATGATGAGGGAGAAGATACAGATCAAGAAGATCGACTACTTGCCGGCAAGGCAGGTGACCTTCTCAAAGAGGAGAAGGGGGATTTTCAAGAAAGCTGGAGAGCTGTCGGTTCTGTGCGACTCTGAAGTAGCTGTTATCATCTTTTCTCAAACTGGCAAGCTCTTTGATTTCTCAAGCTCCAGTACCAAGGATGTGATTGCAAGGTACAACTCACGTACTGGTAGGGAAAACTCGGATCAGCCCACGCTTGATCAGTTGCAGTTGGAGAAAAAAAACAAGATCAGGCTGAGTAAGGAACTCGAGGATAAAAGCCACAAGCTGAGGCAGATGAAGGGCGAGGACCTTGAAGACTTGGATCTCGATGAACTGCAGAAGTTAGAAAAATTGGTGAAAGTAAGCCTTGGCCGTGTGATTCAAACTAAGAGAAACAAGATTATGAGTGAGATTATGGCACTTGAGAAAAAGGGAGCTGAGTTGATAGAAGCTAATAACCAGCAAAGGCAGAGGATGGTGATGTTATCCGGAGGAGATATCGGACCTGCGGCCATCATGGAGTTGGAAAACCTGAATAATATTGGAGAAGAAGGCGTGACATCTGAATCAGCCACAAATGCCACCACCTGCTCCACAAATGCTCTTTCTCTTGAAGATGACTGCTCCGACATCTTGTCTCTCAAACTCGGATGTTGGATTTTGAGGCTTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

236

Amino Acids

26.51

Weight (kDa)

8.26

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 16 - 57 8.7e-23 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 87 - 169 1.1e-10 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 43, 629
Acc36I ACCTGC 3 cut(s) 43, 547, 629
AccIII TCCGGA 1 cut(s) 521
AciI CCGC 1 cut(s) 542
AclWI GGATC 2 cut(s) 243, 363
AcoI YGGCCR 2 cut(s) 403, 543
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 3 cut(s) 184, 206, 217
AgsI TTSAA 4 cut(s) 88, 347, 416, 647
AhdI GACNNNNNGTC 1 cut(s) 667
AluBI AGCT 8 cut(s) 95, 103, 131, 160, 177, 319, 470, 485
AluI AGCT 8 cut(s) 95, 103, 131, 160, 177, 319, 470, 485
Alw26I GTCTC 1 cut(s) 675
AlwI GGATC 2 cut(s) 243, 363
Ama87I CYCGRG 1 cut(s) 299
Aor13HI TCCGGA 1 cut(s) 521
AoxI GGCC 2 cut(s) 403, 543
AspS9I GGNCC 2 cut(s) 340, 536
AsuHPI GGTGA 3 cut(s) 67, 400, 523
AvaI CYCGRG 1 cut(s) 299
AvaII GGWCC 2 cut(s) 340, 536
BarI GAAGNNNNNNTAC 2 cut(s) 20, 52
BbsI GAAGAC 1 cut(s) 354
BbvCI CCTCAGC 1 cut(s) 320
BccI CCATC 2 cut(s) 502, 554
BceAI ACGGC 1 cut(s) 390
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 675
BfmI CTRYAG 1 cut(s) 368
BfuAI ACCTGC 3 cut(s) 43, 547, 629
BglI GCCNNNNNGGC 1 cut(s) 49
BisI GCNGC 1 cut(s) 543
BlsI GCNGC 1 cut(s) 544
Bme18I GGWCC 2 cut(s) 340, 536
BmeRI GACNNNNNGTC 1 cut(s) 667
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 2 cut(s) 340, 536
BpiI GAAGAC 1 cut(s) 354
BpmI CTGGAG 2 cut(s) 117, 163
Bpu10I CCTNAGC 1 cut(s) 320
BpuEI CTTGAG 2 cut(s) 157, 476
BsaAI YACGTR 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 186, 400
BsaWI WCCGGW 1 cut(s) 521
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 3 cut(s) 157, 180, 223
Bse8I GATNNNNATC 1 cut(s) 20
BseAI TCCGGA 1 cut(s) 521
BseDI CCNNGG 2 cut(s) 186, 400
BseGI GGATG 3 cut(s) 196, 513, 689
BseJI GATNNNNATC 1 cut(s) 20
BseMII CTCAG 3 cut(s) 278, 311, 462
BseNI ACTGG 3 cut(s) 157, 180, 223
BseRI GAGGAG 2 cut(s) 85, 540
BshFI GGCC 2 cut(s) 405, 545
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 2 cut(s) 44, 522
BsmAI GTCTC 1 cut(s) 675
BsnI GGCC 2 cut(s) 405, 545
BsoBI CYCGRG 1 cut(s) 299
Bsp13I TCCGGA 1 cut(s) 521
Bsp143I GATC 6 cut(s) 21, 30, 235, 250, 279, 355
BspACI CCGC 1 cut(s) 542
BspANI GGCC 2 cut(s) 405, 545
BspCNI CTCAG 3 cut(s) 279, 312, 463
BspEI TCCGGA 1 cut(s) 521
BspMAI CTGCAG 1 cut(s) 372
BspMI ACCTGC 3 cut(s) 43, 547, 629
BspPI GGATC 2 cut(s) 243, 363
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 3 cut(s) 157, 180, 223
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 186, 400
BssMI GATC 6 cut(s) 21, 30, 235, 250, 279, 355
BssT1I CCWWGG 2 cut(s) 186, 400
BstBAI YACGTR 1 cut(s) 215
BstC8I GCNNGC 2 cut(s) 45, 158
BstDEI CTNAG 5 cut(s) 287, 320, 420, 471, 705
BstEII GGTNACC 1 cut(s) 55
BstF5I GGATG 3 cut(s) 196, 513, 689
BstKTI GATC 6 cut(s) 24, 33, 238, 253, 282, 358
BstMAI GTCTC 1 cut(s) 675
BstMBI GATC 6 cut(s) 21, 30, 235, 250, 279, 355
BstMWI GCNNNNNNNGC 2 cut(s) 49, 611
BstPI GGTNACC 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 368
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
BsuRI GGCC 2 cut(s) 405, 545
BtsCI GGATG 3 cut(s) 196, 513, 689
BveI ACCTGC 3 cut(s) 43, 547, 629
Cac8I GCNNGC 2 cut(s) 45, 158
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 340, 536
Csp6I GTAC 3 cut(s) 183, 205, 216
CviAII CATG 1 cut(s) 550
CviQI GTAC 3 cut(s) 183, 205, 216
DdeI CTNAG 5 cut(s) 287, 320, 420, 471, 705
DpnI GATC 6 cut(s) 23, 32, 237, 252, 281, 357
DpnII GATC 6 cut(s) 21, 30, 235, 250, 279, 355
DriI GACNNNNNGTC 1 cut(s) 667
EaeI YGGCCR 2 cut(s) 403, 543
Eam1105I GACNNNNNGTC 1 cut(s) 667
Eco130I CCWWGG 2 cut(s) 186, 400
Eco32I GATATC 1 cut(s) 532
Eco47I GGWCC 2 cut(s) 340, 536
Eco57I CTGAAG 1 cut(s) 144
Eco88I CYCGRG 1 cut(s) 299
Eco91I GGTNACC 1 cut(s) 55
EcoO109I RGGNCCY 1 cut(s) 340
EcoO65I GGTNACC 1 cut(s) 55
EcoRV GATATC 1 cut(s) 532
EcoT14I CCWWGG 2 cut(s) 186, 400
ErhI CCWWGG 2 cut(s) 186, 400
FaeI CATG 1 cut(s) 553
FaiI YATR 3 cut(s) 437, 449, 551
FalI AAGNNNNNCTT 2 cut(s) 384, 416
FatI CATG 1 cut(s) 549
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 1 cut(s) 543
FokI GGATG 3 cut(s) 203, 520, 696
Fsp4HI GCNGC 1 cut(s) 543
GluI GCNGC 1 cut(s) 543
GsuI CTGGAG 2 cut(s) 117, 163
HaeIII GGCC 2 cut(s) 405, 545
HapII CCGG 2 cut(s) 44, 522
Hin1II CATG 1 cut(s) 553
HinfI GANTC 3 cut(s) 119, 412, 599
HpaII CCGG 2 cut(s) 44, 522
HphI GGTGA 3 cut(s) 67, 400, 523
Hpy188I TCNGA 6 cut(s) 124, 235, 536, 598, 661, 683
Hpy188III TCNNGA 5 cut(s) 25, 88, 359, 522, 644
HpyAV CCTTC 4 cut(s) 69, 70, 325, 578
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 3 cut(s) 200, 259, 370
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 611
HpyF3I CTNAG 5 cut(s) 287, 320, 420, 471, 705
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 1 cut(s) 553
Kpn2I TCCGGA 1 cut(s) 521
KroI GCCGGC 1 cut(s) 43
KroNI GCCGGC 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 6 cut(s) 21, 30, 235, 250, 279, 355
LmnI GCTCC 4 cut(s) 182, 467, 629, 662
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 2 cut(s) 55, 589
MalI GATC 6 cut(s) 23, 32, 237, 252, 281, 357
MboI GATC 6 cut(s) 21, 30, 235, 250, 279, 355
MboII GAAGA 5 cut(s) 25, 40, 359, 593, 659
MflI RGATCY 1 cut(s) 355
MluCI AATT 1 cut(s) 383
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 4 cut(s) 243, 537, 668, 684
MnlI CCTC 7 cut(s) 63, 295, 315, 331, 498, 518, 690
MroI TCCGGA 1 cut(s) 521
MroNI GCCGGC 1 cut(s) 43
MspI CCGG 2 cut(s) 44, 522
MwoI GCNNNNNNNGC 2 cut(s) 49, 611
NaeI GCCGGC 1 cut(s) 45
NdeII GATC 6 cut(s) 21, 30, 235, 250, 279, 355
NgoMIV GCCGGC 1 cut(s) 43
NlaIII CATG 1 cut(s) 553
NmuCI GTSAC 2 cut(s) 55, 589
PaeR7I CTCGAG 1 cut(s) 299
PaqCI CACCTGC 2 cut(s) 43, 629
PdiI GCCGGC 1 cut(s) 45
PfeI GAWTC 2 cut(s) 412, 599
PkrI GCNGC 1 cut(s) 544
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Ppu21I YACGTR 1 cut(s) 215
PpuMI RGGWCCY 1 cut(s) 340
Psp5II RGGWCCY 1 cut(s) 340
PspEI GGTNACC 1 cut(s) 55
PspPI GGNCC 2 cut(s) 340, 536
PspPPI RGGWCCY 1 cut(s) 340
PspXI VCTCGAGB 1 cut(s) 299
PstI CTGCAG 1 cut(s) 372
PsuI RGATCY 1 cut(s) 355
RsaI GTAC 3 cut(s) 184, 206, 217
RsaNI GTAC 3 cut(s) 183, 205, 216
SatI GCNGC 1 cut(s) 543
Sau3AI GATC 6 cut(s) 21, 30, 235, 250, 279, 355
Sau96I GGNCC 2 cut(s) 340, 536
SchI GAGTC 1 cut(s) 113
SfcI CTRYAG 1 cut(s) 368
Sfr274I CTCGAG 1 cut(s) 299
SinI GGWCC 2 cut(s) 340, 536
SlaI CTCGAG 1 cut(s) 299
SmlI CTYRAG 3 cut(s) 172, 299, 455
SmoI CTYRAG 3 cut(s) 172, 299, 455
Sse9I AATT 1 cut(s) 383
SsiI CCGC 1 cut(s) 542
SspI AATATT 1 cut(s) 574
StyI CCWWGG 2 cut(s) 186, 400
TaiI ACGT 1 cut(s) 217
TaqI TCGA 3 cut(s) 33, 300, 360
TasI AATT 1 cut(s) 383
TauI GCSGC 1 cut(s) 545
TfiI GAWTC 2 cut(s) 412, 599
TseFI GTSAC 2 cut(s) 55, 589
Tsp45I GTSAC 2 cut(s) 55, 589
TspDTI ATGAA 2 cut(s) 344, 378
VpaK11BI GGWCC 2 cut(s) 340, 536
XcmI CCANNNNNNNNNTGG 1 cut(s) 553
XhoI CTCGAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.